BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011452
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABB53402.1| RNA polymerase II largest subunit [Platanus orien...   206   2e-51
gb|ABB53390.1| RNA polymerase II largest subunit [Cissus tuberosa]    204   8e-51
gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]     203   1e-50
gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron t...   203   1e-50
gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum ...   203   1e-50

>gb|ABB53402.1| RNA polymerase II largest subunit [Platanus orientalis]
          Length = 240

 Score =  206 bits (523), Expect = 2e-51
 Identities = 95/117 (81%), Positives = 106/117 (90%)
 Frame = -1

Query: 351 VKYDGTVRNSLGDVVQFLYGEDGIDAVWIESQTLDSLNMKKSEFDEAFRYELHNENWNPS 172
           VKYDGTVRNSLGDV+QFLYGEDG+DAVWIESQ LDSL MKKSEFD+ FRYE+ NENWNPS
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFRYEIDNENWNPS 79

Query: 171 YILPEHVEGLKTVAEFRNLLDAEFQKLESDRYQLRMEIATGGDHSWPMPVNLKRLIW 1
           Y+LPEHVE LKT+ EFRN+ DAE QKLE+DR+QL  EIAT GD++WPMPVNLKRLIW
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIW 136


>gb|ABB53390.1| RNA polymerase II largest subunit [Cissus tuberosa]
          Length = 240

 Score =  204 bits (518), Expect = 8e-51
 Identities = 94/117 (80%), Positives = 105/117 (89%)
 Frame = -1

Query: 351 VKYDGTVRNSLGDVVQFLYGEDGIDAVWIESQTLDSLNMKKSEFDEAFRYELHNENWNPS 172
           VKYDGTVRNSLGDV+QFLYGEDG+DAVWIESQ LDSL MKK+EFD  F+YE+ +ENWNPS
Sbjct: 20  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDRVFKYEIDDENWNPS 79

Query: 171 YILPEHVEGLKTVAEFRNLLDAEFQKLESDRYQLRMEIATGGDHSWPMPVNLKRLIW 1
           Y+LPEHVE LKT+ EFRN+ DAE QKLE+DRYQL  EIAT GD+SWPMPVNLKRLIW
Sbjct: 80  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 136


>gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
          Length = 1010

 Score =  203 bits (517), Expect = 1e-50
 Identities = 93/117 (79%), Positives = 105/117 (89%)
 Frame = -1

Query: 351  VKYDGTVRNSLGDVVQFLYGEDGIDAVWIESQTLDSLNMKKSEFDEAFRYELHNENWNPS 172
            VKYDGTVRNSLGDV+QFLYGEDG+D+VWIESQ LDSL MKK+EFD  FRYE+ N+NWNPS
Sbjct: 787  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFDNVFRYEIDNDNWNPS 846

Query: 171  YILPEHVEGLKTVAEFRNLLDAEFQKLESDRYQLRMEIATGGDHSWPMPVNLKRLIW 1
            Y++PEHVE LKT+ EFRN+ DAE QKLE+DRYQL  EIAT GD+SWPMPVNLKRLIW
Sbjct: 847  YMVPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGSEIATTGDNSWPMPVNLKRLIW 903


>gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
          Length = 1010

 Score =  203 bits (516), Expect = 1e-50
 Identities = 95/117 (81%), Positives = 102/117 (87%)
 Frame = -1

Query: 351  VKYDGTVRNSLGDVVQFLYGEDGIDAVWIESQTLDSLNMKKSEFDEAFRYELHNENWNPS 172
            VKYDGTVRNSLGDV+QFLYGEDG+DAVWIESQ LDSL MKK EFD  FRYE  N NWNPS
Sbjct: 787  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846

Query: 171  YILPEHVEGLKTVAEFRNLLDAEFQKLESDRYQLRMEIATGGDHSWPMPVNLKRLIW 1
            Y+LPEHVE LKT+ EFRN+ DAE QKLE+DRYQL  EIAT GD+SWPMPVNLKRLIW
Sbjct: 847  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903


>gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
          Length = 1010

 Score =  203 bits (516), Expect = 1e-50
 Identities = 95/117 (81%), Positives = 102/117 (87%)
 Frame = -1

Query: 351  VKYDGTVRNSLGDVVQFLYGEDGIDAVWIESQTLDSLNMKKSEFDEAFRYELHNENWNPS 172
            VKYDGTVRNSLGDV+QFLYGEDG+DAVWIESQ LDSL MKK EFD  FRYE  N NWNPS
Sbjct: 787  VKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDNANWNPS 846

Query: 171  YILPEHVEGLKTVAEFRNLLDAEFQKLESDRYQLRMEIATGGDHSWPMPVNLKRLIW 1
            Y+LPEHVE LKT+ EFRN+ DAE QKLE+DRYQL  EIAT GD+SWPMPVNLKRLIW
Sbjct: 847  YMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903