BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011559
         (994 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containi...   333   5e-89
emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]   332   8e-89
ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|2...   288   1e-75
ref|XP_002516576.1| pentatricopeptide repeat-containing protein,...   279   7e-73
ref|XP_003588542.1| Pentatricopeptide repeat-containing protein ...   277   2e-72

>ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Vitis vinifera]
           gi|296081891|emb|CBI20896.3| unnamed protein product
           [Vitis vinifera]
          Length = 420

 Score =  333 bits (853), Expect = 5e-89
 Identities = 165/266 (62%), Positives = 208/266 (78%)
 Frame = -3

Query: 992 SDNIITALSLFEIMQRSEDCKPNSETYNMFISTYSKLGDIAAMQVWYSASKIAGFLPTVR 813
           S N++TALSLFEIMQ SE+CKPNSETYN FIS YS LG+  AMQ WY A K AGF   +R
Sbjct: 153 SGNVMTALSLFEIMQSSENCKPNSETYNTFISVYSNLGNDKAMQAWYLAQKGAGFSADLR 212

Query: 812 TFEYLITGSSKTQEFDSADKFYEEMLQLGIAPNMCMLQNMLDNTCQKKQYSKVNEFLKFV 633
           T+E LI+G  +++ FD AD+FYEEM+  GI PN  +L+N+L   C+++  SKV + LKF+
Sbjct: 213 TYESLISGCVRSRNFDCADRFYEEMMLSGIMPNGQILENILRGLCEQRSISKVEQLLKFM 272

Query: 632 LDGGLKLSGQMAKKLMEIYSEVWKVEEMEELLLIVTRTNQDLGVLSQVHCGIIRMYAMSD 453
           +DG  +++  MA+KLM +Y E   VE+MEELLL +  +NQ   VL QVHCGIIRM+AM D
Sbjct: 273 MDGEWEINVSMAEKLMGLYFEHGTVEKMEELLLNLMNSNQSFAVLQQVHCGIIRMHAMLD 332

Query: 452 RLDDLEFSVGRMLEQGISFTCPDDVEKAICSYFRCAAYERLELFLERIRGSYRLTRSAYD 273
           RLDD+E+SVGRML+QG+SF CPDD+EK +C+YFR  AYERL+LFL  I+GSY+LT+S YD
Sbjct: 333 RLDDMEYSVGRMLKQGMSFRCPDDIEKVVCAYFRREAYERLDLFLGHIKGSYKLTKSTYD 392

Query: 272 LLVAGYRRAGMSEKLDLVVKEMILAG 195
           LLVAGYRRAG+SEKLDLV+  M LAG
Sbjct: 393 LLVAGYRRAGLSEKLDLVMDGMKLAG 418


>emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]
          Length = 1331

 Score =  332 bits (851), Expect = 8e-89
 Identities = 164/266 (61%), Positives = 208/266 (78%)
 Frame = -3

Query: 992  SDNIITALSLFEIMQRSEDCKPNSETYNMFISTYSKLGDIAAMQVWYSASKIAGFLPTVR 813
            S N++TALSLFEIMQ SE+CKPNSETYN FIS YS LG+  AMQ WY A K AGF   +R
Sbjct: 1064 SGNVMTALSLFEIMQSSENCKPNSETYNTFISVYSNLGNDKAMQAWYLAXKGAGFSADLR 1123

Query: 812  TFEYLITGSSKTQEFDSADKFYEEMLQLGIAPNMCMLQNMLDNTCQKKQYSKVNEFLKFV 633
            T+E LI+G  +++ FD AD+FYEEM+  GI P+  +L+N+L   C+++  SKV + LKF+
Sbjct: 1124 TYESLISGCXRSRNFDCADRFYEEMMLSGIMPBGQILENILRGLCEQRSISKVEQLLKFM 1183

