BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011467
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]   146   2e-48
gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mi...   145   5e-48
gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella tric...   144   9e-48
gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]     143   1e-47
gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]     143   2e-47

>gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
          Length = 1009

 Score =  146 bits (369), Expect(2) = 2e-48
 Identities = 70/77 (90%), Positives = 74/77 (96%)
 Frame = -3

Query: 331 KSLSESNNLKAMVIAGSKGSSINISQMTACVGQQNVEGKRIPYGFNGRSLPHFTKDDYGP 152
           KSLSESNNLKAMV AGSKGS INISQMTACVGQQNVEGKRIPYGFNGR+LPHFTKDDYGP
Sbjct: 671 KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDYGP 730

Query: 151 ESRGFVENSYLQGLSPR 101
           E RGFVENSYL+GL+P+
Sbjct: 731 EXRGFVENSYLRGLTPQ 747



 Score = 71.2 bits (173), Expect(2) = 2e-48
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = -1

Query: 102 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 1
           EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 748 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 781


>gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
          Length = 1013

 Score =  145 bits (365), Expect(2) = 5e-48
 Identities = 70/77 (90%), Positives = 74/77 (96%)
 Frame = -3

Query: 331 KSLSESNNLKAMVIAGSKGSSINISQMTACVGQQNVEGKRIPYGFNGRSLPHFTKDDYGP 152
           KSLSESNNLKAMV AGSKGS INISQMTACVGQQNVEGKRIPYGFNGR+LPHFTKDD GP
Sbjct: 675 KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGP 734

Query: 151 ESRGFVENSYLQGLSPR 101
           ESRGFVENSYL+GL+P+
Sbjct: 735 ESRGFVENSYLRGLTPQ 751



 Score = 71.2 bits (173), Expect(2) = 5e-48
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = -1

Query: 102 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 1
           EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 752 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 785


>gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
          Length = 1013

 Score =  144 bits (363), Expect(2) = 9e-48
 Identities = 69/77 (89%), Positives = 74/77 (96%)
 Frame = -3

Query: 331 KSLSESNNLKAMVIAGSKGSSINISQMTACVGQQNVEGKRIPYGFNGRSLPHFTKDDYGP 152
           KSLSESNNLKAMV AGSKGS INISQMTACVGQQNVEGKRIP+GFN R+LPHFTKDDYGP
Sbjct: 675 KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGP 734

Query: 151 ESRGFVENSYLQGLSPR 101
           ESRGFVENSYL+GL+P+
Sbjct: 735 ESRGFVENSYLRGLTPQ 751



 Score = 71.2 bits (173), Expect(2) = 9e-48
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = -1

Query: 102 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 1
           EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 752 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 785


>gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
          Length = 1013

 Score =  143 bits (361), Expect(2) = 1e-47
 Identities = 69/77 (89%), Positives = 74/77 (96%)
 Frame = -3

Query: 331 KSLSESNNLKAMVIAGSKGSSINISQMTACVGQQNVEGKRIPYGFNGRSLPHFTKDDYGP 152
           KSLSESNNLKAMV AGSKGS INISQMTACVGQQNVEGKRIP+GF GRSLPHFT+DDYGP
Sbjct: 675 KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFFGRSLPHFTRDDYGP 734

Query: 151 ESRGFVENSYLQGLSPR 101
           ESRGFVENSYL+GL+P+
Sbjct: 735 ESRGFVENSYLRGLTPQ 751



 Score = 71.2 bits (173), Expect(2) = 1e-47
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = -1

Query: 102 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 1
           EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 752 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 785


>gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
          Length = 1013

 Score =  143 bits (360), Expect(2) = 2e-47
 Identities = 69/77 (89%), Positives = 74/77 (96%)
 Frame = -3

Query: 331 KSLSESNNLKAMVIAGSKGSSINISQMTACVGQQNVEGKRIPYGFNGRSLPHFTKDDYGP 152
           KSLSESNNLKAMV AGSKGS INISQMTACVGQQNVEGKRIPYGF+GR+LPHFTKDD GP
Sbjct: 675 KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRTLPHFTKDDKGP 734

Query: 151 ESRGFVENSYLQGLSPR 101
           ESRGFVENSYL+GL+P+
Sbjct: 735 ESRGFVENSYLRGLTPQ 751



 Score = 71.2 bits (173), Expect(2) = 2e-47
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = -1

Query: 102 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 1
           EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 752 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 785