BLASTX nr result

ID: Coptis24_contig00011475 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011475
         (202 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632106.1| PREDICTED: glycine-rich RNA-binding protein ...    66   3e-09
ref|XP_003531992.1| PREDICTED: glycine-rich RNA-binding protein ...    65   8e-09
ref|NP_001236472.1| uncharacterized protein LOC100306540 [Glycin...    64   1e-08
gb|ACF74325.1| unknown [Arachis hypogaea]                              64   1e-08
ref|XP_002862718.1| hypothetical protein ARALYDRAFT_359421 [Arab...    58   7e-07

>ref|XP_003632106.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Vitis vinifera] gi|296084274|emb|CBI24662.3| unnamed
           protein product [Vitis vinifera]
          Length = 108

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 29/36 (80%), Positives = 35/36 (97%)
 Frame = +3

Query: 93  LSYDTNESVLKDAFGRHGELIEVKVICDRMSGKSKG 200
           LSYDTNE++LKDAFG++GE+IEVKVICD +SGKSKG
Sbjct: 36  LSYDTNETILKDAFGQYGEIIEVKVICDHVSGKSKG 71


>ref|XP_003531992.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Glycine max]
          Length = 146

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 28/36 (77%), Positives = 34/36 (94%)
 Frame = +3

Query: 93  LSYDTNESVLKDAFGRHGELIEVKVICDRMSGKSKG 200
           LSYDTNE VL+DAFG+HGE+IEVKVICD ++GKS+G
Sbjct: 65  LSYDTNEPVLRDAFGQHGEIIEVKVICDHVTGKSRG 100


>ref|NP_001236472.1| uncharacterized protein LOC100306540 [Glycine max]
           gi|255628821|gb|ACU14755.1| unknown [Glycine max]
          Length = 146

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 27/36 (75%), Positives = 34/36 (94%)
 Frame = +3

Query: 93  LSYDTNESVLKDAFGRHGELIEVKVICDRMSGKSKG 200
           LSYDTNE +L+DAFG+HGE+IEVKVICD ++GKS+G
Sbjct: 65  LSYDTNEPILRDAFGQHGEIIEVKVICDHVTGKSRG 100


>gb|ACF74325.1| unknown [Arachis hypogaea]
          Length = 112

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 29/36 (80%), Positives = 34/36 (94%)
 Frame = +3

Query: 93  LSYDTNESVLKDAFGRHGELIEVKVICDRMSGKSKG 200
           LSYDTNE+VL+DAF +HGELIEVKVICD ++GKSKG
Sbjct: 39  LSYDTNETVLRDAFEQHGELIEVKVICDHVTGKSKG 74


>ref|XP_002862718.1| hypothetical protein ARALYDRAFT_359421 [Arabidopsis lyrata subsp.
           lyrata] gi|297308404|gb|EFH38976.1| hypothetical protein
           ARALYDRAFT_359421 [Arabidopsis lyrata subsp. lyrata]
          Length = 113

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 27/36 (75%), Positives = 31/36 (86%)
 Frame = +3

Query: 93  LSYDTNESVLKDAFGRHGELIEVKVICDRMSGKSKG 200
           LSYDTNE VLK+ F ++GE+IEVKVICD  SGKSKG
Sbjct: 33  LSYDTNEPVLKNEFEKYGEVIEVKVICDHKSGKSKG 68


Top