BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011353
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japo...    86   4e-15
gb|ABA94593.2| retrotransposon protein, putative, unclassified [...    86   4e-15
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    79   3e-13
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...    79   3e-13
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    79   4e-13

>gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japonica Group]
          Length = 1102

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 44/112 (39%), Positives = 61/112 (54%)
 Frame = -2

Query: 338 SDICFLAETRVDASTSLQRFSSLGFQHSANFPANGHSGGLWLGWKTNIVLEIIYSCERYI 159
           S I FL+ETR  A    +  + LG +  A   ++G SGGL L W  ++ +EI   CERYI
Sbjct: 462 SQIVFLSETRQKADRIRRLRNRLGLRGFAGVDSDGMSGGLALYWHESVNVEIKALCERYI 521

Query: 158 AAIVKNNPVDTEWLCTFTYGHPKKSQRPDLWKSFVDLATNHNSPWLIVGDLN 3
            A V+ +P    W  TF YG P+   R ++W     L  + N PWL++GD N
Sbjct: 522 DAYVRLSPDGPLWHATFVYGEPRVENRHNMWSMLRSLRNSSNLPWLVIGDFN 573


>gb|ABA94593.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1469

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 44/112 (39%), Positives = 61/112 (54%)
 Frame = -2

Query: 338 SDICFLAETRVDASTSLQRFSSLGFQHSANFPANGHSGGLWLGWKTNIVLEIIYSCERYI 159
           S I FL+ETR  A    +  + LG +  A   ++G SGGL L W  ++ +EI   CERYI
Sbjct: 455 SQIVFLSETRQKADRIRRLRNRLGLRGFAGVDSDGMSGGLALYWHESVNVEIKALCERYI 514

Query: 158 AAIVKNNPVDTEWLCTFTYGHPKKSQRPDLWKSFVDLATNHNSPWLIVGDLN 3
            A V+ +P    W  TF YG P+   R ++W     L  + N PWL++GD N
Sbjct: 515 DAYVRLSPDGPLWHATFVYGEPRVENRHNMWSMLRSLRNSSNLPWLVIGDFN 566


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
           42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 41/113 (36%), Positives = 60/113 (53%)
 Frame = -2

Query: 341 KSDICFLAETRVDASTSLQRFSSLGFQHSANFPANGHSGGLWLGWKTNIVLEIIYSCERY 162
           K D+ FL ET           S LGF +    P  GHSGGL L WK ++ L  +Y  +R+
Sbjct: 409 KFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLALLWKDSVRLSNLYQDDRH 468

Query: 161 IAAIVKNNPVDTEWLCTFTYGHPKKSQRPDLWKSFVDLATNHNSPWLIVGDLN 3
           I   +  N ++  +  +  YGHP +S+R  LW  F +L+   N PW+++GD N
Sbjct: 469 IDVHISINNIN--FYLSRVYGHPCQSERHSLWTHFENLSKTRNDPWILIGDFN 519


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
           putative protein [Arabidopsis thaliana]
          Length = 1294

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 41/113 (36%), Positives = 60/113 (53%)
 Frame = -2

Query: 341 KSDICFLAETRVDASTSLQRFSSLGFQHSANFPANGHSGGLWLGWKTNIVLEIIYSCERY 162
           K D+ FL ET           S LGF +    P  GHSGGL L WK ++ L  +Y  +R+
Sbjct: 389 KFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLALLWKDSVRLSNLYQDDRH 448

Query: 161 IAAIVKNNPVDTEWLCTFTYGHPKKSQRPDLWKSFVDLATNHNSPWLIVGDLN 3
           I   +  N ++  +  +  YGHP +S+R  LW  F +L+   N PW+++GD N
Sbjct: 449 IDVHISINNIN--FYLSRVYGHPCQSERHSLWTHFENLSKTRNDPWILIGDFN 499


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1750

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 43/111 (38%), Positives = 59/111 (53%)
 Frame = -2

Query: 335 DICFLAETRVDASTSLQRFSSLGFQHSANFPANGHSGGLWLGWKTNIVLEIIYSCERYIA 156
           DI FL ET        +    LGF +    P NG SGGL L WK N+ L +I   ER I 
Sbjct: 411 DILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLID 470

Query: 155 AIVKNNPVDTEWLCTFTYGHPKKSQRPDLWKSFVDLATNHNSPWLIVGDLN 3
           + V  N  +  +  +  YGHP +S+R  LW++   ++ N N+ WL+VGD N
Sbjct: 471 SHVTFN--NKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFN 519