BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011614
         (967 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containi...   330   3e-88
ref|XP_004171307.1| PREDICTED: pentatricopeptide repeat-containi...   320   2e-85
ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containi...   319   7e-85
ref|XP_002316488.1| predicted protein [Populus trichocarpa] gi|2...   304   2e-80
ref|XP_002515794.1| pentatricopeptide repeat-containing protein,...   295   8e-78

>ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score =  330 bits (846), Expect = 3e-88
 Identities = 177/302 (58%), Positives = 210/302 (69%), Gaps = 12/302 (3%)
 Frame = +3

Query: 96  FAFSSKHSRKPDPSLNTN--IRRPKTLKPA--PQDPNHEXXXXXXXXXXXXKKIEKNSHN 263
           F FSSK S +PD   N++  +RRPKTLKP+  P  P+ +                 N  N
Sbjct: 32  FCFSSKTSPEPDEPSNSSGHLRRPKTLKPSLNPTPPSPKTTKNPLKNIVNPTISPTNPAN 91

Query: 264 LDTKLWLSSKISPPV--------QETISKDEPMVLENVGNESDPKVESPLPVIEFRQEGK 419
           L  KLWLSS++SPP         QETI  +E  V  N+ N          P IEFRQEGK
Sbjct: 92  LTNKLWLSSQLSPPPPPPPTRPPQETIDDNEVTVSSNLDN----LCSDGSPEIEFRQEGK 147

Query: 420 IFVGNLPLWIKKNEVAEFFRQFGPVKNVILIKGYENPERNLGYGFVIYGGPTAVNSANKA 599
           IFVGNLP W+KKNEV+EFFRQFGP++NVILIKG+ + +RN G+GFVIYGGP A  SA +A
Sbjct: 148 IFVGNLPNWVKKNEVSEFFRQFGPIENVILIKGHNDNQRNAGFGFVIYGGPMASGSAMRA 207

Query: 600 VEFDGVEFHGRVLTVKLDDGXXXXXXXXXXXXXFEGGDEVEYRSDWHEKRENARRDFKKV 779
           VEFDGVEFHGRVLTVKLDDG              + G  V+ RS WHE+RE++R+DF+KV
Sbjct: 208 VEFDGVEFHGRVLTVKLDDGRRLRGRSEERARWVQ-GHGVDQRSKWHEERESSRKDFRKV 266

Query: 780 IDTEPENWQAVVRAFERVTKPSRKEFGLMVKYYAKRGDMHRARQTFENMRARGIEPTSHV 959
           ++TEPENWQAVV+AFER+ KPSRKEFGLMV YYA+RGDMH AR TFE+MRARGIEPTSHV
Sbjct: 267 LETEPENWQAVVQAFERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHV 326

Query: 960 YT 965
           YT
Sbjct: 327 YT 328


>ref|XP_004171307.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 398

 Score =  320 bits (821), Expect = 2e-85
 Identities = 180/323 (55%), Positives = 204/323 (63%), Gaps = 15/323 (4%)
 Frame = +3

Query: 42  PVTTTSLFSPRPFFHFQTFAFSSKHSRKPDPSLNTNIRRPKTLKPA----------PQDP 191
           P     LFS +P          S  S   DPSL+  IRRP+TLK            P +P
Sbjct: 31  PSPAIILFSLKPPSPPTPSRSDSDDSSSSDPSLSGRIRRPQTLKTTSSPKRTTSQVPSNP 90

Query: 192 --NHEXXXXXXXXXXXXKKIEKNSHNLDTKLWLSSKISPP---VQETISKDEPMVLENVG 356
             N                    SH+L  KLWLSSK+SPP   + E + +D   + E   
Sbjct: 91  LRNLVGSAYVPILPPPPPPPPPVSHSLSEKLWLSSKLSPPPPPISELLEEDRNEIEEI-- 148

Query: 357 NESDPKVESPLPVIEFRQEGKIFVGNLPLWIKKNEVAEFFRQFGPVKNVILIKGYENPER 536
            ESD         ++FRQEGKIFVGNLP WIKK+EV EFFRQFGPVKNVILIKG+   ER
Sbjct: 149 -ESDNSSSKGRREVQFRQEGKIFVGNLPNWIKKHEVQEFFRQFGPVKNVILIKGHNAVER 207

