BLASTX nr result
ID: Coptis24_contig00011547
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00011547
(448 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI29975.3| unnamed protein product [Vitis vinifera] 254 7e-66
ref|XP_002276459.1| PREDICTED: F-box protein At3g58530 [Vitis vi... 254 7e-66
emb|CAN73494.1| hypothetical protein VITISV_044261 [Vitis vinifera] 250 1e-64
ref|XP_002308350.1| predicted protein [Populus trichocarpa] gi|2... 249 1e-64
ref|XP_002531168.1| ubiquitin-protein ligase, putative [Ricinus ... 235 2e-60
>emb|CBI29975.3| unnamed protein product [Vitis vinifera]
Length = 350
Score = 254 bits (648), Expect = 7e-66
Identities = 122/149 (81%), Positives = 135/149 (90%)
Frame = -1
Query: 448 LSGCKNITDTGLNAVADNYPELEVLNLTRCVKLTDEGLQRVLLKCSCLRSLNLYALSSFT 269
LSGCKNITD L +ADNYP+LE+LNLTRC+KLTD GLQ++LLKCS L+SLNLYALSSFT
Sbjct: 170 LSGCKNITDKSLQLIADNYPDLELLNLTRCIKLTDGGLQQILLKCSSLQSLNLYALSSFT 229
Query: 268 DEAYKKIASLSHLKFLDLCGAQNLSDHGLSCIAECNNLVHLNLTWCVRVTDVGVIAVAEG 89
DEAYKKI+ L+ L+FLDLCGAQNLSD GL CIA+C NLV LNLTWCVRVTDVGVIA+A+G
Sbjct: 230 DEAYKKISLLTDLRFLDLCGAQNLSDQGLCCIAKCKNLVSLNLTWCVRVTDVGVIAIAQG 289
Query: 88 CTSLEFLSLFGIVGVTDKCLEAFSRFCSN 2
CTSLEFLSLFGIVGVTDKCLEA SR CSN
Sbjct: 290 CTSLEFLSLFGIVGVTDKCLEALSRSCSN 318
>ref|XP_002276459.1| PREDICTED: F-box protein At3g58530 [Vitis vinifera]
Length = 353
Score = 254 bits (648), Expect = 7e-66
Identities = 122/149 (81%), Positives = 135/149 (90%)
Frame = -1
Query: 448 LSGCKNITDTGLNAVADNYPELEVLNLTRCVKLTDEGLQRVLLKCSCLRSLNLYALSSFT 269
LSGCKNITD L +ADNYP+LE+LNLTRC+KLTD GLQ++LLKCS L+SLNLYALSSFT
Sbjct: 170 LSGCKNITDKSLQLIADNYPDLELLNLTRCIKLTDGGLQQILLKCSSLQSLNLYALSSFT 229
Query: 268 DEAYKKIASLSHLKFLDLCGAQNLSDHGLSCIAECNNLVHLNLTWCVRVTDVGVIAVAEG 89
DEAYKKI+ L+ L+FLDLCGAQNLSD GL CIA+C NLV LNLTWCVRVTDVGVIA+A+G
Sbjct: 230 DEAYKKISLLTDLRFLDLCGAQNLSDQGLCCIAKCKNLVSLNLTWCVRVTDVGVIAIAQG 289
Query: 88 CTSLEFLSLFGIVGVTDKCLEAFSRFCSN 2
CTSLEFLSLFGIVGVTDKCLEA SR CSN
Sbjct: 290 CTSLEFLSLFGIVGVTDKCLEALSRSCSN 318
>emb|CAN73494.1| hypothetical protein VITISV_044261 [Vitis vinifera]
Length = 349
Score = 250 bits (638), Expect = 1e-64
Identities = 121/149 (81%), Positives = 133/149 (89%)
Frame = -1
Query: 448 LSGCKNITDTGLNAVADNYPELEVLNLTRCVKLTDEGLQRVLLKCSCLRSLNLYALSSFT 269
LSGCKNITD L +ADNYP+LE+LNLTRC KLTD GLQ++LL CS L+SLNLYALSSFT
Sbjct: 170 LSGCKNITDKSLQLIADNYPDLELLNLTRCXKLTDGGLQQILLXCSSLQSLNLYALSSFT 229
Query: 268 DEAYKKIASLSHLKFLDLCGAQNLSDHGLSCIAECNNLVHLNLTWCVRVTDVGVIAVAEG 89
DEAYKKI+ L+ L+FLDLCGAQNLSD GL CIA+C NLV LNLTWCVRVTDVGVIA+A+G
Sbjct: 230 DEAYKKISLLTDLRFLDLCGAQNLSDQGLCCIAKCKNLVSLNLTWCVRVTDVGVIAIAQG 289
Query: 88 CTSLEFLSLFGIVGVTDKCLEAFSRFCSN 2
CTSLEFLSLFGIVGVTDKCLEA SR CSN
Sbjct: 290 CTSLEFLSLFGIVGVTDKCLEALSRSCSN 318
