BLASTX nr result
ID: Coptis24_contig00011460
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00011460
(255 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003637117.1| Pentatricopeptide repeat-containing protein,... 105 5e-21
ref|XP_002521241.1| pentatricopeptide repeat-containing protein,... 102 3e-20
ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containi... 99 3e-19
ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containi... 99 3e-19
emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera] 99 3e-19
>ref|XP_003637117.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula] gi|355503052|gb|AES84255.1|
Pentatricopeptide repeat-containing protein, partial
[Medicago truncatula]
Length = 592
Score = 105 bits (261), Expect = 5e-21
Identities = 49/71 (69%), Positives = 57/71 (80%)
Frame = -3
Query: 214 PHDYIHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDE 35
P NKKISHLIRTGRL A+ +FDS +RNTVTWNSMI+GY + REI KAR+LFDE
Sbjct: 35 PQSLYQLNKKISHLIRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDE 94
Query: 34 MPVRDVVSWNL 2
MP+RD+VSWNL
Sbjct: 95 MPLRDIVSWNL 105
Score = 56.2 bits (134), Expect = 3e-06
Identities = 23/66 (34%), Positives = 42/66 (63%)
Frame = -3
Query: 202 IHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEMPVR 23
+ WN + ++ G + A+ +FD + R+ +WN++I GY + ++ +A +LF EMP+
Sbjct: 278 VSWNSMMMCYVKAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEMPIP 337
Query: 22 DVVSWN 5
DV+SWN
Sbjct: 338 DVLSWN 343
>ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539509|gb|EEF41097.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 662
Score = 102 bits (254), Expect = 3e-20
Identities = 48/64 (75%), Positives = 54/64 (84%)
Frame = -3
Query: 193 NKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEMPVRDVV 14
NKKISH RTGR+NEA+ +FD L+ RNTVTWNSMISGY K E+ KAR+LFDEMP RDVV
Sbjct: 51 NKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMPERDVV 110
Query: 13 SWNL 2
SWNL
Sbjct: 111 SWNL 114
Score = 60.5 bits (145), Expect = 1e-07
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = -3
Query: 202 IHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEMPVR 23
+ WN IS + GR++EA +F+++ +N+V+WN+M+SG+ +N ++ +A F MP R
Sbjct: 144 VSWNTMISGYAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPER 203
Query: 22 DVVS 11
DV S
Sbjct: 204 DVTS 207
Score = 57.8 bits (138), Expect = 9e-07
Identities = 25/67 (37%), Positives = 42/67 (62%)
Frame = -3
Query: 202 IHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEMPVR 23
+ WN I ++ G + A+++FD + R++ +WN+MISGY ++ +A LF +MP
Sbjct: 287 VSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTMISGYVHVLDMEEASNLFHKMPSP 346
Query: 22 DVVSWNL 2
D +SWNL
Sbjct: 347 DTLSWNL 353
Score = 57.0 bits (136), Expect = 2e-06
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 14/89 (15%)
Frame = -3
Query: 229 NLSSSPHDYIH-WNKKISHLIRTGRLNEAKRVFDSLQY-------------RNTVTWNSM 92
N S +H +N I+ + GR++EA+ +FD + + RN V+WN+M
Sbjct: 233 NNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSWNTM 292
Query: 91 ISGYGKNREIFKARRLFDEMPVRDVVSWN 5
I Y K ++ AR+LFD+MP RD SWN
Sbjct: 293 IMCYVKAGDVISARKLFDQMPDRDSFSWN 321
Score = 55.8 bits (133), Expect = 4e-06
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Frame = -3
Query: 208 DYIHWNKKISHLIRT-GR--LNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFD 38
D + WN IS + G+ + E + +FD + R V+WN+MISGY KN + +A LF+
Sbjct: 108 DVVSWNLIISGYVSCRGKRFIEEGRNLFDKMPERCCVSWNTMISGYAKNGRMDEALGLFN 167
Query: 37 EMPVRDVVSWN 5
MP ++ VSWN
Sbjct: 168 TMPEKNSVSWN 178
>ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 649
Score = 99.4 bits (246), Expect = 3e-19
Identities = 49/78 (62%), Positives = 65/78 (83%)
Frame = -3
Query: 235 SRNLSSSPHDYIHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFK 56
+ N +SSP + NKK+S+LIR+GR++EA+ +FDS++ R+TVTWNSMISGY + REI +
Sbjct: 30 THNYNSSPLNQS--NKKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIAR 87
Query: 55 ARRLFDEMPVRDVVSWNL 2
AR+LFDEMP RDVVSWNL
Sbjct: 88 ARQLFDEMPRRDVVSWNL 105
Score = 55.5 bits (132), Expect = 5e-06
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = -3
Query: 208 DYIHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEM 32
D + WN IS L + G LN AK F+ + ++N ++WN++I+GY KN + A +LF EM
Sbjct: 338 DVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAIKLFSEM 396
>ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial [Vitis vinifera]
Length = 681
Score = 99.4 bits (246), Expect = 3e-19
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = -3
Query: 193 NKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEMPVRDVV 14