Query: 537 NLGYGFVIYGGPTAVNSANKAVEFDGVEFHGRVLTVKLDDGXXXXXXXXXXXXXFEGGDE 716
           N GYGF+IY G TA  SA KAVEFDGVEFHGRVLTVKLDDG              EG D 
Sbjct: 208 NAGYGFIIYDGLTADKSAIKAVEFDGVEFHGRVLTVKLDDGRRLKEKTDERARWMEGDDS 267

Query: 717 VEYRSDWHEKRENARRDFKKVIDTEPENWQAVVRAFERVTKPSRKEFGLMVKYYAKRGDM 896
           VEYRS WHE+R+ AR   +KVI+TEPENWQAVV AFER+ KPSRKE+GLMV YYA+RGDM
Sbjct: 268 VEYRSHWHEERDKARNGLRKVIETEPENWQAVVSAFERIKKPSRKEYGLMVNYYARRGDM 327

Query: 897 HRARQTFENMRARGIEPTSHVYT 965
           HRAR+TFE MRARGIEP+SHVYT
Sbjct: 328 HRARETFEKMRARGIEPSSHVYT 350


>ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score =  319 bits (817), Expect = 7e-85
 Identities = 179/323 (55%), Positives = 203/323 (62%), Gaps = 15/323 (4%)
 Frame = +3

Query: 42  PVTTTSLFSPRPFFHFQTFAFSSKHSRKPDPSLNTNIRRPKTLKPA----------PQDP 191
           P     LFS +P          S  S   DPSL+  IRRP+TLK            P +P
Sbjct: 31  PSPAIILFSLKPPSPPTPSRSDSDDSSSSDPSLSGRIRRPQTLKTTSSPKRTTSQVPSNP 90

Query: 192 --NHEXXXXXXXXXXXXKKIEKNSHNLDTKLWLSSKISPP---VQETISKDEPMVLENVG 356
             N                    SH+L  KLWLSSK+SPP   + E + +D   + E   
Sbjct: 91  LRNLVGSAYVPILPPPPPPPPPVSHSLSEKLWLSSKLSPPPPPISELLEEDRNEIEEI-- 148

Query: 357 NESDPKVESPLPVIEFRQEGKIFVGNLPLWIKKNEVAEFFRQFGPVKNVILIKGYENPER 536
            ESD         ++FRQEGKIFVGNLP WIKK+EV EFFRQFGPVKNVILIKG+   ER
Sbjct: 149 -ESDNSSSKGRREVQFRQEGKIFVGNLPNWIKKHEVQEFFRQFGPVKNVILIKGHNAVER 207

Query: 537 NLGYGFVIYGGPTAVNSANKAVEFDGVEFHGRVLTVKLDDGXXXXXXXXXXXXXFEGGDE 716
           N GYGF+IY G TA  SA KAVEFDGVEFHGRVLTVKLDDG              EG D 
Sbjct: 208 NAGYGFIIYDGLTADKSAIKAVEFDGVEFHGRVLTVKLDDGRRLKEKTDERARWMEGDDS 267

Query: 717 VEYRSDWHEKRENARRDFKKVIDTEPENWQAVVRAFERVTKPSRKEFGLMVKYYAKRGDM 896
           VEYRS WHE+R+ AR   +KVI+TEPENWQAVV AFER+ KPSRKE+GLMV YY +RGDM
Sbjct: 268 VEYRSHWHEERDKARNGLRKVIETEPENWQAVVSAFERIKKPSRKEYGLMVNYYTRRGDM 327

Query: 897 HRARQTFENMRARGIEPTSHVYT 965
           HRAR+TFE MRARGIEP+SHVYT
Sbjct: 328 HRARETFEKMRARGIEPSSHVYT 350


>ref|XP_002316488.1| predicted protein [Populus trichocarpa] gi|222865528|gb|EEF02659.1|
           predicted protein [Populus trichocarpa]
          Length = 941

 Score =  304 bits (779), Expect = 2e-80
 Identities = 167/333 (50%), Positives = 207/333 (62%), Gaps = 21/333 (6%)
 Frame = +3

Query: 30  MENFPVTTTSLF--SPRPFFHFQT----FAFSSKHSRKPDPSLNTNIRRPKTLKPAPQDP 191
           M+  P++TT  F  SP PF    T    F+        P+P+ +++IRRPK+L P P   
Sbjct: 1   MDISPLSTTPRFPHSPTPFSSIATTTISFSLKPTPPPPPEPTNSSSIRRPKSLTPTPSTS 60

