BLASTX nr result
ID: Coptis24_contig00011247
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00011247
(1733 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera] 314 4e-83
ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containi... 311 3e-82
ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 296 9e-78
ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|2... 288 2e-75
emb|CBI36964.3| unnamed protein product [Vitis vinifera] 284 6e-74
>emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
Length = 494
Score = 314 bits (805), Expect = 4e-83
Identities = 162/362 (44%), Positives = 245/362 (67%), Gaps = 3/362 (0%)
Frame = +1
Query: 7 SAKNKSTYGALLHCFCCEEMTEKAMMLFGKIKELNFPINSFDYCSLMSLHLRLGQLEKVP 186
SAK TYGALL+C+C E M +KA+ LF K+KELNF ++ Y +++SL+LR+GQ EKVP
Sbjct: 125 SAKTNKTYGALLNCYCKENMVDKAVELFKKLKELNFVSSALSYNNMISLYLRVGQPEKVP 184
Query: 187 LLHEEIKQKGIKPHLFHYKLLINSYASLKDVKSVEGVMEEIKMIKGITPDWAFYSNVAAI 366
L E+++K I L+ Y LL+NSYAS+KD ++VE V+E++K +G+ DW Y N+A I
Sbjct: 185 SLVHEMEEKDIPADLYTYNLLMNSYASVKDFEAVEQVLEKMKK-RGVERDWFTYGNLANI 243
Query: 367 YVAAGYHEKAELTLKEIEISK-LNDPKAFHFLLSIYASMGKVEEVNRVWQSLKSAFPKTS 543
YV AG+ +KA L+++E +K L+DP+AF L+++YA +E VNR W+SLK A PK +
Sbjct: 244 YVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLYARTSNLEGVNRAWESLKLAHPKIN 303
Query: 544 NLSYLTMLQTLSRLEYMGGLKRCFDEWELHCSSYDIRLANVLIKAYLKRNMTEEANLLLS 723
N SYL ML LS+L + GL++CF EWE CS+YD+RL+NV++++YL R M EEANLL
Sbjct: 304 NKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRLSNVMLESYLNREMIEEANLLSE 363
Query: 724 HLLEKRYELNFRTYALFTEFYLMTHSMDLALKFMGLGTPYLRKSEREMY--KKKVHEFLK 897
+ ++ EL +T LF +FYL H +DLA+K++ +G + + ++ + FL+
Sbjct: 364 SIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADPENNKWFPTEETITMFLE 423
Query: 898 YFEEERDVCGAKELCNILKQVDFLDLEVYASLLCNNIPFERKERQAPQIMRGNGVEIISE 1077
YFEE +DV A++ C ++++ LD ++Y SLL I ++E + M+ +G+EI SE
Sbjct: 424 YFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTYIAAGKEEPLMSERMKDDGIEISSE 483
Query: 1078 SE 1083
+E
Sbjct: 484 TE 485
>ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial [Vitis vinifera]
gi|296089781|emb|CBI39600.3| unnamed protein product
[Vitis vinifera]
Length = 498
Score = 311 bits (797), Expect = 3e-82
Identities = 160/362 (44%), Positives = 245/362 (67%), Gaps = 3/362 (0%)
Frame = +1
Query: 7 SAKNKSTYGALLHCFCCEEMTEKAMMLFGKIKELNFPINSFDYCSLMSLHLRLGQLEKVP 186
SAK TYGALL+C+C E M +KA+ LF K+KELNF ++ Y +++SL+LR+GQ EKVP
Sbjct: 129 SAKTNKTYGALLNCYCKENMLDKAVELFKKLKELNFVSSALSYNNMISLYLRVGQPEKVP 188
Query: 187 LLHEEIKQKGIKPHLFHYKLLINSYASLKDVKSVEGVMEEIKMIKGITPDWAFYSNVAAI 366
L E+++K I L+ Y LL+NSYAS+KD ++VE V++++K +G+ DW Y N+A I
Sbjct: 189 SLVHEMEEKDIPADLYTYNLLMNSYASVKDFEAVEQVLDKMKK-RGVERDWFTYGNLANI 247