NK+ISHLIR GR+NEA+ +FD++ RN VTWNSMI+GY + RE+ KAR+LFDEMP RDVV
Sbjct: 71 NKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVV 130
Query: 13 SWNL 2
SWNL
Sbjct: 131 SWNL 134
Score = 65.9 bits (159), Expect = 3e-09
Identities = 29/66 (43%), Positives = 45/66 (68%)
Frame = -3
Query: 208 DYIHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEMP 29
D + WN IS R+GR++EA ++FDS+Q RN V+WN+M++G+ +N ++ +A F MP
Sbjct: 161 DCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMP 220
Query: 28 VRDVVS 11
RD S
Sbjct: 221 ERDSAS 226
Score = 64.7 bits (156), Expect = 8e-09
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Frame = -3
Query: 241 VTSRNLSSSPHDYIH-WNKKISHLIRTGRLNEAKRVFDSLQY------------RNTVTW 101
+TSR D +H +N ++ + GR+++A+++FD + + RN V+W
Sbjct: 248 LTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSW 307
Query: 100 NSMISGYGKNREIFKARRLFDEMPVRDVVSWN 5
NSMI Y K R+IF AR LFD+M RD +SWN
Sbjct: 308 NSMIMCYVKARDIFSARVLFDQMKERDTISWN 339
Score = 60.8 bits (146), Expect = 1e-07
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = -3
Query: 244 YVTSRNLSSS--------PHDYIHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMI 89
YV +R++ S+ D I WN IS +R + EA +F + +T+TWNSMI
Sbjct: 314 YVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMI 373
Query: 88 SGYGKNREIFKARRLFDEMPVRDVVSWN 5
SG+ + + AR LF +P +++VSWN
Sbjct: 374 SGFAQKGNLELARALFATIPQKNLVSWN 401
Score = 59.7 bits (143), Expect = 2e-07
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Frame = -3
Query: 250 TPYVTSRNLSSS--------PHDYIHWNKKISHLIRT-GR-LNEAKRVFDSLQYRNTVTW 101
T YV R ++ + D + WN IS + GR + E + +FD + R+ V+W
Sbjct: 106 TGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSW 165
Query: 100 NSMISGYGKNREIFKARRLFDEMPVRDVVSWN 5
N+MISGY ++ + +A +LFD M R+VVSWN
Sbjct: 166 NTMISGYTRSGRMDEALQLFDSMQERNVVSWN 197
Score = 57.4 bits (137), Expect = 1e-06
Identities = 24/66 (36%), Positives = 42/66 (63%)
Frame = -3
Query: 202 IHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEMPVR 23
+ WN I ++ + A+ +FD ++ R+T++WN+MISGY + ++ +A LF EMP
Sbjct: 305 VSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNP 364
Query: 22 DVVSWN 5
D ++WN
Sbjct: 365 DTLTWN 370
>emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]
Length = 761
Score = 99.4 bits (246), Expect = 3e-19
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = -3
Query: 193 NKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEMPVRDVV 14
NK+ISHLIR GR+NEA+ +FD++ RN VTWNSMI+GY + RE+ KAR+LFDEMP RDVV
Sbjct: 71 NKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVV 130
Query: 13 SWNL 2
SWNL
Sbjct: 131 SWNL 134
Score = 65.9 bits (159), Expect = 3e-09
Identities = 29/66 (43%), Positives = 45/66 (68%)
Frame = -3
Query: 208 DYIHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEMP 29
D + WN IS R+GR++EA ++FDS+Q RN V+WN+M++G+ +N ++ +A F MP
Sbjct: 161 DCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMP 220
Query: 28 VRDVVS 11
RD S
Sbjct: 221 ERDSAS 226
Score = 63.5 bits (153), Expect = 2e-08
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Frame = -3
Query: 241 VTSRNLSSSPHDYIH-WNKKISHLIRTGRLNEAKRVFDSLQY------------RNTVTW 101
+T+R D +H +N ++ + GR+++A+++FD + + RN V+W
Sbjct: 248 LTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSW 307
Query: 100 NSMISGYGKNREIFKARRLFDEMPVRDVVSWN 5
NSMI Y K R+IF AR LFD+M RD +SWN
Sbjct: 308 NSMIMCYVKARDIFSARVLFDQMKERDTISWN 339
Score = 60.8 bits (146), Expect = 1e-07
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = -3
Query: 244 YVTSRNLSSS--------PHDYIHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMI 89
YV +R++ S+ D I WN IS +R + EA +F + +T+TWNSMI
Sbjct: 314 YVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMI 373
Query: 88 SGYGKNREIFKARRLFDEMPVRDVVSWN 5
SG+ + + AR LF +P +++VSWN
Sbjct: 374 SGFAQKGNLELARALFATIPQKNLVSWN 401
Score = 59.7 bits (143), Expect = 2e-07
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Frame = -3
Query: 250 TPYVTSRNLSSS--------PHDYIHWNKKISHLIRT-GR-LNEAKRVFDSLQYRNTVTW 101
T YV R ++ + D + WN IS + GR + E + +FD + R+ V+W
Sbjct: 106 TGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPERDCVSW 165
Query: 100 NSMISGYGKNREIFKARRLFDEMPVRDVVSWN 5
N+MISGY ++ + +A +LFD M R+VVSWN
Sbjct: 166 NTMISGYTRSGRMDEALQLFDSMQERNVVSWN 197
Score = 57.4 bits (137), Expect = 1e-06
Identities = 24/66 (36%), Positives = 42/66 (63%)
Frame = -3
Query: 202 IHWNKKISHLIRTGRLNEAKRVFDSLQYRNTVTWNSMISGYGKNREIFKARRLFDEMPVR 23
+ WN I ++ + A+ +FD ++ R+T++WN+MISGY + ++ +A LF EMP
Sbjct: 305 VSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNP 364
Query: 22 DVVSWN 5
D ++WN
Sbjct: 365 DTLTWN 370