BLASTX nr result
ID: Coptis24_contig00011423
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00011423
(452 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003569739.1| PREDICTED: valyl-tRNA synthetase-like [Brach... 115 4e-40
ref|XP_004163107.1| PREDICTED: valine--tRNA ligase-like [Cucumis... 125 4e-27
ref|XP_004143624.1| PREDICTED: valine--tRNA ligase-like [Cucumis... 125 4e-27
ref|XP_002275092.2| PREDICTED: valyl-tRNA synthetase-like [Vitis... 124 6e-27
emb|CBI31848.3| unnamed protein product [Vitis vinifera] 124 6e-27
>ref|XP_003569739.1| PREDICTED: valyl-tRNA synthetase-like [Brachypodium distachyon]
Length = 1043
Score = 115 bits (288), Expect(3) = 4e-40
Identities = 54/74 (72%), Positives = 61/74 (82%)
Frame = +1
Query: 178 NPSHVEKSWYDWWDKSGFFVPDAASSSKPSFVVVLPPPNVTGALHIGHALTTAIQDTIVR 357
NPS VEKSWY WW+ SG F D ASS KP FV+VLPPPNVTGALHIGHALT AI+DT++R
Sbjct: 86 NPSAVEKSWYAWWESSGNFGADPASS-KPPFVIVLPPPNVTGALHIGHALTVAIEDTMIR 144
Query: 358 WRRMSGHNTLCLCG 399
WRRMSG+N L + G
Sbjct: 145 WRRMSGYNALWVPG 158
Score = 54.7 bits (130), Expect(3) = 4e-40
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +3
Query: 33 ASSSTSNKSEKKGARRCGGEEENAEDFLDPQTPLGEKKQLSTKMERQY*P 182
A+S KSEKK R+ G E+EN EDF+DP TP GEKK L+ +M +QY P
Sbjct: 39 AASDGPKKSEKK-QRKKGAEDENPEDFIDPDTPSGEKKLLAHQMAKQYNP 87
Score = 40.4 bits (93), Expect(3) = 4e-40
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +3
Query: 390 SLWIPRTDHAGIATQVVVEKK 452
+LW+P DHAGIATQVVVEKK
Sbjct: 153 ALWVPGVDHAGIATQVVVEKK 173
>ref|XP_004163107.1| PREDICTED: valine--tRNA ligase-like [Cucumis sativus]
Length = 1045
Score = 125 bits (314), Expect = 4e-27
Identities = 57/74 (77%), Positives = 65/74 (87%)
Frame = +1
Query: 178 NPSHVEKSWYDWWDKSGFFVPDAASSSKPSFVVVLPPPNVTGALHIGHALTTAIQDTIVR 357
NPS VEKSWY+WW+KSG+FV DA SSKP FV+VLPPPNVTGALHIGHALT AI+D I+R
Sbjct: 90 NPSAVEKSWYEWWEKSGYFVADA-KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDAIIR 148
Query: 358 WRRMSGHNTLCLCG 399
WRRMSG+NTL + G
Sbjct: 149 WRRMSGYNTLWVPG 162
Score = 79.0 bits (193), Expect = 4e-13
Identities = 54/139 (38%), Positives = 71/139 (51%)
Frame = +3
Query: 36 SSSTSNKSEKKGARRCGGEEENAEDFLDPQTPLGEKKQLSTKMERQY*P*PCREIMVRLV 215
+S+ KSEKK ARR GG+EENAEDF+DP TP G+KK L+ +M +QY P +
Sbjct: 44 TSNAPKKSEKKNARR-GGDEENAEDFVDPDTPFGKKKLLAQQMAKQYNPSAVEKSWYEWW 102
Query: 216 GQIRFLCARCCFQLETLVCSCSTATKCHWGSTHRPCPHYCYSGHNSPLAENVRS*YFVSL 395
+ + A V G+ H H + + R + +L
Sbjct: 103 EKSGYFVADAKSSKPPFVIVLPPPNVT--GALH--IGHALTAAIEDAIIRWRRMSGYNTL 158
Query: 396 WIPRTDHAGIATQVVVEKK 452
W+P TDHAGIATQVVVEKK
Sbjct: 159 WVPGTDHAGIATQVVVEKK 177
>ref|XP_004143624.1| PREDICTED: valine--tRNA ligase-like [Cucumis sativus]
Length = 1045
Score = 125 bits (314), Expect = 4e-27
Identities = 57/74 (77%), Positives = 65/74 (87%)
Frame = +1
Query: 178 NPSHVEKSWYDWWDKSGFFVPDAASSSKPSFVVVLPPPNVTGALHIGHALTTAIQDTIVR 357