>ref|XP_002308350.1| predicted protein [Populus trichocarpa] gi|222854326|gb|EEE91873.1|
predicted protein [Populus trichocarpa]
Length = 341
Score = 249 bits (637), Expect = 1e-64
Identities = 120/149 (80%), Positives = 133/149 (89%)
Frame = -1
Query: 448 LSGCKNITDTGLNAVADNYPELEVLNLTRCVKLTDEGLQRVLLKCSCLRSLNLYALSSFT 269
LSGCKNI+D L +A+NY ELE LNLTRC+KLTD GLQ++L KCS L+SLNLYALSSFT
Sbjct: 158 LSGCKNISDKALQLIAENYQELESLNLTRCIKLTDGGLQQILSKCSSLQSLNLYALSSFT 217
Query: 268 DEAYKKIASLSHLKFLDLCGAQNLSDHGLSCIAECNNLVHLNLTWCVRVTDVGVIAVAEG 89
D+AYKKI+SLS LKFLDLCGAQNLSD GLSCIA+C N+V LNLTWCVRVTDVG +A+AEG
Sbjct: 218 DKAYKKISSLSLLKFLDLCGAQNLSDEGLSCIAKCKNIVSLNLTWCVRVTDVGAVAIAEG 277
Query: 88 CTSLEFLSLFGIVGVTDKCLEAFSRFCSN 2
CTSLEFLSLFGIVGVTDKCLE SRFCSN
Sbjct: 278 CTSLEFLSLFGIVGVTDKCLEVLSRFCSN 306
Score = 77.0 bits (188), Expect = 1e-12
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Frame = -1
Query: 388 ELEVLNLTRCVKLTDEGLQRVLLKCSCLRSLNLYALSSFTDEAYKKIA-SLSHLKFLDLC 212
+LE LNL C K++D+G++ + CS L+ ++Y TD K + + + L+L
Sbjct: 100 KLESLNLNGCQKISDKGIEAITSTCSKLKVFSIYWNVRVTDIGIKHVVENCKQIVDLNLS 159
Query: 211 GAQNLSDHGLSCIAE-CNNLVHLNLTWCVRVTDVGVIAVAEGCTSLEFLSLFGIVGVTDK 35
G +N+SD L IAE L LNLT C+++TD G+ + C+SL+ L+L+ + TDK
Sbjct: 160 GCKNISDKALQLIAENYQELESLNLTRCIKLTDGGLQQILSKCSSLQSLNLYALSSFTDK 219
Query: 34 CLEAFS 17
+ S
Sbjct: 220 AYKKIS 225
>ref|XP_002531168.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223529238|gb|EEF31211.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 351
Score = 235 bits (600), Expect = 2e-60
Identities = 111/149 (74%), Positives = 131/149 (87%)
Frame = -1
Query: 448 LSGCKNITDTGLNAVADNYPELEVLNLTRCVKLTDEGLQRVLLKCSCLRSLNLYALSSFT 269
LSGCKNI+D L VAD Y ++E+L+LTRC+KLTD+GLQ++L KCS L+SLNLYALS+FT
Sbjct: 168 LSGCKNISDKSLQLVADLYQDIELLDLTRCIKLTDDGLQQILSKCSSLKSLNLYALSTFT 227
Query: 268 DEAYKKIASLSHLKFLDLCGAQNLSDHGLSCIAECNNLVHLNLTWCVRVTDVGVIAVAEG 89
D+AY+ I++L+HL+ LDLCGAQNLSD GLSCIA+C NL LNLTWCVRVT+ GVIA+AEG
Sbjct: 228 DKAYRNISNLAHLRILDLCGAQNLSDEGLSCIAKCKNLTSLNLTWCVRVTNAGVIAIAEG 287
Query: 88 CTSLEFLSLFGIVGVTDKCLEAFSRFCSN 2
CT LEFLSLFGIVGVTDKCLEA SR CSN
Sbjct: 288 CTYLEFLSLFGIVGVTDKCLEALSRSCSN 316
Score = 72.8 bits (177), Expect = 3e-11
Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Frame = -1
Query: 448 LSGCKNITDTGLNAV----ADNYPELEVLNLTRCVKLTDEGLQRVLLKCSCLRSLNLYAL 281
L ++I D L + + + LE LNL C K++D+G++ + C L+ ++Y
Sbjct: 86 LEFAQDIEDRHLQVIQSKASSSLQNLESLNLNGCQKISDKGIEAITSACPNLKVFSIYWN 145
Query: 280 SSFTDEAYKK-IASLSHLKFLDLCGAQNLSDHGLSCIAEC-NNLVHLNLTWCVRVTDVGV 107
TD K+ + + H+ L+L G +N+SD L +A+ ++ L+LT C+++TD G+
Sbjct: 146 VRVTDVGIKQLVENCKHIVDLNLSGCKNISDKSLQLVADLYQDIELLDLTRCIKLTDDGL 205
Query: 106 IAVAEGCTSLEFLSLFGIVGVTDKCLEAFS 17
+ C+SL+ L+L+ + TDK S
Sbjct: 206 QQILSKCSSLKSLNLYALSTFTDKAYRNIS 235