BLASTX nr result
ID: Coptis24_contig00011388
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00011388 (346 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EME27522.1| 50S ribosomal protein L2 (plastid) [Galdieria sul... 60 1e-07 ref|XP_002444624.1| hypothetical protein SORBIDRAFT_07g024980 [S... 60 2e-07 ref|XP_002438950.1| hypothetical protein SORBIDRAFT_10g028830 [S... 60 2e-07 ref|NP_001141733.1| uncharacterized protein LOC100273864 [Zea ma... 60 2e-07 gb|ACF86952.1| unknown [Zea mays] 60 2e-07 >gb|EME27522.1| 50S ribosomal protein L2 (plastid) [Galdieria sulphuraria] Length = 345 Score = 60.5 bits (145), Expect = 1e-07 Identities = 27/45 (60%), Positives = 29/45 (64%) Frame = -2 Query: 342 GIRPHVRGVAMNPVDHPHXXXXXXXXXXXXXXSPWGKPTKCGYRS 208 G RPHVRGVAMNPVDHPH S WGKPTKCGY++ Sbjct: 277 GRRPHVRGVAMNPVDHPHGGGEGRTSGGRPSVSAWGKPTKCGYKT 321 >ref|XP_002444624.1| hypothetical protein SORBIDRAFT_07g024980 [Sorghum bicolor] gi|241940974|gb|EES14119.1| hypothetical protein SORBIDRAFT_07g024980 [Sorghum bicolor] Length = 450 Score = 59.7 bits (143), Expect = 2e-07 Identities = 29/46 (63%), Positives = 29/46 (63%) Frame = -2 Query: 345 LGIRPHVRGVAMNPVDHPHXXXXXXXXXXXXXXSPWGKPTKCGYRS 208 LG RP VRGVAMNPVDHPH SPWGKPTK GYRS Sbjct: 397 LGRRPIVRGVAMNPVDHPHGGGEGRTKGGRPSVSPWGKPTKAGYRS 442 >ref|XP_002438950.1| hypothetical protein SORBIDRAFT_10g028830 [Sorghum bicolor] gi|241917173|gb|EER90317.1| hypothetical protein SORBIDRAFT_10g028830 [Sorghum bicolor] Length = 434 Score = 59.7 bits (143), Expect = 2e-07 Identities = 29/46 (63%), Positives = 29/46 (63%) Frame = -2 Query: 345 LGIRPHVRGVAMNPVDHPHXXXXXXXXXXXXXXSPWGKPTKCGYRS 208 LG RP VRGVAMNPVDHPH SPWGKPTK GYRS Sbjct: 380 LGRRPVVRGVAMNPVDHPHGGGEGRTKGGRPSVSPWGKPTKAGYRS 425 >ref|NP_001141733.1| uncharacterized protein LOC100273864 [Zea mays] gi|195607472|gb|ACG25566.1| hypothetical protein [Zea mays] Length = 448 Score = 59.7 bits (143), Expect = 2e-07 Identities = 29/46 (63%), Positives = 29/46 (63%) Frame = -2 Query: 345 LGIRPHVRGVAMNPVDHPHXXXXXXXXXXXXXXSPWGKPTKCGYRS 208 LG RP VRGVAMNPVDHPH SPWGKPTK GYRS Sbjct: 384 LGRRPVVRGVAMNPVDHPHGGGEGRTKGGRPSVSPWGKPTKAGYRS 429 >gb|ACF86952.1| unknown [Zea mays] Length = 125 Score = 59.7 bits (143), Expect = 2e-07 Identities = 29/46 (63%), Positives = 29/46 (63%) Frame = -2 Query: 345 LGIRPHVRGVAMNPVDHPHXXXXXXXXXXXXXXSPWGKPTKCGYRS 208 LG RP VRGVAMNPVDHPH SPWGKPTK GYRS Sbjct: 61 LGRRPVVRGVAMNPVDHPHGGGEGRTKGGRPSVSPWGKPTKAGYRS 106