Query: 367 YVAAGYHEKAELTLKEIEISK-LNDPKAFHFLLSIYASMGKVEEVNRVWQSLKSAFPKTS 543
YV AG+ +KA L+++E +K L+DP+AF L+++YA +E VNR W+SLK A PK +
Sbjct: 248 YVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLYARTSNLEGVNRAWESLKLAHPKIN 307
Query: 544 NLSYLTMLQTLSRLEYMGGLKRCFDEWELHCSSYDIRLANVLIKAYLKRNMTEEANLLLS 723
N SYL ML LS+L + GL++CF EWE CS+YD+RL+NV++++YL R + EEANLL
Sbjct: 308 NKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRLSNVMLESYLNREIIEEANLLSE 367
Query: 724 HLLEKRYELNFRTYALFTEFYLMTHSMDLALKFMGLGTPYLRKSEREMY--KKKVHEFLK 897
+ ++ EL +T LF +FYL H +DLA+K++ +G + + ++ + FL+
Sbjct: 368 SIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADPENNKWFPTEETITMFLE 427
Query: 898 YFEEERDVCGAKELCNILKQVDFLDLEVYASLLCNNIPFERKERQAPQIMRGNGVEIISE 1077
YFEE +DV A++ C ++++ LD ++Y SLL I ++E + M+ +G+EI SE
Sbjct: 428 YFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTYIAAGKEEPLMSERMKDDGIEISSE 487
Query: 1078 SE 1083
+E
Sbjct: 488 TE 489
>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02370, mitochondrial-like [Vitis vinifera]
Length = 506
Score = 296 bits (759), Expect = 9e-78
Identities = 157/358 (43%), Positives = 226/358 (63%), Gaps = 1/358 (0%)
Frame = +1
Query: 7 SAKNKSTYGALLHCFCCEEMTEKAMMLFGKIKELNFPINSFDYCSLMSLHLRLGQLEKVP 186
SAKN TYG LL+C+C E+M EKA+ LF K+ ELNF S + +LMSLH+RLG+ E VP
Sbjct: 140 SAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTFNNLMSLHMRLGKPEMVP 199
Query: 187 LLHEEIKQKGIKPHLFHYKLLINSYASLKDVKSVEGVMEEIKMIKGITPDWAFYSNVAAI 366
L +E+K++ I P F Y +L+ SYA L D++ E V+EEIK W YSN+AA+
Sbjct: 200 PLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKRENEDKLSWTTYSNLAAV 259
Query: 367 YVAAGYHEKAELTLKEIEISK-LNDPKAFHFLLSIYASMGKVEEVNRVWQSLKSAFPKTS 543
YV A EKAEL LK++E +D A+HFL+S+YA + + EVNRVW SLKSAFPKT+
Sbjct: 260 YVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLYAGINNLSEVNRVWNSLKSAFPKTN 319
Query: 544 NLSYLTMLQTLSRLEYMGGLKRCFDEWELHCSSYDIRLANVLIKAYLKRNMTEEANLLLS 723
N+SY MLQ L+ L + GLK CF+EW+ C S+D+RLANV ++A+L +M ++A +L
Sbjct: 320 NMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAVRAFLGWDMIKDAESILY 379
Query: 724 HLLEKRYELNFRTYALFTEFYLMTHSMDLALKFMGLGTPYLRKSEREMYKKKVHEFLKYF 903
+++ + +F +L +D ALK+M ++ +E + ++V FLKYF
Sbjct: 380 EAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEVKNNEWQPAPERVLAFLKYF 439
Query: 904 EEERDVCGAKELCNILKQVDFLDLEVYASLLCNNIPFERKERQAPQIMRGNGVEIISE 1077
EEE+DV GA++ C ILK + LD Y LL + R E + + M+ + +E+ S+
Sbjct: 440 EEEKDVEGAEKFCKILKNISGLDSNAYQLLLQTXVAAGRTEPEMRKRMKEDDIEVDSK 497
>ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|222861744|gb|EEE99286.1|
predicted protein [Populus trichocarpa]
Length = 473
Score = 288 bits (738), Expect = 2e-75