NPS VEKSWY+WW+KSG+FV DA SSKP FV+VLPPPNVTGALHIGHALT AI+D I+R
Sbjct: 90 NPSAVEKSWYEWWEKSGYFVADA-KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDAIIR 148
Query: 358 WRRMSGHNTLCLCG 399
WRRMSG+NTL + G
Sbjct: 149 WRRMSGYNTLWVPG 162
Score = 79.0 bits (193), Expect = 4e-13
Identities = 54/139 (38%), Positives = 71/139 (51%)
Frame = +3
Query: 36 SSSTSNKSEKKGARRCGGEEENAEDFLDPQTPLGEKKQLSTKMERQY*P*PCREIMVRLV 215
+S+ KSEKK ARR GG+EENAEDF+DP TP G+KK L+ +M +QY P +
Sbjct: 44 TSNAPKKSEKKNARR-GGDEENAEDFVDPDTPFGKKKLLAQQMAKQYNPSAVEKSWYEWW 102
Query: 216 GQIRFLCARCCFQLETLVCSCSTATKCHWGSTHRPCPHYCYSGHNSPLAENVRS*YFVSL 395
+ + A V G+ H H + + R + +L
Sbjct: 103 EKSGYFVADAKSSKPPFVIVLPPPNVT--GALH--IGHALTAAIEDAIIRWRRMSGYNTL 158
Query: 396 WIPRTDHAGIATQVVVEKK 452
W+P TDHAGIATQVVVEKK
Sbjct: 159 WVPGTDHAGIATQVVVEKK 177
>ref|XP_002275092.2| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera]
Length = 1071
Score = 124 bits (312), Expect = 6e-27
Identities = 57/74 (77%), Positives = 66/74 (89%)
Frame = +1
Query: 178 NPSHVEKSWYDWWDKSGFFVPDAASSSKPSFVVVLPPPNVTGALHIGHALTTAIQDTIVR 357
+PS VE SWY+WW+KSGFFV D+ SSSKP FV+VLPPPNVTGALHIGHALT+AIQDTI+R
Sbjct: 105 SPSAVENSWYEWWEKSGFFVADS-SSSKPPFVIVLPPPNVTGALHIGHALTSAIQDTIIR 163
Query: 358 WRRMSGHNTLCLCG 399
WRRMSG+N L + G
Sbjct: 164 WRRMSGYNALWVPG 177
Score = 74.3 bits (181), Expect = 9e-12
Identities = 54/141 (38%), Positives = 69/141 (48%)
Frame = +3
Query: 30 KASSSTSNKSEKKGARRCGGEEENAEDFLDPQTPLGEKKQLSTKMERQY*P*PCREIMVR 209
+ASS+ S KSE+K R GE NAED++DP+TP GEKK+LS +M +QY P
Sbjct: 58 QASSNASKKSERKIKRDAEGE--NAEDYIDPETPFGEKKRLSRQMAKQYSPSAVENSWYE 115
Query: 210 LVGQIRFLCARCCFQLETLVCSCSTATKCHWGSTHRPCPHYCYSGHNSPLAENVRS*YFV 389
+ F A V G+ H H S + R +
Sbjct: 116 WWEKSGFFVADSSSSKPPFVIVLPPPNVT--GALH--IGHALTSAIQDTIIRWRRMSGYN 171
Query: 390 SLWIPRTDHAGIATQVVVEKK 452
+LW+P DHAGIATQVVVEKK
Sbjct: 172 ALWVPGMDHAGIATQVVVEKK 192
>emb|CBI31848.3| unnamed protein product [Vitis vinifera]
Length = 1106
Score = 124 bits (312), Expect = 6e-27
Identities = 57/74 (77%), Positives = 66/74 (89%)
Frame = +1
Query: 178 NPSHVEKSWYDWWDKSGFFVPDAASSSKPSFVVVLPPPNVTGALHIGHALTTAIQDTIVR 357
+PS VE SWY+WW+KSGFFV D+ SSSKP FV+VLPPPNVTGALHIGHALT+AIQDTI+R
Sbjct: 140 SPSAVENSWYEWWEKSGFFVADS-SSSKPPFVIVLPPPNVTGALHIGHALTSAIQDTIIR 198
Query: 358 WRRMSGHNTLCLCG 399
WRRMSG+N L + G
Sbjct: 199 WRRMSGYNALWVPG 212
Score = 74.3 bits (181), Expect = 9e-12
Identities = 54/141 (38%), Positives = 69/141 (48%)
Frame = +3
Query: 30 KASSSTSNKSEKKGARRCGGEEENAEDFLDPQTPLGEKKQLSTKMERQY*P*PCREIMVR 209
+ASS+ S KSE+K R GE NAED++DP+TP GEKK+LS +M +QY P
Sbjct: 93 QASSNASKKSERKIKRDAEGE--NAEDYIDPETPFGEKKRLSRQMAKQYSPSAVENSWYE 150
Query: 210 LVGQIRFLCARCCFQLETLVCSCSTATKCHWGSTHRPCPHYCYSGHNSPLAENVRS*YFV 389
+ F A V G+ H H S + R +
Sbjct: 151 WWEKSGFFVADSSSSKPPFVIVLPPPNVT--GALH--IGHALTSAIQDTIIRWRRMSGYN 206
Query: 390 SLWIPRTDHAGIATQVVVEKK 452
+LW+P DHAGIATQVVVEKK
Sbjct: 207 ALWVPGMDHAGIATQVVVEKK 227