BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011327
         (1509 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281960.1| PREDICTED: DNA-binding protein RHL1 isoform ...   313   6e-83
ref|XP_003620153.1| DNA-binding protein RHL1 [Medicago truncatul...   301   4e-79
ref|XP_003533290.1| PREDICTED: DNA-binding protein RHL1-like [Gl...   286   1e-74
emb|CBI40527.3| unnamed protein product [Vitis vinifera]              281   2e-73
ref|XP_002530059.1| conserved hypothetical protein [Ricinus comm...   280   9e-73

>ref|XP_002281960.1| PREDICTED: DNA-binding protein RHL1 isoform 1 [Vitis vinifera]
            gi|359489730|ref|XP_003633969.1| PREDICTED: DNA-binding
            protein RHL1 isoform 2 [Vitis vinifera]
          Length = 449

 Score =  313 bits (803), Expect = 6e-83
 Identities = 180/351 (51%), Positives = 221/351 (62%), Gaps = 7/351 (1%)
 Frame = +3

Query: 69   ERSRLKKLAFTRNILSQXXXXXXXXXXXXXXXVKHHGKDIVKKSQRKNRFLFSFPALLAP 248
            ER R KKLAF++N+LS                +KHHGKDI+KKSQRKNRFLFSFP LLAP
Sbjct: 22   ERKRRKKLAFSKNLLSDTPSKAFSALSPSKTVIKHHGKDILKKSQRKNRFLFSFPGLLAP 81

Query: 249  IKGGKIGELIDLGTKNPILYLDFPQGRVKLFGTILFSKNRYLTLQFSKGGKNVMCEDHFD 428
            I GGKIGEL DLGTKNPILYLDFPQG++KLFGTI++ KNRYLTL FS+GGKNVMCED+FD
Sbjct: 82   IAGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPKNRYLTLHFSRGGKNVMCEDYFD 141

Query: 429  NMVVFSDVWWIGTKDENPEEAQLEFPKNLIQGKHTDSDFQGGAGETCEPKPGVKTANKPR 608
            NM+VFSD WWIG K+ENPEEA+LEFPK L +G+  + DF+GGAG   + K GV   NKP 
Sbjct: 142  NMIVFSDAWWIGRKEENPEEARLEFPKELSEGQSVEYDFKGGAGMASDSKQGV---NKPE 198

Query: 609  KEYVETQTPSDDLEDVSDDSGPLNGI----NKDLMEVTTVRHSMRTAGKKIKFTEVSSGE 776
             +YVE Q+P  +LED       L  +     KD +EVT VRHS RTAGK   F E SSG+
Sbjct: 199  MKYVEPQSPKPELEDDLSGEDSLKDVVEMTPKD-VEVTPVRHSQRTAGKTFNFAEASSGD 257

Query: 777  DSA---GSISDTLXXXXXXXXXXXXXXTNAPSLVVHAGDSLKIATRTDLLGQNQESSFSA 947
            DS    G+ISD                 N+ S    +G+      RT    Q QES+ +A
Sbjct: 258  DSVENDGNISD--------------GQENSGSATPESGNE-DAEARTGATTQIQESAGAA 302

Query: 948  KSKEVSVSKHGLLVQATISSLFGKVKKKDESGKETKTAVKERQSGKESNTK 1100
                  +S      QATIS+LF KV+++  S    K++  +  + K  + K
Sbjct: 303  TKSRKRLS------QATISTLFKKVEEQKTSRTPRKSSSAKASAQKTDSRK 347


>ref|XP_003620153.1| DNA-binding protein RHL1 [Medicago truncatula]
            gi|355495168|gb|AES76371.1| DNA-binding protein RHL1
            [Medicago truncatula]
          Length = 435

 Score =  301 bits (770), Expect = 4e-79
 Identities = 177/365 (48%), Positives = 219/365 (60%), Gaps = 15/365 (4%)
 Frame = +3

Query: 69   ERSRLKKLAFTRNILSQXXXXXXXXXXXXXXXVKHHGKDIVKKSQRKN-RFLFSFPALLA 245
            ER RLK LAF+ N+LS+                KHHGKDI+KKSQRK+ R+LFSFP L A
Sbjct: 25   ERKRLKSLAFSNNVLSETKARSSIHLNPSSIVAKHHGKDIIKKSQRKSSRYLFSFPGLFA 84

Query: 246  PIKGGKIGELIDLGTKNPILYLDFPQGRVKLFGTILFSKNRYLTLQFSKGGKNVMCEDHF 425
            PI GGKIG+L DLGTKNPILYLDFPQGR+KLFGTIL+ KNRYLTLQFSKGGK+VMCED+F
Sbjct: 85   PIGGGKIGDLKDLGTKNPILYLDFPQGRMKLFGTILYPKNRYLTLQFSKGGKSVMCEDYF 144

Query: 426  DNMVVFSDVWWIGTKDENPEEAQLEFPKNLIQGKHTDSDFQG------GAGETCEPKPGV 587
            DNM+VFSD WWIGTKDENPEEA+LEFPK L +GK T+ DF+G      GAG       GV
Sbjct: 145  DNMIVFSDAWWIGTKDENPEEAKLEFPKELYEGKQTEHDFKGGAGAGAGAGAASVVNHGV 204