Query: 632  LDGGLKLSGQMAKKLMEIYSEVWKVEEMEELLLIVTRTNQDLGVLSQVHCGIIRMYAMSD 453
            +DG  +++  MA+KLM +Y E   VE+MEELLL +  +NQ   VL QVHCGIIRM+AM D
Sbjct: 1184 MDGEWEINVSMAEKLMGLYFEHGTVEKMEELLLNLMNSNQSFAVLQQVHCGIIRMHAMLD 1243

Query: 452  RLDDLEFSVGRMLEQGISFTCPDDVEKAICSYFRCAAYERLELFLERIRGSYRLTRSAYD 273
            RLDD+E+SVGRML+QG+SF CPDD+EK +C+YFR  AYERL+LFL  I+GSY+LT+S YD
Sbjct: 1244 RLDDMEYSVGRMLKQGMSFRCPDDIEKVVCAYFRREAYERLDLFLGHIKGSYKLTKSTYD 1303

Query: 272  LLVAGYRRAGMSEKLDLVVKEMILAG 195
            LLVAGYRRAG+SEKLDLV+  M LAG
Sbjct: 1304 LLVAGYRRAGLSEKLDLVMDGMKLAG 1329


>ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|222855543|gb|EEE93090.1|
           predicted protein [Populus trichocarpa]
          Length = 424

 Score =  288 bits (738), Expect = 1e-75
 Identities = 141/267 (52%), Positives = 197/267 (73%)
 Frame = -3

Query: 992 SDNIITALSLFEIMQRSEDCKPNSETYNMFISTYSKLGDIAAMQVWYSASKIAGFLPTVR 813
           S N+ITALSLFEIM+ SE  KPNSETY+ F++ +S L D+  MQ W+   + AGF  +++
Sbjct: 158 SSNVITALSLFEIMENSESYKPNSETYDKFVAGFSNLRDVNKMQAWFVGKRAAGFSASLQ 217

Query: 812 TFEYLITGSSKTQEFDSADKFYEEMLQLGIAPNMCMLQNMLDNTCQKKQYSKVNEFLKFV 633
            +E LI+G  K ++FD+AD+ YEEM+ LGI P++ +++ +L+  C++    KV EFL F+
Sbjct: 218 NYECLISGCVKARDFDTADRLYEEMMSLGIMPSLHIMEWVLEGHCKRGSCDKVKEFLNFL 277

Query: 632 LDGGLKLSGQMAKKLMEIYSEVWKVEEMEELLLIVTRTNQDLGVLSQVHCGIIRMYAMSD 453
           L+   +++G M + ++ +YSE+ KV+EME LL ++   NQ    L Q+HCGIIR YAM D
Sbjct: 278 LECKFEINGNMIENVVRLYSELGKVDEMEMLLEMLMEFNQVGEALLQLHCGIIRFYAMLD 337

Query: 452 RLDDLEFSVGRMLEQGISFTCPDDVEKAICSYFRCAAYERLELFLERIRGSYRLTRSAYD 273
           +LDD+EFSVGRM+ QG+SF  P DVEK I SYFR  AYERL+LFLE I+  Y+LTRS YD
Sbjct: 338 KLDDVEFSVGRMMSQGMSFKSPSDVEKVISSYFRQEAYERLDLFLEHIKSYYKLTRSTYD 397

Query: 272 LLVAGYRRAGMSEKLDLVVKEMILAGL 192
           LLVAGYRR G+ EKL+L++++M LAG+
Sbjct: 398 LLVAGYRRVGLMEKLNLLMEDMKLAGV 424


>ref|XP_002516576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544396|gb|EEF45917.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 416

 Score =  279 bits (714), Expect = 7e-73
 Identities = 134/263 (50%), Positives = 193/263 (73%)
 Frame = -3

Query: 986 NIITALSLFEIMQRSEDCKPNSETYNMFISTYSKLGDIAAMQVWYSASKIAGFLPTVRTF 807
           N++TALSLFEIM  SE CKP+S+TY+ F+  +S L D+  MQ W++A K AG+   V+ +
Sbjct: 153 NVLTALSLFEIMDISEFCKPDSQTYDTFVLGFSNLRDVVKMQAWFAAKKAAGYTANVQNY 212

