BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011358
         (591 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003519077.1| PREDICTED: transcription initiation factor I...   311   5e-83
ref|XP_002269045.1| PREDICTED: transcription initiation factor I...   310   1e-82
ref|XP_002284342.1| PREDICTED: transcription initiation factor I...   310   1e-82
ref|NP_001238343.1| transcription initiation factor IIB [Glycine...   306   1e-81
ref|XP_002534470.1| transcription initiation factor iib, putativ...   303   1e-80

>ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
          Length = 314

 Score =  311 bits (797), Expect = 5e-83
 Identities = 150/180 (83%), Positives = 161/180 (89%)
 Frame = +2

Query: 50  DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 229
           D++C+DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDPNRVGGP
Sbjct: 3   DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGP 62

Query: 230 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMSDRLN 409
           SNPLLTDGGLSTVI+KPN              RWQNRGSNPDR+LI+AFK+IA MSDRL 
Sbjct: 63  SNPLLTDGGLSTVIAKPNGGGGGGEFLSSSLGRWQNRGSNPDRALIIAFKTIATMSDRLG 122

Query: 410 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 589
           LVATIKDRANEIYK+VEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 123 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 182


>ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|296088031|emb|CBI35314.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  310 bits (794), Expect = 1e-82
 Identities = 153/180 (85%), Positives = 160/180 (88%)
 Frame = +2

Query: 50  DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 229
           D++CTDCKKNTEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3   DAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 230 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMSDRLN 409
           SNPLLTDGGLSTVI+KPN              RWQNRGSNPDR LI+AFK+IA MSDRL 
Sbjct: 63  SNPLLTDGGLSTVIAKPNGVSGDFLSSSLG--RWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 410 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 589
           LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180


>ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|297739630|emb|CBI29812.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  310 bits (794), Expect = 1e-82
 Identities = 153/180 (85%), Positives = 160/180 (88%)
 Frame = +2

Query: 50  DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 229
           D++CTDCKKNTEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3   DAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 230 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMSDRLN 409
           SNPLLTDGGLSTVI+KPN              RWQNRGSNPDR LI+AFK+IA MSDRL 
Sbjct: 63  SNPLLTDGGLSTVIAKPNGVSGDFLSSSLG--RWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 410 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 589
           LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180


>ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
           gi|1351222|sp|P48513.1|TF2B_SOYBN RecName:
           Full=Transcription initiation factor IIB; AltName:
           Full=General transcription factor TFIIB
           gi|945087|gb|AAB09756.1| transcription factor TFIIB
           [Glycine max]
          Length = 313

 Score =  306 bits (785), Expect = 1e-81
 Identities = 150/180 (83%), Positives = 160/180 (88%)
 Frame = +2

Query: 50  DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 229
           D++C+DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDPNRVGGP
Sbjct: 3   DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGP 62

Query: 230 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMSDRLN 409
           SNPLLTDGGLSTVI+KPN              RWQNRGSNPDR+LI AFK+IA MSDRL 
Sbjct: 63  SNPLLTDGGLSTVIAKPNGGGGGEFLSSSLG-RWQNRGSNPDRALIQAFKTIATMSDRLG 121

Query: 410 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 589
           LVATIKDRANEIYK+VEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 122 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 181


>ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
           gi|223525233|gb|EEF27913.1| transcription initiation
           factor iib, putative [Ricinus communis]
          Length = 312

 Score =  303 bits (776), Expect = 1e-80
 Identities = 149/180 (82%), Positives = 158/180 (87%)
 Frame = +2

Query: 50  DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 229
           D+YC+DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3   DAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 230 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMSDRLN 409
           +NPLL DGGLSTVI+KPN              RWQNRGSNPDR LI+AFK+IA MSDRL 
Sbjct: 63  TNPLLADGGLSTVIAKPNGASGEFLSSSLG--RWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 410 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 589
           LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180