BLASTX nr result
ID: Coptis24_contig00011348
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00011348
(1737 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containi... 681 0.0
emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera] 680 0.0
ref|XP_002519315.1| pentatricopeptide repeat-containing protein,... 670 0.0
ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containi... 659 0.0
ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|2... 657 0.0
>ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic [Vitis vinifera]
Length = 498
Score = 681 bits (1756), Expect = 0.0
Identities = 335/438 (76%), Positives = 372/438 (84%), Gaps = 1/438 (0%)
Frame = +3
Query: 3 PGTNRRGPSLGGDKKRHWKQGEFPGKLSRS-PRRGPXXXXXXXXXXXXXXXXWVNTVTEA 179
P ++ ++G KKR WKQGEFPG + R+ P W NTV EA
Sbjct: 57 PSSSSSSSAVG--KKRLWKQGEFPGTSAEGRSRKTPIKNIKKKLDRKNDAKAWANTVAEA 114
Query: 180 LSDRILKKQWQDALQVFQMLKEQPFYSAKQGTYMKLLVLLGKCRQPYRARKLFDEMLEEC 359
LSD +LKKQW AL+VF+ML+EQPFY K+GTYMKLLVLLGK QP RA +LFD M+EE
Sbjct: 115 LSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEG 174
Query: 360 CEPTSELYTALLASYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELV 539
CEPT+ELYTALLASYCR+NL+DEAF++L++MKTLP+CQPDVFTYSTL+K CVD RFELV
Sbjct: 175 CEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELV 234
Query: 540 DSLYEEMAERLITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILS 719
+SLYEEM R ITPNTVTQNIVL+GYGKAGKFD+MEKVLSGMLEST KPDVWTMNTILS
Sbjct: 235 ESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILS 294
Query: 720 LFGNKGQIEIMEKWYEKFRSFGIEPETRTFNILIGAYGKKHLYDKMSSVMEYMRKLSFPW 899
LFGNKGQIEIMEKWYEKFR+FGIEPETRTFNILIGAYGKK +YDKMSSVMEYMRKL FPW
Sbjct: 295 LFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW 354
Query: 900 TTSTYNNVIEAFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGIFHKVVSSV 1079
TTSTYNNVIEAF+DVGDAKNMEYTFDQMR+E M+ DTKT CCLIRGY NAG+FHKVVSSV
Sbjct: 355 TTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSV 414
Query: 1080 QLAEKLEIPENTSFYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKE 1259
QLA K EIPENTSFYNAV+SACAKAEDLIEMERVF RMKDK C PDSTT+SIM+EAY+KE
Sbjct: 415 QLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKE 474
Query: 1260 GMNDKIYDLEQENLNVIA 1313
GMNDKIYDLEQE ++A
Sbjct: 475 GMNDKIYDLEQERQRMVA 492
>emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
Length = 525
Score = 680 bits (1754), Expect = 0.0
Identities = 335/439 (76%), Positives = 372/439 (84%), Gaps = 1/439 (0%)
Frame = +3
Query: 3 PGTNRRGPSLGGDKKRHWKQGEFPGKLSRS-PRRGPXXXXXXXXXXXXXXXXWVNTVTEA 179
P ++ ++G KKR WKQGEFPG + R+ P W NTV EA
Sbjct: 57 PSSSSSSSAVG--KKRLWKQGEFPGTSAEGRSRKTPIKNIKKKLDRKNDAKAWANTVAEA 114
Query: 180 LSDRILKKQWQDALQVFQMLKEQPFYSAKQGTYMKLLVLLGKCRQPYRARKLFDEMLEEC 359
LSD +LKKQW AL+VF+ML+EQPFY K+GTYMKLLVLLGK QP RA +LFD M+EE
Sbjct: 115 LSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEG 174
Query: 360 CEPTSELYTALLASYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELV 539
CEPT+ELYTALLASYCR+NL+DEAF++L++MKTLP+CQPDVFTYSTL+K CVD RFELV
Sbjct: 175 CEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELV 234
Query: 540 DSLYEEMAERLITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILS 719
+SLYEEM R ITPNTVTQNIVL+GYGKAGKFD+MEKVLSGMLEST KPDVWTMNTILS
