BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011540
         (861 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269045.1| PREDICTED: transcription initiation factor I...   127   3e-39
ref|XP_002284342.1| PREDICTED: transcription initiation factor I...   127   3e-39
emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]   127   3e-39
ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group] g...   132   1e-28
ref|XP_002513521.1| transcription initiation factor iib, putativ...   130   3e-28

>ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|296088031|emb|CBI35314.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  127 bits (320), Expect(2) = 3e-39
 Identities = 70/112 (62%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
 Frame = +3

Query: 201 LETIVDRSGQEIYVQIKYKMDRANEIYKKVVDHKSMRGRNLDAFLVACLFVVCHQEHKPR 380
           + T+ DR G  +   IK   DRANEIYKKV D KS RGRN DA L ACL++ C QE KPR
Sbjct: 112 IATMSDRLG--LVATIK---DRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPR 166

Query: 381 TVKEIHSIANGATKKEIGMNKFFMEKQLK-EIGESMETGATYAGDFMRRFCS 533
           TVKEI S+ANGATKKEIG  K ++ KQL+ E G+S+E G  +AGDFMRRFCS
Sbjct: 167 TVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCS 218



 Score = 60.8 bits (146), Expect(2) = 3e-39
 Identities = 31/45 (68%), Positives = 34/45 (75%)
 Frame = +2

Query: 512 FYEALLFHLGMKNQSVKAAQEAVQKSEELDIRRSPTSVAVAVIYM 646
           F      +LGM NQ VKAAQEAVQKSEE DIRRSP S+A AVIY+
Sbjct: 212 FMRRFCSNLGMTNQVVKAAQEAVQKSEEFDIRRSPVSIAAAVIYI 256


>ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|297739630|emb|CBI29812.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  127 bits (320), Expect(2) = 3e-39
 Identities = 70/112 (62%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
 Frame = +3

Query: 201 LETIVDRSGQEIYVQIKYKMDRANEIYKKVVDHKSMRGRNLDAFLVACLFVVCHQEHKPR 380
           + T+ DR G  +   IK   DRANEIYKKV D KS RGRN DA L ACL++ C QE KPR
Sbjct: 112 IATMSDRLG--LVATIK---DRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPR 166

Query: 381 TVKEIHSIANGATKKEIGMNKFFMEKQLK-EIGESMETGATYAGDFMRRFCS 533
           TVKEI S+ANGATKKEIG  K ++ KQL+ E G+S+E G  +AGDFMRRFCS
Sbjct: 167 TVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCS 218



 Score = 60.8 bits (146), Expect(2) = 3e-39
 Identities = 31/45 (68%), Positives = 34/45 (75%)
 Frame = +2

Query: 512 FYEALLFHLGMKNQSVKAAQEAVQKSEELDIRRSPTSVAVAVIYM 646
           F      +LGM NQ VKAAQEAVQKSEE DIRRSP S+A AVIY+
Sbjct: 212 FMRRFCSNLGMTNQVVKAAQEAVQKSEEFDIRRSPVSIAAAVIYI 256


>emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
          Length = 312

 Score =  127 bits (320), Expect(2) = 3e-39
 Identities = 70/112 (62%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
 Frame = +3

Query: 201 LETIVDRSGQEIYVQIKYKMDRANEIYKKVVDHKSMRGRNLDAFLVACLFVVCHQEHKPR 380
           + T+ DR G  +   IK   DRANEIYKKV D KS RGRN DA L ACL++ C QE KPR
Sbjct: 112 IATMSDRLG--LVATIK---DRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPR 166

Query: 381 TVKEIHSIANGATKKEIGMNKFFMEKQLK-EIGESMETGATYAGDFMRRFCS 533
           TVKEI S+ANGATKKEIG  K ++ KQL+ E G+S+E G  +AGDFMRRFCS
Sbjct: 167 TVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCS 218



 Score = 60.8 bits (146), Expect(2) = 3e-39
 Identities = 31/45 (68%), Positives = 34/45 (75%)
 Frame = +2

Query: 512 FYEALLFHLGMKNQSVKAAQEAVQKSEELDIRRSPTSVAVAVIYM 646
           F      +LGM NQ VKAAQEAVQKSEE DIRRSP S+A AVIY+
Sbjct: 212 FMRRFCSNLGMTNQVVKAAQEAVQKSEEFDIRRSPVSIAAAVIYI 256


>ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
           gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName:
           Full=Transcription initiation factor IIB; AltName:
           Full=General transcription factor TFIIB
           gi|18481632|gb|AAL73491.1|AF464908_1 general
           transcription factor TFIIB [Oryza sativa]
           gi|50725809|dbj|BAD33339.1| Transcription initiation
           factor IIB [Oryza sativa Japonica Group]
           gi|50726577|dbj|BAD34211.1| Transcription initiation
           factor IIB [Oryza sativa Japonica Group]
           gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa
           Japonica Group] gi|125564497|gb|EAZ09877.1| hypothetical
           protein OsI_32170 [Oryza sativa Indica Group]
           gi|125606444|gb|EAZ45480.1| hypothetical protein
           OsJ_30135 [Oryza sativa Japonica Group]
           gi|347737122|gb|AEP20532.1| transcription factor [Oryza
           sativa Japonica Group]
          Length = 312

 Score =  132 bits (331), Expect = 1e-28
 Identities = 77/143 (53%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
 Frame = +3

Query: 261 DRANEIYKKVVDHKSMRGRNLDAFLVACLFVVCHQEHKPRTVKEIHSIANGATKKEIGMN 440
           DRANEIYKKV D KS+RGRN DA L ACL++ C QE +PRTVKEI S+ANGATKKEIG  
Sbjct: 127 DRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGRA 186

Query: 441 KFFMEKQLK-EIGESMETGATYAGDFMRRFCSI*AXXXXXXXXXXXQFRNQRSLI*GGAP 617
           K F+ KQL+ E+G+SME G  +AGDF+RRFCS                +    L    +P
Sbjct: 187 KEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSP 246

Query: 618 PQWQ*LLSTCMITQLSDDRKFLK 686
                     MITQLSDD+K LK
Sbjct: 247 ISIA-AAVIYMITQLSDDKKPLK 268


>ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
           gi|223547429|gb|EEF48924.1| transcription initiation
           factor iib, putative [Ricinus communis]
          Length = 312

 Score =  130 bits (328), Expect = 3e-28
 Identities = 80/163 (49%), Positives = 100/163 (61%), Gaps = 1/163 (0%)
 Frame = +3

Query: 201 LETIVDRSGQEIYVQIKYKMDRANEIYKKVVDHKSMRGRNLDAFLVACLFVVCHQEHKPR 380
           + T+ DR G  +   IK   DRANEIYKKV D K +RGRN DA L ACL++ C QE KPR
Sbjct: 112 IATMSDRLG--LVATIK---DRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPR 166

Query: 381 TVKEIHSIANGATKKEIGMNKFFMEKQLK-EIGESMETGATYAGDFMRRFCSI*AXXXXX 557
           TVKEI S+ANGATKKEIG  K ++ KQL+ E+G+SME G  +AGDF+RRFCS        
Sbjct: 167 TVKEICSVANGATKKEIGRAKEYIVKQLEVELGQSMEMGTIHAGDFLRRFCSHLGMNNQA 226

Query: 558 XXXXXXQFRNQRSLI*GGAPPQWQ*LLSTCMITQLSDDRKFLK 686
                   +    L    +P      +   MITQLS+++K LK
Sbjct: 227 VKAAQEAVKKSEELDIRRSPISIAAAI-IYMITQLSEEKKLLK 268