BLASTX nr result

ID: Coptis24_contig00011496 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011496
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308714.1| predicted protein [Populus trichocarpa] gi|2...    95   7e-18
ref|XP_002324341.1| predicted protein [Populus trichocarpa] gi|2...    88   6e-16
emb|CBI21155.3| unnamed protein product [Vitis vinifera]               87   1e-15
emb|CAN79213.1| hypothetical protein VITISV_025939 [Vitis vinifera]    87   1e-15
ref|XP_003531944.1| PREDICTED: U2 snRNP-associated SURP motif-co...    85   5e-15

>ref|XP_002308714.1| predicted protein [Populus trichocarpa] gi|222854690|gb|EEE92237.1|
           predicted protein [Populus trichocarpa]
          Length = 988

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 50/76 (65%), Positives = 56/76 (73%)
 Frame = -2

Query: 436 VVVYEYELKIGWDKSVSLPGQALPAPPLRQMAIRSKGVCLNISFQTFLLLLGATVILSGT 257
           V+VYEYELKIGW KSV+LP QALPAPP  QMAIRSK VC     +     +GATVILSG 
Sbjct: 254 VIVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEVCYGFLPKP----IGATVILSGP 309

Query: 256 AGPPVASVTNQGFELI 209
           +GPPV SV NQ  EL+
Sbjct: 310 SGPPVTSVPNQNSELV 325


>ref|XP_002324341.1| predicted protein [Populus trichocarpa] gi|222865775|gb|EEF02906.1|
           predicted protein [Populus trichocarpa]
          Length = 955

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 49/76 (64%), Positives = 52/76 (68%)
 Frame = -2

Query: 436 VVVYEYELKIGWDKSVSLPGQALPAPPLRQMAIRSKGVCLNISFQTFLLLLGATVILSGT 257
           VVVYEYELKIGW KSV+LP QALPAPP  QMAIRSK               GATVILSG 
Sbjct: 254 VVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKE--------------GATVILSGP 299

Query: 256 AGPPVASVTNQGFELI 209
           +GPPV SV NQ  EL+
Sbjct: 300 SGPPVTSVPNQNSELV 315


>emb|CBI21155.3| unnamed protein product [Vitis vinifera]
          Length = 941

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 49/76 (64%), Positives = 51/76 (67%)
 Frame = -2

Query: 436 VVVYEYELKIGWDKSVSLPGQALPAPPLRQMAIRSKGVCLNISFQTFLLLLGATVILSGT 257
           VVVYEYELKIGW KSVSLP QALPAPP   MAIRSK               GATVILSG 
Sbjct: 254 VVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKE--------------GATVILSGP 299

Query: 256 AGPPVASVTNQGFELI 209
           +GPPV SV NQ  EL+
Sbjct: 300 SGPPVTSVPNQNSELV 315


>emb|CAN79213.1| hypothetical protein VITISV_025939 [Vitis vinifera]
          Length = 1384

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 49/76 (64%), Positives = 51/76 (67%)
 Frame = -2

Query: 436 VVVYEYELKIGWDKSVSLPGQALPAPPLRQMAIRSKGVCLNISFQTFLLLLGATVILSGT 257
           VVVYEYELKIGW KSVSLP QALPAPP   MAIRSK               GATVILSG 
Sbjct: 414 VVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKE--------------GATVILSGP 459

Query: 256 AGPPVASVTNQGFELI 209
           +GPPV SV NQ  EL+
Sbjct: 460 SGPPVTSVPNQNSELV 475


>ref|XP_003531944.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like
           [Glycine max]
          Length = 972

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 47/76 (61%), Positives = 51/76 (67%)
 Frame = -2

Query: 436 VVVYEYELKIGWDKSVSLPGQALPAPPLRQMAIRSKGVCLNISFQTFLLLLGATVILSGT 257
           VVVYEYELKIGW KSV+LP QALPAPP   MAIRSK               G+TVILSG 
Sbjct: 254 VVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKE--------------GSTVILSGP 299

Query: 256 AGPPVASVTNQGFELI 209
           +GPPV SV NQ  EL+
Sbjct: 300 SGPPVTSVPNQNSELV 315


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