Query: 192 NHEXXXXXXXXXXXXKKI------------EKNSHNLDTKLWLSSKISPPVQETISKDEP 335
           +              K +              N  +L TKL LSSK+SPP          
Sbjct: 61  STPTPTTPKFPKNPLKTLLNPSKPSVTSTTTTNPLSLSTKLRLSSKLSPPPPPPPPPPPL 120

Query: 336 MVL---ENVGNESDPKVESPLPVIEFRQEGKIFVGNLPLWIKKNEVAEFFRQFGPVKNVI 506
            +L   E    E   K+E+  P IEF Q GKIF+GNLP WIKK+E++EFF QFGP+KNVI
Sbjct: 121 EILQTPEAETQEKTQKIENEAPRIEFYQNGKIFIGNLPNWIKKHELSEFFSQFGPIKNVI 180

Query: 507 LIKGYENPERNLGYGFVIYGGPTAVNSANKAVEFDGVEFHGRVLTVKLDDGXXXXXXXXX 686
           LI+ +   ERN G+GF+IY GP A  SA KA EFDG+EFHGRVLTVKLDDG         
Sbjct: 181 LIQSHNETERNAGFGFIIYDGPKAGKSAMKAEEFDGMEFHGRVLTVKLDDGRRLKAKAEE 240

Query: 687 XXXXFEGGDEVEYRSDWHEKRENARRDFKKVIDTEPENWQAVVRAFERVTKPSRKEFGLM 866
                 G D  +YRS WHE+RE + + F+KV+DT+PENWQAVV AFER+ KPSR+EFGLM
Sbjct: 241 RKNWVYGEDGKDYRSKWHEEREGSTKAFRKVLDTQPENWQAVVSAFERIKKPSRREFGLM 300

Query: 867 VKYYAKRGDMHRARQTFENMRARGIEPTSHVYT 965
           V YYA+RGDMHRARQTFE+MRARGI+P+SHVYT
Sbjct: 301 VGYYARRGDMHRARQTFESMRARGIDPSSHVYT 333


>ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545122|gb|EEF46633.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 924

 Score =  295 bits (756), Expect = 8e-78
 Identities = 157/325 (48%), Positives = 202/325 (62%), Gaps = 6/325 (1%)
 Frame = +3

Query: 9   HSLNEEIMENFPVTTTSLF----SPRPFFHFQTFAFSSKHSRKPDPSLNTNIRRPKTLKP 176
           HS+        P T+TS+     SP       + + +S   R+P+   +T+    +T  P
Sbjct: 26  HSITTTTTTTTPTTSTSISCSHDSPP-----HSESTNSSSLRRPNSLKSTSTTSTRTPTP 80

Query: 177 APQDPNHEXXXXXXXXXXXXKKIEK--NSHNLDTKLWLSSKISPPVQETISKDEPMVLEN 350
            P+ P +                 +  N+H+L +KL LS K+ P     +    P  +  
Sbjct: 81  TPKTPKNPFKILLNQPSHVPSPPPQTTNTHSLSSKLRLSGKLFPLPPPPLPLPPPPPVPR 140

Query: 351 VGNESDPKVESPLPVIEFRQEGKIFVGNLPLWIKKNEVAEFFRQFGPVKNVILIKGYENP 530
              + D   E+     EFRQEGKIF+GNLP WIKK+E++EFFRQFGP+K VILIKGY   
Sbjct: 141 AKTQVDKHQENESHKPEFRQEGKIFIGNLPNWIKKHEISEFFRQFGPIKKVILIKGYNET 200

Query: 531 ERNLGYGFVIYGGPTAVNSANKAVEFDGVEFHGRVLTVKLDDGXXXXXXXXXXXXXFEGG 710
           ERN G+GFVIY   TA  SA KAVEFDG+EFHGR+LTVKLDDG              EG 
Sbjct: 201 ERNAGFGFVIYDDKTAEKSATKAVEFDGMEFHGRILTVKLDDGRRLKAKADERKRWVEGE 260

Query: 711 DEVEYRSDWHEKRENARRDFKKVIDTEPENWQAVVRAFERVTKPSRKEFGLMVKYYAKRG 890
           D  +Y S WHE+R+ +R+ F++V++T+PENWQ VV AFER+ KPSR+E+GLMV YYA+RG
Sbjct: 261 DGDDYESKWHEERDGSRKAFRRVLETQPENWQDVVSAFERIKKPSRREYGLMVSYYARRG 320

Query: 891 DMHRARQTFENMRARGIEPTSHVYT 965
           DMHRARQTFE+MRARGIEPTSHVYT
Sbjct: 321 DMHRARQTFESMRARGIEPTSHVYT 345