Identities = 159/360 (44%), Positives = 224/360 (62%), Gaps = 1/360 (0%)
Frame = +1
Query: 7 SAKNKSTYGALLHCFCCEEMTEKAMMLFGKIKELNFPINSFDYCSLMSLHLRLGQLEKVP 186
S +N ST+GALL C+C E M+EKA+ LF K+ ++ F + S + +L+SLHLRL Q EKV
Sbjct: 106 SEQNHSTHGALLSCYCRELMSEKALTLFEKMDKMKFLLTSLPFNNLISLHLRLDQPEKVL 165
Query: 187 LLHEEIKQKGIKPHLFHYKLLINSYASLKDVKSVEGVMEEIKMIKGITPDWAFYSNVAAI 366
+ +E+KQKG+ P F Y + + SY L D + VE V++E+KM W Y+N+A I
Sbjct: 166 PIVQEMKQKGVSPCTFTYNMWMQSYGCLNDFEGVERVLDEMKMDGQKNFSWTTYTNLATI 225
Query: 367 YVAAGYHEKAELTLKEIEISKLNDPK-AFHFLLSIYASMGKVEEVNRVWQSLKSAFPKTS 543
YV AG+ +KAE LK++E D + A+HFL+++YA + EVNRVW SLKS F T+
Sbjct: 226 YVKAGHFDKAESALKKVEEQIERDYREAYHFLITLYAGTSNLGEVNRVWNSLKSNFHTTT 285
Query: 544 NLSYLTMLQTLSRLEYMGGLKRCFDEWELHCSSYDIRLANVLIKAYLKRNMTEEANLLLS 723
N+SYLTML TL++L+ + GL +CF EWE C SYD+RLANV I+A L+ +M EEA L+
Sbjct: 286 NVSYLTMLHTLAKLKDVEGLLKCFKEWESSCHSYDMRLANVAIRACLEHDMYEEAALIFD 345
Query: 724 HLLEKRYELNFRTYALFTEFYLMTHSMDLALKFMGLGTPYLRKSEREMYKKKVHEFLKYF 903
L++ L F +F F+L H +DLALK M +++ E + K V F YF
Sbjct: 346 DALKRTEGLFFNAREMFMVFFLKNHQLDLALKHMKAAFSEVKEIEWQPEPKTVSAFFAYF 405
Query: 904 EEERDVCGAKELCNILKQVDFLDLEVYASLLCNNIPFERKERQAPQIMRGNGVEIISESE 1083
E+E+DV GA+ LC ILK ++ LD Y LL I + + Q + +G+EI E E
Sbjct: 406 EDEKDVNGAERLCKILKHINRLDSNAYDLLLKTYIAAGKLAPEMRQRLEEDGIEINPELE 465
>emb|CBI36964.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 284 bits (726), Expect = 6e-74
Identities = 147/319 (46%), Positives = 208/319 (65%), Gaps = 1/319 (0%)
Frame = +1
Query: 7 SAKNKSTYGALLHCFCCEEMTEKAMMLFGKIKELNFPINSFDYCSLMSLHLRLGQLEKVP 186
SAKN TYG LL+C+C E+M EKA+ LF K+ ELNF S + +LMSLH+RLG+ E VP
Sbjct: 179 SAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTFNNLMSLHMRLGKPEMVP 238
Query: 187 LLHEEIKQKGIKPHLFHYKLLINSYASLKDVKSVEGVMEEIKMIKGITPDWAFYSNVAAI 366
L +E+K++ I P F Y +L+ SYA L D++ E V+EEIK W YSN+AA+
Sbjct: 239 PLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKRENEDKLSWTTYSNLAAV 298
Query: 367 YVAAGYHEKAELTLKEIEISK-LNDPKAFHFLLSIYASMGKVEEVNRVWQSLKSAFPKTS 543
YV A EKAEL LK++E +D A+HFL+S+YA + + EVNRVW SLKSAFPKT+
Sbjct: 299 YVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLYAGINNLSEVNRVWNSLKSAFPKTN 358
Query: 544 NLSYLTMLQTLSRLEYMGGLKRCFDEWELHCSSYDIRLANVLIKAYLKRNMTEEANLLLS 723
N+SY MLQ L+ L + GLK CF+EW+ C S+D+RLANV ++A+L +M ++A +L
Sbjct: 359 NMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAVRAFLGWDMIKDAESILY 418
Query: 724 HLLEKRYELNFRTYALFTEFYLMTHSMDLALKFMGLGTPYLRKSEREMYKKKVHEFLKYF 903
+++ + +F +L +D ALK+M ++ +E + ++V FLKYF
Sbjct: 419 EAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEVKNNEWQPAPERVLAFLKYF 478
Query: 904 EEERDVCGAKELCNILKQV 960
EEE+DV GA++ C ILK +
Sbjct: 479 EEEKDVEGAEKFCKILKNI 497