BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011419
         (408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|2...   106   3e-43
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   105   1e-42
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   103   2e-42
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [...   102   3e-42
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   105   4e-42

>ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|222850273|gb|EEE87820.1|
           predicted protein [Populus trichocarpa]
          Length = 346

 Score =  106 bits (265), Expect(2) = 3e-43
 Identities = 54/61 (88%), Positives = 57/61 (93%)
 Frame = -3

Query: 331 MEGAKNQRFPKIKIREMKDDYLKFELRKTDASMANALRRVMLAEVPTIAIDLVEIEVNST 152
           ME    QRFPKIKIREMKDDYLKFELR+TDASMANALRRVM+AEVPTIAIDLVEIEVNS+
Sbjct: 1   MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 151 V 149
           V
Sbjct: 61  V 61



 Score = 94.0 bits (232), Expect(2) = 3e-43
 Identities = 41/51 (80%), Positives = 45/51 (88%)
 Frame = -1

Query: 153 LSHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQT 1
           ++HRLGLIPLTS+RAM MRFSRDCDACDGDGQCEYCSVEF L  +C  DQT
Sbjct: 67  IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQT 117


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  105 bits (261), Expect(2) = 1e-42
 Identities = 52/61 (85%), Positives = 57/61 (93%)
 Frame = -3

Query: 331 MEGAKNQRFPKIKIREMKDDYLKFELRKTDASMANALRRVMLAEVPTIAIDLVEIEVNST 152
           MEGA  QRFP+IKIRE+KDDY KFELR TDASMANALRRVM+AEVPT+AIDLVEIEVNS+
Sbjct: 1   MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 151 V 149
           V
Sbjct: 61  V 61



 Score = 93.2 bits (230), Expect(2) = 1e-42
 Identities = 40/51 (78%), Positives = 45/51 (88%)
 Frame = -1

Query: 153 LSHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQT 1
           ++HRLGLIPLTS+RAM MRFSRDCDACDGDGQC+YCSVEF L  +C  DQT
Sbjct: 67  IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQT 117


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cucumis sativus]
          Length = 320

 Score =  103 bits (258), Expect(2) = 2e-42
 Identities = 51/61 (83%), Positives = 57/61 (93%)
 Frame = -3

Query: 331 MEGAKNQRFPKIKIREMKDDYLKFELRKTDASMANALRRVMLAEVPTIAIDLVEIEVNST 152
           MEG+  QRFPK+KIRE++DDY KFELR TDASMANALRRVM+AEVPTIAIDLVEIEVNS+
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 151 V 149
           V
Sbjct: 61  V 61



 Score = 94.0 bits (232), Expect(2) = 2e-42
 Identities = 40/51 (78%), Positives = 45/51 (88%)
 Frame = -1

Query: 153 LSHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQT 1
           ++HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEF L  +C  DQT
Sbjct: 67  IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117


>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
           thaliana] gi|11134646|sp|Q39211.1|RPB3A_ARATH RecName:
           Full=DNA-directed RNA polymerase II subunit RPB3-A;
           Short=RNA polymerase II subunit 3-A; Short=RNA
           polymerase II subunit B3-A; AltName: Full=DNA-directed
           RNA polymerase II 36 kDa polypeptide A
           gi|514318|gb|AAB03741.1| RNA polymerase II third largest
           subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
           DNA-directed RNA polymerase II, third largest subunit
           [Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
           putative DNA-directed RNA polymerase II third largest
           subunit [Arabidopsis thaliana]
           gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
           polymerase II [Arabidopsis thaliana]
           gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
           II subunit RPB3-A [Arabidopsis thaliana]
          Length = 319

 Score =  102 bits (255), Expect(2) = 3e-42
 Identities = 50/61 (81%), Positives = 57/61 (93%)
 Frame = -3

Query: 331 MEGAKNQRFPKIKIREMKDDYLKFELRKTDASMANALRRVMLAEVPTIAIDLVEIEVNST 152
           M+GA  QRFPKIKIRE+KDDY KFELR+TD SMANALRRVM++EVPT+AIDLVEIEVNS+
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 151 V 149
           V
Sbjct: 61  V 61



 Score = 94.4 bits (233), Expect(2) = 3e-42
 Identities = 41/51 (80%), Positives = 47/51 (92%)
 Frame = -1

Query: 153 LSHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQT 1
           ++HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEF+LS +C  DQT
Sbjct: 67  IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQT 117


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  105 bits (261), Expect(2) = 4e-42
 Identities = 52/61 (85%), Positives = 57/61 (93%)
 Frame = -3

Query: 331 MEGAKNQRFPKIKIREMKDDYLKFELRKTDASMANALRRVMLAEVPTIAIDLVEIEVNST 152
           MEG   QRFPKIKIRE+KDDY KFELR+TDASMANALRRVM+AEVPT+AIDLVEIEVNS+
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 151 V 149
           V
Sbjct: 61  V 61



 Score = 91.7 bits (226), Expect(2) = 4e-42
 Identities = 39/51 (76%), Positives = 45/51 (88%)
 Frame = -1

Query: 153 LSHRLGLIPLTSDRAMDMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQT 1
           ++HRLGLIPLTS+RAM MRFSRDCDACDGDGQCE+CSVEF L  +C  D+T
Sbjct: 67  IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDET 117