Query: 806 EYLITGSSKTQEFDSADKFYEEMLQLGIAPNMCMLQNMLDNTCQKKQYSKVNEFLKFVLD 627
           E LI+   KT++ D AD+ ++EM+ +G+ P+  +L+ +L+  C+++   +V  FL F+L+
Sbjct: 213 ECLISTCVKTKDLDKADRLFDEMMSMGVMPSAAILEWVLEGLCKRRDCDRVRGFLNFLLE 272

Query: 626 GGLKLSGQMAKKLMEIYSEVWKVEEMEELLLIVTRTNQDLGVLSQVHCGIIRMYAMSDRL 447
              + +G M +K++E+YSE+ KV+EME+LL I    NQ    LS++HCGIIR YA +DRL
Sbjct: 273 CRFEFNGNMIEKIVELYSELGKVDEMEKLLDICAEFNQVGETLSRLHCGIIRFYAKADRL 332

Query: 446 DDLEFSVGRMLEQGISFTCPDDVEKAICSYFRCAAYERLELFLERIRGSYRLTRSAYDLL 267
           DD+E+SVGRM   G+ F  PDDVEK I SYFR  AY+RL+LFLE ++G ++LTRS YDLL
Sbjct: 333 DDVEYSVGRMTSSGMLFRSPDDVEKVISSYFRKEAYDRLDLFLEHVKGYHKLTRSTYDLL 392

Query: 266 VAGYRRAGMSEKLDLVVKEMILA 198
           VAGYRRAG++EKL+LV+ +M LA
Sbjct: 393 VAGYRRAGLAEKLELVMLDMKLA 415


>ref|XP_003588542.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355477590|gb|AES58793.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 428

 Score =  277 bits (709), Expect = 2e-72
 Identities = 141/267 (52%), Positives = 189/267 (70%)
 Frame = -3

Query: 992 SDNIITALSLFEIMQRSEDCKPNSETYNMFISTYSKLGDIAAMQVWYSASKIAGFLPTVR 813
           S +I+TA SLFEIM+ SE+ KP+  TYN FIS +SK G++ AM  WYSA K  G  P ++
Sbjct: 150 SHDIVTAYSLFEIMESSENYKPDFHTYNNFISAFSKSGNVDAMLAWYSAKKATGLGPDLQ 209

Query: 812 TFEYLITGSSKTQEFDSADKFYEEMLQLGIAPNMCMLQNMLDNTCQKKQYSKVNEFLKFV 633
           TFE +I+G   ++ ++ AD+ +EEM    + PN+ +L++ML   C +K   + NEF KFV
Sbjct: 210 TFESVISGCVNSKNYEIADRVFEEMKISEMIPNVTILESMLKGFCSQKSLCRANEFFKFV 269

Query: 632 LDGGLKLSGQMAKKLMEIYSEVWKVEEMEELLLIVTRTNQDLGVLSQVHCGIIRMYAMSD 453
           LD   ++S  MA  L+ +Y E  +VE+MEELL  +T    D GVLSQ+HCGI+ MYAM D
Sbjct: 270 LDNRWQISETMAAMLVVLYHEQGQVEKMEELLETITSYPIDSGVLSQIHCGIVTMYAMLD 329

Query: 452 RLDDLEFSVGRMLEQGISFTCPDDVEKAICSYFRCAAYERLELFLERIRGSYRLTRSAYD 273
           RLD++E SVGRML+QG+SFT  DDVEK ICSYFR  AY+RL++FLE I+  Y  TRS YD
Sbjct: 330 RLDEVELSVGRMLKQGMSFTSSDDVEKVICSYFRKEAYDRLDIFLECIKNCYVHTRSTYD 389

Query: 272 LLVAGYRRAGMSEKLDLVVKEMILAGL 192
           LL++GYRRA + EK+DLV+ +M   GL
Sbjct: 390 LLISGYRRANLHEKVDLVLADMESVGL 416