Query: 588  KTANKPRKEYVETQTPSDDLEDVSDDSGPLNGINKDLMEVTTVRHSMRTAGKKIKFTEVS 767
                  R E    +TP +  ED+SD    L    KD  E+  VR S RT  K  KF E+S
Sbjct: 205  SKTKIKRPEPESPETPLE--EDLSDSEIEL----KDTTELVPVRQSARTVKKSYKFAEIS 258

Query: 768  SGEDSAGSISDTLXXXXXXXXXXXXXXTNAPSLVVHAGDSLKIATRTDLLGQNQE----- 932
            SG+DS  S  D                 +  S ++    +  +   T ++  + E     
Sbjct: 259  SGDDSGKSSPDLSEHEEKAVEVDTDANDHTSSNILSVISASPVQKETAVIDIDDEDDAPK 318

Query: 933  SSFSAKSKE---VSVSKHGLLVQATISSLFGKVKKKDESGKETKTAVKERQSGKESNTKK 1103
                 ++KE   VS +K GLLVQATISSLF KV+ K ++    K +   + SG++S    
Sbjct: 319  DQLPVENKEPASVSKAKKGLLVQATISSLFKKVEVK-KAAANPKKSPSSKASGQKSQPAG 377

Query: 1104 KQSKV 1118
             + K+
Sbjct: 378  SKRKI 382


>ref|XP_003533290.1| PREDICTED: DNA-binding protein RHL1-like [Glycine max]
          Length = 421

 Score =  286 bits (731), Expect = 1e-74
 Identities = 174/375 (46%), Positives = 220/375 (58%), Gaps = 29/375 (7%)
 Frame = +3

Query: 69   ERSRLKKLAFTRNILSQXXXXXXXXXXXXXXXVKHHGKDIVKKSQRKN-RFLFSFPALLA 245
            ER RLK LA +  ILS+                KHHGKDI+KKSQRK+ R+LFSFP L+A
Sbjct: 24   ERKRLKSLAISNKILSETPARSSVHLNPSSVVAKHHGKDIIKKSQRKSCRYLFSFPGLIA 83

Query: 246  PIKGGKIGELIDLGTKNPILYLDFPQGRVKLFGTILFSKNRYLTLQFSKGGKNVMCEDHF 425
            PI GGKIG+L DLGTKNP+LYLDFPQG++KLFGTI++ KNRYLTLQF KGGK+VMCED+F
Sbjct: 84   PIAGGKIGDLKDLGTKNPVLYLDFPQGQMKLFGTIVYPKNRYLTLQFPKGGKSVMCEDYF 143

Query: 426  DNMVVFSDVWWIGTKDENPEEAQLEFPKNLIQGKHTDSDFQGGAGETCEP--KPGVKTAN 599
            DNM+VFSD WWIG KDENPEE++LEFP  L +G   + DF+GGAG         GV   N
Sbjct: 144  DNMIVFSDAWWIGRKDENPEESKLEFPNELYEGHQAEYDFKGGAGAGAASVVNQGVPRTN 203

Query: 600  KPRKEYVETQTPSDDLEDVSDDSGPLNGIN-KDLMEVTTVRHSMRTAGKKIKFTEVSSGE 776
              R E    +TP++D  D+SD     N IN KD  E+  VRHS RTA K  KF E+SSG+
Sbjct: 204  IQRVEQESPKTPTED--DLSD-----NEINLKDTKELVPVRHSTRTAKKSYKFAEISSGD 256

Query: 777  DSAGSIS------------DTLXXXXXXXXXXXXXXTNAPSLVVHAGDS--------LKI 896
            DS  +              DT                   ++V    D          KI
Sbjct: 257  DSGENSPELSDDEEKVVEVDTAVNDHNSSNILIVSLIQKKTVVFDLDDEDDAPVDQPAKI 316

Query: 897  ATRTDLLGQNQESSFSAK---SKEVSVSKHGLLVQATISSLFGKVKKK--DESGKETKTA 1061
             T +    +++E S SA    S EV  S  G LVQATIS+LF KV++K    S +++ ++
Sbjct: 317  NTESASRSKSKEVSQSASASASTEVKSSNRGSLVQATISTLFKKVEEKTTPRSSRKSPSS 376

Query: 1062 VKERQSGKESNTKKK 1106
                Q  + + +K+K
Sbjct: 377  KAYGQKSQPAGSKRK 391


>emb|CBI40527.3| unnamed protein product [Vitis vinifera]
          Length = 369

 Score =  281 bits (720), Expect = 2e-73
 Identities = 167/347 (48%), Positives = 203/347 (58%), Gaps = 3/347 (0%)
 Frame = +3

Query: 69   ERSRLKKLAFTRNILSQXXXXXXXXXXXXXXXVKHHGKDIVKKSQRKNRFLFSFPALLAP 248
            ER R KKLAF++N+LS                +KHHGKDI+KKSQRKNRFLFSFP LLAP
Sbjct: 22   ERKRRKKLAFSKNLLSDTPSKAFSALSPSKTVIKHHGKDILKKSQRKNRFLFSFPGLLAP 81

