BLASTX nr result
ID: Coptis24_contig00011283
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00011283 (329 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AEL99040.1| succinate dehydrogenase [ubiquinone] flavoprotein... 105 4e-21 gb|AEL99041.1| succinate dehydrogenase [ubiquinone] flavoprotein... 103 1e-20 ref|XP_003537582.1| PREDICTED: succinate dehydrogenase [ubiquino... 102 4e-20 gb|ADZ75464.1| succinate dehydrogenase [Litchi chinensis] 102 4e-20 ref|XP_002310225.1| predicted protein [Populus trichocarpa] gi|2... 101 6e-20 >gb|AEL99040.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, partial [Silene latifolia] Length = 262 Score = 105 bits (262), Expect = 4e-21 Identities = 54/92 (58%), Positives = 59/92 (64%) Frame = +2 Query: 53 MWRSVSRQITSSLRKKPFVSRFFSSGWNGGGYTIVDHTYDXXXXXXXXXXXXXXXXXSEH 232 MWR +R + +SRFFSS + GGYT+VDH YD SEH Sbjct: 1 MWRCAARTVRHRSSSTSPISRFFSSN-SSGGYTVVDHAYDAVVVGAGGAGLRAAIGLSEH 59 Query: 233 GFNTACITKLFPTRSHTVAAQGGINAALGNMT 328 GFNTACITKLFPTRSHTVAAQGGINAALGNMT Sbjct: 60 GFNTACITKLFPTRSHTVAAQGGINAALGNMT 91 >gb|AEL99041.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, partial [Silene latifolia] Length = 262 Score = 103 bits (257), Expect = 1e-20 Identities = 53/92 (57%), Positives = 59/92 (64%) Frame = +2 Query: 53 MWRSVSRQITSSLRKKPFVSRFFSSGWNGGGYTIVDHTYDXXXXXXXXXXXXXXXXXSEH 232 MWR +R + +SRFFSS + GGYT+VDH YD SEH Sbjct: 1 MWRCAARTVRHRSSSTSPISRFFSSN-SSGGYTVVDHAYDAVVVGAGGAGLRAAIGLSEH 59 Query: 233 GFNTACITKLFPTRSHTVAAQGGINAALGNMT 328 GF+TACITKLFPTRSHTVAAQGGINAALGNMT Sbjct: 60 GFDTACITKLFPTRSHTVAAQGGINAALGNMT 91 >ref|XP_003537582.1| PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like isoform 1 [Glycine max] Length = 630 Score = 102 bits (253), Expect = 4e-20 Identities = 57/100 (57%), Positives = 63/100 (63%), Gaps = 8/100 (8%) Frame = +2 Query: 53 MWRSVSRQI--------TSSLRKKPFVSRFFSSGWNGGGYTIVDHTYDXXXXXXXXXXXX 208 MWR ++R + TS+ +SRFFSSG N YT+VDHTYD Sbjct: 1 MWRCIARGLRGPASTRSTSNHSLGSQLSRFFSSGANSS-YTVVDHTYDAVVVGAGGAGLR 59 Query: 209 XXXXXSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT 328 SEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT Sbjct: 60 AAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT 99 >gb|ADZ75464.1| succinate dehydrogenase [Litchi chinensis] Length = 628 Score = 102 bits (253), Expect = 4e-20 Identities = 56/98 (57%), Positives = 62/98 (63%), Gaps = 6/98 (6%) Frame = +2 Query: 53 MWRSVSRQITSSLRK------KPFVSRFFSSGWNGGGYTIVDHTYDXXXXXXXXXXXXXX 214 MWR VSR + S R + + R FS+ + GGYT+VDHTYD Sbjct: 1 MWRCVSRGLGFSKRSISNDSIRSHIPRLFSTD-STGGYTVVDHTYDAVVVGAGGAGLRAA 59 Query: 215 XXXSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT 328 SEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT Sbjct: 60 IGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT 97 >ref|XP_002310225.1| predicted protein [Populus trichocarpa] gi|222853128|gb|EEE90675.1| predicted protein [Populus trichocarpa] Length = 633 Score = 101 bits (252), Expect = 6e-20 Identities = 56/102 (54%), Positives = 64/102 (62%), Gaps = 10/102 (9%) Frame = +2 Query: 53 MWRSVSRQI--------TSSLRKKPFVSRFFSSGWNGG--GYTIVDHTYDXXXXXXXXXX 202 MWR V+R + +S+ + +SRFFS+ GG YT+VDHTYD Sbjct: 1 MWRCVARGLRLPCSTKRSSNDSFRSHISRFFSTDTTGGRSSYTVVDHTYDAVVVGAGGAG 60 Query: 203 XXXXXXXSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT 328 SEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT Sbjct: 61 LRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT 102