BLASTX nr result
ID: Coptis24_contig00011358
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00011358 (591 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003519077.1| PREDICTED: transcription initiation factor I... 311 5e-83 ref|XP_002269045.1| PREDICTED: transcription initiation factor I... 310 1e-82 ref|XP_002284342.1| PREDICTED: transcription initiation factor I... 310 1e-82 ref|NP_001238343.1| transcription initiation factor IIB [Glycine... 306 1e-81 ref|XP_002534470.1| transcription initiation factor iib, putativ... 303 1e-80 >ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max] Length = 314 Score = 311 bits (797), Expect = 5e-83 Identities = 150/180 (83%), Positives = 161/180 (89%) Frame = +2 Query: 50 DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 229 D++C+DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDPNRVGGP Sbjct: 3 DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGP 62 Query: 230 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMSDRLN 409 SNPLLTDGGLSTVI+KPN RWQNRGSNPDR+LI+AFK+IA MSDRL Sbjct: 63 SNPLLTDGGLSTVIAKPNGGGGGGEFLSSSLGRWQNRGSNPDRALIIAFKTIATMSDRLG 122 Query: 410 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 589 LVATIKDRANEIYK+VEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK Sbjct: 123 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 182 >ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera] gi|296088031|emb|CBI35314.3| unnamed protein product [Vitis vinifera] Length = 312 Score = 310 bits (794), Expect = 1e-82 Identities = 153/180 (85%), Positives = 160/180 (88%) Frame = +2 Query: 50 DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 229 D++CTDCKKNTEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP Sbjct: 3 DAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62 Query: 230 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMSDRLN 409 SNPLLTDGGLSTVI+KPN RWQNRGSNPDR LI+AFK+IA MSDRL Sbjct: 63 SNPLLTDGGLSTVIAKPNGVSGDFLSSSLG--RWQNRGSNPDRGLILAFKTIATMSDRLG 120 Query: 410 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 589 LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK Sbjct: 121 LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180 >ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera] gi|297739630|emb|CBI29812.3| unnamed protein product [Vitis vinifera] Length = 312 Score = 310 bits (794), Expect = 1e-82 Identities = 153/180 (85%), Positives = 160/180 (88%) Frame = +2 Query: 50 DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 229 D++CTDCKKNTEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP Sbjct: 3 DAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62 Query: 230 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMSDRLN 409 SNPLLTDGGLSTVI+KPN RWQNRGSNPDR LI+AFK+IA MSDRL Sbjct: 63 SNPLLTDGGLSTVIAKPNGVSGDFLSSSLG--RWQNRGSNPDRGLILAFKTIATMSDRLG 120 Query: 410 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 589 LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK Sbjct: 121 LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180 >ref|NP_001238343.1| transcription initiation factor IIB [Glycine max] gi|1351222|sp|P48513.1|TF2B_SOYBN RecName: Full=Transcription initiation factor IIB; AltName: Full=General transcription factor TFIIB gi|945087|gb|AAB09756.1| transcription factor TFIIB [Glycine max] Length = 313 Score = 306 bits (785), Expect = 1e-81 Identities = 150/180 (83%), Positives = 160/180 (88%) Frame = +2 Query: 50 DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 229 D++C+DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDPNRVGGP Sbjct: 3 DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGP 62 Query: 230 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMSDRLN 409 SNPLLTDGGLSTVI+KPN RWQNRGSNPDR+LI AFK+IA MSDRL Sbjct: 63 SNPLLTDGGLSTVIAKPNGGGGGEFLSSSLG-RWQNRGSNPDRALIQAFKTIATMSDRLG 121 Query: 410 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 589 LVATIKDRANEIYK+VEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK Sbjct: 122 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 181 >ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis] gi|223525233|gb|EEF27913.1| transcription initiation factor iib, putative [Ricinus communis] Length = 312 Score = 303 bits (776), Expect = 1e-80 Identities = 149/180 (82%), Positives = 158/180 (87%) Frame = +2 Query: 50 DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 229 D+YC+DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP Sbjct: 3 DAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62 Query: 230 SNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMSDRLN 409 +NPLL DGGLSTVI+KPN RWQNRGSNPDR LI+AFK+IA MSDRL Sbjct: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLG--RWQNRGSNPDRGLILAFKTIATMSDRLG 120 Query: 410 LVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATK 589 LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180