Sbjct: 235 ESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILS 294
Query: 720 LFGNKGQIEIMEKWYEKFRSFGIEPETRTFNILIGAYGKKHLYDKMSSVMEYMRKLSFPW 899
LFGNKGQIEIMEKWYEKFR+FGIEPETRTFNILIGAYGKK +YDKMSSVMEYMRKL FPW
Sbjct: 295 LFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW 354
Query: 900 TTSTYNNVIEAFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGIFHKVVSSV 1079
TTSTYNNVIEAF+DVGDAKNMEYTFDQMR+E M+ DTKT CCLIRGY NAG+FHKVVSSV
Sbjct: 355 TTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSV 414
Query: 1080 QLAEKLEIPENTSFYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKE 1259
QLA K EIPENTSFYNAV+SACAKAEDLIEMERVF RMKDK C PDSTT+SIM+EAY+KE
Sbjct: 415 QLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKE 474
Query: 1260 GMNDKIYDLEQENLNVIAS 1316
GMNDKIYDLEQE ++ S
Sbjct: 475 GMNDKIYDLEQERQRMMCS 493
>ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223541630|gb|EEF43179.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 491
Score = 670 bits (1729), Expect = 0.0
Identities = 323/431 (74%), Positives = 367/431 (85%), Gaps = 1/431 (0%)
Frame = +3
Query: 24 PSLGGDKKRHWKQGEFPGKLSRSP-RRGPXXXXXXXXXXXXXXXXWVNTVTEALSDRILK 200
P+ KK+HWKQGEFPG SP RR P WVNTVTEALSDRILK
Sbjct: 48 PTSTSPKKKHWKQGEFPGFTETSPPRRTPIKNIKKKLDRKNKAKAWVNTVTEALSDRILK 107
Query: 201 KQWQDALQVFQMLKEQPFYSAKQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSEL 380
KQW AL+VF+MLKEQPFY K+GTYMKLLVLLG+ QP RA +LFDEM+EE EPT+EL
Sbjct: 108 KQWFQALEVFEMLKEQPFYHPKEGTYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEPTAEL 167
Query: 381 YTALLASYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYEEM 560
YTALLA+YCRN+L DEAF++L +MKTLP+C PDV+TYSTL+K CVD RFELV++LY+EM
Sbjct: 168 YTALLAAYCRNHLTDEAFSILQQMKTLPRCLPDVYTYSTLLKACVDASRFELVEALYQEM 227
Query: 561 AERLITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQ 740
ERLITPNTVTQNIVL+GYGKAG +DQME+VLSGMLESTECKPDVWTMN ILS+FGNKGQ
Sbjct: 228 GERLITPNTVTQNIVLSGYGKAGMYDQMERVLSGMLESTECKPDVWTMNIILSVFGNKGQ 287
Query: 741 IEIMEKWYEKFRSFGIEPETRTFNILIGAYGKKHLYDKMSSVMEYMRKLSFPWTTSTYNN 920
I++MEKWYEKFRSFGIEPETRTFNILIGAYGKK +YDKMSSVME+MRKL FPWTTSTYNN
Sbjct: 288 IDLMEKWYEKFRSFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFMRKLQFPWTTSTYNN 347
Query: 921 VIEAFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGIFHKVVSSVQLAEKLE 1100
VIEAFA GD K+MEYTFDQMR+E M+ DTKT CCLI GY NAG+FHKV+SSVQLA K E
Sbjct: 348 VIEAFAVAGDVKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVQLATKFE 407
Query: 1101 IPENTSFYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIY 1280
IPENT+FYNA++SACAKAEDL+EMERVFKRMKD C PDSTT+SIM+EAY++EGMNDK+Y
Sbjct: 408 IPENTTFYNAIISACAKAEDLMEMERVFKRMKDNQCQPDSTTYSIMVEAYKREGMNDKVY 467
Query: 1281 DLEQENLNVIA 1313
LEQE ++A
Sbjct: 468 YLEQEKQGMVA 478
>ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
gi|449522692|ref|XP_004168360.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
Length = 496
Score = 659 bits (1700), Expect = 0.0
Identities = 319/431 (74%), Positives = 364/431 (84%), Gaps = 1/431 (0%)
Frame = +3
Query: 42 KKRHWKQGEFPGKLSRSPRR-GPXXXXXXXXXXXXXXXXWVNTVTEALSDRILKKQWQDA 218
KKRHWKQGEFPG S RR P W NTVTEALSD I K+W A
Sbjct: 66 KKRHWKQGEFPGTTETSTRRRAPLKRVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQA 125
