BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011325
         (1003 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519389.1| pentatricopeptide repeat-containing protein,...    89   2e-15
ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containi...    88   4e-15
emb|CBI39176.3| unnamed protein product [Vitis vinifera]               87   5e-15
ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [S...    82   2e-13
ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group] g...    82   3e-13

>ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541456|gb|EEF43006.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score = 88.6 bits (218), Expect = 2e-15
 Identities = 39/75 (52%), Positives = 59/75 (78%)
 Frame = +2

Query: 5   RDMYYSMIKSLSLACEVEKAFELYGDMVKQGYVPELSVFFDLIGALIKTNKWDEALGLAD 184
           ++ Y S+I+SL+LAC+V+KAF+LY DM ++G+VPELS+   LI  L++  KW+EAL L+D
Sbjct: 556 QNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSD 615

Query: 185 SICHMEIYWHPGEKS 229
           SIC M+I+W   E++
Sbjct: 616 SICQMDIHWVQQEQT 630


>ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
            mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score = 87.8 bits (216), Expect = 4e-15
 Identities = 39/67 (58%), Positives = 55/67 (82%)
 Frame = +2

Query: 5    RDMYYSMIKSLSLACEVEKAFELYGDMVKQGYVPELSVFFDLIGALIKTNKWDEALGLAD 184
            +D+Y S+I+SLSLA +V+KAFELY DM+K+G +PELS+FF L+  LI+ N+W+EAL L+D
Sbjct: 916  KDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSD 975

Query: 185  SICHMEI 205
             IC M +
Sbjct: 976  CICQMMV 982


>emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score = 87.4 bits (215), Expect = 5e-15
 Identities = 39/65 (60%), Positives = 54/65 (83%)
 Frame = +2

Query: 5    RDMYYSMIKSLSLACEVEKAFELYGDMVKQGYVPELSVFFDLIGALIKTNKWDEALGLAD 184
            +D+Y S+I+SLSLA +V+KAFELY DM+K+G +PELS+FF L+  LI+ N+W+EAL L+D
Sbjct: 916  KDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSD 975

Query: 185  SICHM 199
             IC M
Sbjct: 976  CICQM 980


>ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
           gi|241937886|gb|EES11031.1| hypothetical protein
           SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 40/70 (57%), Positives = 52/70 (74%)
 Frame = +2

Query: 2   SRDMYYSMIKSLSLACEVEKAFELYGDMVKQGYVPELSVFFDLIGALIKTNKWDEALGLA 181
           S+DMY S+I++L LA ++EKAFELY ++ ++G VPELSVF  LI  LIK NKW+EAL L 
Sbjct: 724 SKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLC 783

Query: 182 DSICHMEIYW 211
            SIC   + W
Sbjct: 784 YSICDEGVNW 793


>ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
           gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa
           Japonica Group]
          Length = 801

 Score = 81.6 bits (200), Expect = 3e-13
 Identities = 40/74 (54%), Positives = 52/74 (70%)
 Frame = +2

Query: 8   DMYYSMIKSLSLACEVEKAFELYGDMVKQGYVPELSVFFDLIGALIKTNKWDEALGLADS 187
           DMY S+I++L LA +VE+AF LY +M ++G+VPELSVF  LI  L++  KWDEAL L   
Sbjct: 725 DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYG 784

Query: 188 ICHMEIYWHPGEKS 229
           ICH  + W  G KS
Sbjct: 785 ICHEGVNWQ-GNKS 797