BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011546
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531168.1| ubiquitin-protein ligase, putative [Ricinus ...    80   2e-13
ref|XP_002308350.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
ref|XP_003533907.1| PREDICTED: F-box protein At3g58530-like [Gly...    72   6e-11
ref|XP_002876467.1| hypothetical protein ARALYDRAFT_486305 [Arab...    71   1e-10
ref|XP_002276459.1| PREDICTED: F-box protein At3g58530 [Vitis vi...    71   1e-10

>ref|XP_002531168.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223529238|gb|EEF31211.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 351

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 37/41 (90%), Positives = 38/41 (92%)
 Frame = -3

Query: 299 SRFCSNTLMTLDVNGCIGIKRRSRDELLQLFPHLICFKVHS 177
           SR CSNT+ TLDVNGCIGIKRRSRDELLQLFPHL CFKVHS
Sbjct: 311 SRSCSNTITTLDVNGCIGIKRRSRDELLQLFPHLRCFKVHS 351


>ref|XP_002308350.1| predicted protein [Populus trichocarpa] gi|222854326|gb|EEE91873.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 37/41 (90%), Positives = 38/41 (92%)
 Frame = -3

Query: 299 SRFCSNTLMTLDVNGCIGIKRRSRDELLQLFPHLICFKVHS 177
           SRFCSNT+ TLDVNGCIGIKRRSRDELLQLFP L CFKVHS
Sbjct: 301 SRFCSNTVTTLDVNGCIGIKRRSRDELLQLFPRLRCFKVHS 341


>ref|XP_003533907.1| PREDICTED: F-box protein At3g58530-like [Glycine max]
          Length = 353

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 32/41 (78%), Positives = 37/41 (90%)
 Frame = -3

Query: 299 SRFCSNTLMTLDVNGCIGIKRRSRDELLQLFPHLICFKVHS 177
           S+ CSN + TLDVNGCIGIK+RSR+ELLQLFP+L CFKVHS
Sbjct: 313 SKSCSNKITTLDVNGCIGIKKRSREELLQLFPYLKCFKVHS 353


>ref|XP_002876467.1| hypothetical protein ARALYDRAFT_486305 [Arabidopsis lyrata subsp.
           lyrata] gi|297322305|gb|EFH52726.1| hypothetical protein
           ARALYDRAFT_486305 [Arabidopsis lyrata subsp. lyrata]
          Length = 353

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = -3

Query: 299 SRFCSNTLMTLDVNGCIGIKRRSRDELLQLFPHLICFKVHS 177
           S+ CS +L TLDVNGCIGIKRRSR+ELLQ+FP L CFKVHS
Sbjct: 313 SQTCSTSLTTLDVNGCIGIKRRSREELLQMFPRLTCFKVHS 353


>ref|XP_002276459.1| PREDICTED: F-box protein At3g58530 [Vitis vinifera]
          Length = 353

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/41 (80%), Positives = 35/41 (85%)
 Frame = -3

Query: 299 SRFCSNTLMTLDVNGCIGIKRRSRDELLQLFPHLICFKVHS 177
           SR CSN + TLDVNGCIGIK RSRDELLQ FP+L CFKVHS
Sbjct: 313 SRSCSNMITTLDVNGCIGIKGRSRDELLQYFPYLRCFKVHS 353