Query: 219 LQVFQMLKEQPFYSAKQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSELYTALLA 398
L+VF+ML+EQPFY K+GTYMKLLVLLG+ QP+RAR LFD M++E CEPT ELYTALLA
Sbjct: 126 LEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALLA 185
Query: 399 SYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYEEMAERLIT 578
+YCRNNL+D+AF+ L+ MKTLP+CQPDV+TYS LIK CVD+ RFE+V+SLYEEMAERLIT
Sbjct: 186 AYCRNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLIT 245
Query: 579 PNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQIEIMEK 758
PNTVTQNIVL+GYGK GK+DQMEKVL GMLEST C+PDVWTMN ILS+FGNKG IE+ME+
Sbjct: 246 PNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMMER 305
Query: 759 WYEKFRSFGIEPETRTFNILIGAYGKKHLYDKMSSVMEYMRKLSFPWTTSTYNNVIEAFA 938
WYEKFR+FGIEPETRTFNILIGAYGKK +YDKMSSVMEYMRKL FPWTTSTYNNVIEAFA
Sbjct: 306 WYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFA 365
Query: 939 DVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGIFHKVVSSVQLAEKLEIPENTS 1118
DVGDAKNMEYTF+QMR+E MR DTKT CCLI GY NAG+FHKV+ SV+LA KLEIPENTS
Sbjct: 366 DVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTS 425
Query: 1119 FYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIYDLEQEN 1298
FYNAV+SACAKAEDL+EM+RVFKRMKDK C PD+ T+SIM+EAY KEGMND+++ LE E
Sbjct: 426 FYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLELEK 485
Query: 1299 LNVIASSLDSE 1331
VI ++ ++E
Sbjct: 486 KQVIDNASNNE 496
>ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|222865115|gb|EEF02246.1|
predicted protein [Populus trichocarpa]
Length = 434
Score = 657 bits (1696), Expect = 0.0
Identities = 314/430 (73%), Positives = 363/430 (84%), Gaps = 1/430 (0%)
Frame = +3
Query: 24 PSLGGDKKRHWKQGEFPGKLSRS-PRRGPXXXXXXXXXXXXXXXXWVNTVTEALSDRILK 200
PS KK+HWKQGEFPG S PRR WVNTV EAL+D +LK
Sbjct: 5 PSSTFPKKKHWKQGEFPGFTDASRPRRTAIKNIKKKLDRKSKAKAWVNTVAEALTDCVLK 64
Query: 201 KQWQDALQVFQMLKEQPFYSAKQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSEL 380
KQW A+QVF+MLKEQPFY K+ TYMKLLVLLG+C QP RA +LFDEM+EE EPT+EL
Sbjct: 65 KQWLQAIQVFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTEL 124
Query: 381 YTALLASYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYEEM 560
YTALLA+YCRNNL+DE F+++++MK+LP+CQPDV+TYSTL+K CVD RFEL+D+LY+EM
Sbjct: 125 YTALLAAYCRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTLYQEM 184
Query: 561 AERLITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQ 740
ERLI+PNTVTQN+VL+GYG+ G +DQME+VLS MLES CKPDVWTMN ILS+FGN+GQ
Sbjct: 185 DERLISPNTVTQNVVLSGYGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVFGNEGQ 244
Query: 741 IEIMEKWYEKFRSFGIEPETRTFNILIGAYGKKHLYDKMSSVMEYMRKLSFPWTTSTYNN 920
I++ME+WYEKFR+FGIEPETRTFNILIGAYGKK +YDKMSSVMEYMRK+ FPWTTSTYNN
Sbjct: 245 IDLMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTSTYNN 304
Query: 921 VIEAFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGIFHKVVSSVQLAEKLE 1100
VIEAFADVGDAKNMEY FDQMR+E M+ DTKT CCLI GY NAG+FHKV+SSVQLA K E
Sbjct: 305 VIEAFADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFE 364
Query: 1101 IPENTSFYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIY 1280
IPENTSF+NAV+SACAKA+DL+EMERVFKRMKDK C PDS T+SIM+EAYRKEGMNDKIY
Sbjct: 365 IPENTSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEAYRKEGMNDKIY 424
Query: 1281 DLEQENLNVI 1310
LEQE +I
Sbjct: 425 YLEQEKQEMI 434