BLASTX nr result
ID: Coptis24_contig00011325
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00011325 (1003 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002519389.1| pentatricopeptide repeat-containing protein,... 89 2e-15 ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containi... 88 4e-15 emb|CBI39176.3| unnamed protein product [Vitis vinifera] 87 5e-15 ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [S... 82 2e-13 ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group] g... 82 3e-13 >ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 634 Score = 88.6 bits (218), Expect = 2e-15 Identities = 39/75 (52%), Positives = 59/75 (78%) Frame = +2 Query: 5 RDMYYSMIKSLSLACEVEKAFELYGDMVKQGYVPELSVFFDLIGALIKTNKWDEALGLAD 184 ++ Y S+I+SL+LAC+V+KAF+LY DM ++G+VPELS+ LI L++ KW+EAL L+D Sbjct: 556 QNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSD 615 Query: 185 SICHMEIYWHPGEKS 229 SIC M+I+W E++ Sbjct: 616 SICQMDIHWVQQEQT 630 >ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial-like [Vitis vinifera] Length = 1045 Score = 87.8 bits (216), Expect = 4e-15 Identities = 39/67 (58%), Positives = 55/67 (82%) Frame = +2 Query: 5 RDMYYSMIKSLSLACEVEKAFELYGDMVKQGYVPELSVFFDLIGALIKTNKWDEALGLAD 184 +D+Y S+I+SLSLA +V+KAFELY DM+K+G +PELS+FF L+ LI+ N+W+EAL L+D Sbjct: 916 KDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSD 975 Query: 185 SICHMEI 205 IC M + Sbjct: 976 CICQMMV 982 >emb|CBI39176.3| unnamed protein product [Vitis vinifera] Length = 996 Score = 87.4 bits (215), Expect = 5e-15 Identities = 39/65 (60%), Positives = 54/65 (83%) Frame = +2 Query: 5 RDMYYSMIKSLSLACEVEKAFELYGDMVKQGYVPELSVFFDLIGALIKTNKWDEALGLAD 184 +D+Y S+I+SLSLA +V+KAFELY DM+K+G +PELS+FF L+ LI+ N+W+EAL L+D Sbjct: 916 KDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSD 975 Query: 185 SICHM 199 IC M Sbjct: 976 CICQM 980 >ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor] gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor] Length = 802 Score = 82.4 bits (202), Expect = 2e-13 Identities = 40/70 (57%), Positives = 52/70 (74%) Frame = +2 Query: 2 SRDMYYSMIKSLSLACEVEKAFELYGDMVKQGYVPELSVFFDLIGALIKTNKWDEALGLA 181 S+DMY S+I++L LA ++EKAFELY ++ ++G VPELSVF LI LIK NKW+EAL L Sbjct: 724 SKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLC 783 Query: 182 DSICHMEIYW 211 SIC + W Sbjct: 784 YSICDEGVNW 793 >ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group] gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group] Length = 801 Score = 81.6 bits (200), Expect = 3e-13 Identities = 40/74 (54%), Positives = 52/74 (70%) Frame = +2 Query: 8 DMYYSMIKSLSLACEVEKAFELYGDMVKQGYVPELSVFFDLIGALIKTNKWDEALGLADS 187 DMY S+I++L LA +VE+AF LY +M ++G+VPELSVF LI L++ KWDEAL L Sbjct: 725 DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYG 784 Query: 188 ICHMEIYWHPGEKS 229 ICH + W G KS Sbjct: 785 ICHEGVNWQ-GNKS 797