BLASTX nr result
ID: Coptis24_contig00011341
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00011341
(827 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267920.1| PREDICTED: cysteine desulfurase 2, chloropla... 190 3e-52
ref|XP_003546241.1| PREDICTED: cysteine desulfurase 2, chloropla... 189 7e-52
gb|AAF22900.1|AC006932_17 T27G7.17 [Arabidopsis thaliana] 190 6e-51
ref|NP_172325.2| cysteine desulfurase 2 [Arabidopsis thaliana] g... 190 6e-51
ref|XP_002892460.1| hypothetical protein ARALYDRAFT_470910 [Arab... 189 1e-50
>ref|XP_002267920.1| PREDICTED: cysteine desulfurase 2, chloroplastic [Vitis vinifera]
gi|296083920|emb|CBI24308.3| unnamed protein product
[Vitis vinifera]
Length = 463
Score = 190 bits (483), Expect(2) = 3e-52
Identities = 93/143 (65%), Positives = 110/143 (76%)
Frame = +2
Query: 398 KAYCCLDSLQNYYSTYNSNVHRGIHFLSARAADEYDSARIKVSHFINASESTEIVFSRNA 577
K L +LQNYY YNSNVHRGIHFLSA+A DEY+SAR KV+ FINASE EI+F+RNA
Sbjct: 84 KPTAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYESARRKVAAFINASEPGEIIFTRNA 143
Query: 578 TEAMNLVAYSWDLLNLRPGDEIILTIAEHHSVIVPFQIVVQKTGATLKFVSLTEEEVPDI 757
TEA+NLVAYSW L NL+P DEI+LT+AEHHS IVP+Q+V QKTGA LKFV+LTE+EVPD+
Sbjct: 144 TEAINLVAYSWGLSNLKPEDEIVLTVAEHHSAIVPWQLVAQKTGAILKFVNLTEDEVPDV 203
Query: 758 DXXXXXXXXXXXXVVTHHFSNTL 826
+ +V HH SN L
Sbjct: 204 EKLKEMISRKTKLLVVHHISNVL 226
Score = 41.6 bits (96), Expect(2) = 3e-52
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 345 KNVNKSKLVYLDNAATSQKPTAV 413
+ VN SKLVYLDNAATSQKPTAV
Sbjct: 66 QEVNGSKLVYLDNAATSQKPTAV 88
>ref|XP_003546241.1| PREDICTED: cysteine desulfurase 2, chloroplastic-like [Glycine max]
Length = 468
Score = 189 bits (480), Expect(2) = 7e-52
Identities = 94/143 (65%), Positives = 108/143 (75%)
Frame = +2
Query: 398 KAYCCLDSLQNYYSTYNSNVHRGIHFLSARAADEYDSARIKVSHFINASESTEIVFSRNA 577
K L +LQNYY YNSNVHRGIHFLSARA DEY+SAR KV+ FINA +S EIVF++NA
Sbjct: 89 KPTAVLKALQNYYEAYNSNVHRGIHFLSARATDEYESARRKVASFINAIDSREIVFTKNA 148
Query: 578 TEAMNLVAYSWDLLNLRPGDEIILTIAEHHSVIVPFQIVVQKTGATLKFVSLTEEEVPDI 757
+EA+NLVAYSW L NL+P DEIILT+AEHHS IVP+QIV QKTGA LKFV L ++E+PDI
Sbjct: 149 SEAINLVAYSWGLSNLKPDDEIILTVAEHHSAIVPWQIVAQKTGAVLKFVDLNQDEIPDI 208
Query: 758 DXXXXXXXXXXXXVVTHHFSNTL 826
D VV HH SN L
Sbjct: 209 DKLKEMLSRKTKIVVVHHVSNVL 231
Score = 41.6 bits (96), Expect(2) = 7e-52
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 345 KNVNKSKLVYLDNAATSQKPTAV 413
+ VN SKLVYLDNAATSQKPTAV
Sbjct: 71 QEVNGSKLVYLDNAATSQKPTAV 93
>gb|AAF22900.1|AC006932_17 T27G7.17 [Arabidopsis thaliana]
Length = 526
Score = 190 bits (482), Expect(2) = 6e-51
Identities = 94/143 (65%), Positives = 110/143 (76%)
Frame = +2
Query: 398 KAYCCLDSLQNYYSTYNSNVHRGIHFLSARAADEYDSARIKVSHFINASESTEIVFSRNA 577
K LD+LQNYY YNSNVHRGIH+LSA+A DE++ AR KV+ FINAS+S EIVF+RNA
Sbjct: 84 KPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFELARKKVARFINASDSREIVFTRNA 143
Query: 578 TEAMNLVAYSWDLLNLRPGDEIILTIAEHHSVIVPFQIVVQKTGATLKFVSLTEEEVPDI 757
TEA+NLVAYSW L NL+PGDE+ILT+AEHHS IVP+QIV QKTGA LKFV+L E+EVPDI