Query: 249  IKGGKIGELIDLGTKNPILYLDFPQGRVKLFGTILFSKNRYLTLQFSKGGKNVMCEDHFD 428
            I GGKIGEL DLGTKNPILYLDFPQG++KLFGTI++ KNRYLTL FS+GGKNVMCED+FD
Sbjct: 82   IAGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPKNRYLTLHFSRGGKNVMCEDYFD 141

Query: 429  NMVVFSDVWWIGTKDENPEEAQLEFPKNLIQGKHTDSDFQGGAGETCEPKPGVKTANKPR 608
            NM+VFSD WWIG K+ENPEEA+LEFPK L +G+  + DF+GGAG                
Sbjct: 142  NMIVFSDAWWIGRKEENPEEARLEFPKELSEGQSVEYDFKGGAG---------------- 185

Query: 609  KEYVETQTPSDDLEDVSDDSGPLNGINKDLMEVTTVRHSMRTAGKKIKFTEVSSGEDSA- 785
                     SD  +DV               EVT VRHS RTAGK   F E SSG+DS  
Sbjct: 186  -------MASDSKQDV---------------EVTPVRHSQRTAGKTFNFAEASSGDDSVE 223

Query: 786  --GSISDTLXXXXXXXXXXXXXXTNAPSLVVHAGDSLKIATRTDLLGQNQESSFSAKSKE 959
              G+ISD                 N+ S    +G+      RT    Q QES+ +A    
Sbjct: 224  NDGNISD--------------GQENSGSATPESGNE-DAEARTGATTQIQESAGAATKSR 268

Query: 960  VSVSKHGLLVQATISSLFGKVKKKDESGKETKTAVKERQSGKESNTK 1100
              +S      QATIS+LF KV+++  S    K++  +  + K  + K
Sbjct: 269  KRLS------QATISTLFKKVEEQKTSRTPRKSSSAKASAQKTDSRK 309


>ref|XP_002530059.1| conserved hypothetical protein [Ricinus communis]
            gi|223530436|gb|EEF32321.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 448

 Score =  280 bits (715), Expect = 9e-73
 Identities = 164/365 (44%), Positives = 216/365 (59%), Gaps = 21/365 (5%)
 Frame = +3

Query: 69   ERSRLKKLAFTRNILSQXXXXXXXXXXXXXXXVKHHGKDIVKKSQRKNRFLFSFPALLAP 248
            ER RLKKL+F+ +ILS                +KHHGKDI +K QRKNRFLFSFP LLAP
Sbjct: 21   ERKRLKKLSFSNHILSDTPIDAQSPLPPSKTVLKHHGKDITRKCQRKNRFLFSFPGLLAP 80

Query: 249  I-KGGKIGELIDLGTKNPILYLDFPQGRVKLFGTILFSKNRYLTLQFSKGGKNVMCEDHF 425
            I  GGKIG+L +LGTKNPILYL FPQG++KLFGTI++ KNRYL+LQFS+GGKNVMCED+F
Sbjct: 81   IASGGKIGDLKNLGTKNPILYLHFPQGQLKLFGTIVYPKNRYLSLQFSRGGKNVMCEDYF 140

Query: 426  DNMVVFSDVWWIGTKDENPEEAQLEFPKNLIQGKHTDSDFQGGAGETCEPKPGVKTANKP 605
            D M+VFS+ WWIGTK+ENPEEA+L+FPK  ++G+  + DF+GGAG         + A++ 
Sbjct: 141  DTMIVFSEAWWIGTKEENPEEARLDFPKQFLEGREVEYDFKGGAG-AASALINKQVAHRS 199

Query: 606  RKEYVETQTPSDDLE-DVSDDSGPLNGINKDLMEVTTVRHSMRTAGKKIKFTEVSSGEDS 782
              +YVE ++P  +LE D+ D+   L    KDL E T VRHS RT GK  KF +VSS ED+
Sbjct: 200  GMKYVEEESPDTELENDLLDEKSNL----KDLKETTPVRHSERTTGKTFKFADVSSEEDA 255

Query: 783  AGSISDTL--------XXXXXXXXXXXXXXTNAPSLVVHAGDSLK-----------IATR 905
              S+   +                         P L     D+ +             + 
Sbjct: 256  VESVPADIDVKEEGEEEKKAGKELEFKWSMLGLPFLDFDDEDATQGNHFSSQNHASAMSE 315

Query: 906  TDLLGQNQESSFSAKSKEVSVSKHGLLVQATISSLFGKVKKKDESGKETKTAVKERQSGK 1085
            T+    ++ +  +  SKE   S  G LVQATIS+LF K   K    K+ +  ++ R S K
Sbjct: 316  TNSRKLSESAVIATTSKEDLHSNRGSLVQATISTLFNKAHGK----KKVEEKIEPRNSRK 371

Query: 1086 ESNTK 1100
              ++K
Sbjct: 372  YQSSK 376