Sbjct: 144 TEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPWQIVSQKTGAVLKFVTLNEDEVPDI 203
Query: 758 DXXXXXXXXXXXXVVTHHFSNTL 826
+ V HH SN L
Sbjct: 204 NKLRELISPKTKLVAVHHVSNVL 226
Score = 37.7 bits (86), Expect(2) = 6e-51
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3
Query: 345 KNVNKSKLVYLDNAATSQKPTAV 413
+ VN SKLVYLD+AATSQKP AV
Sbjct: 66 QEVNGSKLVYLDSAATSQKPAAV 88
>ref|NP_172325.2| cysteine desulfurase 2 [Arabidopsis thaliana]
gi|75249321|sp|Q93WX6.1|NFS2_ARATH RecName:
Full=Cysteine desulfurase 2, chloroplastic; AltName:
Full=NIFS-like protein; AltName: Full=Plastid sufS-like
protein; AltName: Full=Protein AtCpNifS; AltName:
Full=Selenocysteine lyase; Flags: Precursor
gi|16152176|gb|AAL14994.1|AF419347_1 NIFS-like protein
CpNifsp precursor [Arabidopsis thaliana]
gi|20453112|gb|AAM19798.1| At1g08490/T27G7_14
[Arabidopsis thaliana] gi|23506185|gb|AAN31104.1|
At1g08490/T27G7_14 [Arabidopsis thaliana]
gi|27085243|gb|AAL79956.1| cysteine desulfurase
[Arabidopsis thaliana] gi|332190177|gb|AEE28298.1|
cysteine desulfurase 2 [Arabidopsis thaliana]
Length = 463
Score = 190 bits (482), Expect(2) = 6e-51
Identities = 94/143 (65%), Positives = 110/143 (76%)
Frame = +2
Query: 398 KAYCCLDSLQNYYSTYNSNVHRGIHFLSARAADEYDSARIKVSHFINASESTEIVFSRNA 577
K LD+LQNYY YNSNVHRGIH+LSA+A DE++ AR KV+ FINAS+S EIVF+RNA
Sbjct: 84 KPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFELARKKVARFINASDSREIVFTRNA 143
Query: 578 TEAMNLVAYSWDLLNLRPGDEIILTIAEHHSVIVPFQIVVQKTGATLKFVSLTEEEVPDI 757
TEA+NLVAYSW L NL+PGDE+ILT+AEHHS IVP+QIV QKTGA LKFV+L E+EVPDI
Sbjct: 144 TEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPWQIVSQKTGAVLKFVTLNEDEVPDI 203
Query: 758 DXXXXXXXXXXXXVVTHHFSNTL 826
+ V HH SN L
Sbjct: 204 NKLRELISPKTKLVAVHHVSNVL 226
Score = 37.7 bits (86), Expect(2) = 6e-51
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3
Query: 345 KNVNKSKLVYLDNAATSQKPTAV 413
+ VN SKLVYLD+AATSQKP AV
Sbjct: 66 QEVNGSKLVYLDSAATSQKPAAV 88
>ref|XP_002892460.1| hypothetical protein ARALYDRAFT_470910 [Arabidopsis lyrata subsp.
lyrata] gi|297338302|gb|EFH68719.1| hypothetical protein
ARALYDRAFT_470910 [Arabidopsis lyrata subsp. lyrata]
Length = 466
Score = 189 bits (480), Expect(2) = 1e-50
Identities = 93/143 (65%), Positives = 110/143 (76%)
Frame = +2
Query: 398 KAYCCLDSLQNYYSTYNSNVHRGIHFLSARAADEYDSARIKVSHFINASESTEIVFSRNA 577
K LD+LQNYY YNSNVHRGIH+LSA+A DE++ AR KV+ FINAS+S EIVF+RNA
Sbjct: 87 KPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFELARKKVARFINASDSREIVFTRNA 146
Query: 578 TEAMNLVAYSWDLLNLRPGDEIILTIAEHHSVIVPFQIVVQKTGATLKFVSLTEEEVPDI 757
TEA+NLVAYSW L NL+PGDE+ILT+AEHHS IVP+QIV QKTGA LKFV+L ++EVPDI
Sbjct: 147 TEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPWQIVSQKTGAVLKFVTLNDDEVPDI 206
Query: 758 DXXXXXXXXXXXXVVTHHFSNTL 826
+ V HH SN L
Sbjct: 207 EKLREMISPKTKLVAVHHVSNVL 229
Score = 37.4 bits (85), Expect(2) = 1e-50
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3
Query: 351 VNKSKLVYLDNAATSQKPTAV 413
VN SKLVYLD+AATSQKP AV
Sbjct: 71 VNGSKLVYLDSAATSQKPAAV 91