BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011234
         (202 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003610808.1| Pentatricopeptide repeat-containing protein ...    71   1e-10
ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_003616261.1| Pentatricopeptide repeat-containing protein ...    70   2e-10
ref|XP_002310456.1| predicted protein [Populus trichocarpa] gi|2...    70   2e-10
ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containi...    69   3e-10

>ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512143|gb|AES93766.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 31/67 (46%), Positives = 45/67 (67%)
 Frame = -2

Query: 201 FSILMDALCKQGKTDEAFEVFQVMSQRGINPNVFTYNALIDGLYTSGKGKDAIRLFNEMT 22
           ++ ++D LCK GKTDEA+++   M ++G NPNV TY A+IDG   SGK +  + LF +M 
Sbjct: 724 YTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMC 783

Query: 21  GRGILPN 1
            +G  PN
Sbjct: 784 SKGCAPN 790



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/67 (40%), Positives = 37/67 (55%)
 Frame = -2

Query: 201 FSILMDALCKQGKTDEAFEVFQVMSQRGINPNVFTYNALIDGLYTSGKGKDAIRLFNEMT 22
           +  L+D LCK  +  EA E+   M   G  PN   Y+A+IDG    GK +DA  +F +M+
Sbjct: 619 YGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMS 678

Query: 21  GRGILPN 1
            RG  PN
Sbjct: 679 ERGYSPN 685


>ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 32/66 (48%), Positives = 44/66 (66%)
 Frame = -2

Query: 201 FSILMDALCKQGKTDEAFEVFQVMSQRGINPNVFTYNALIDGLYTSGKGKDAIRLFNEMT 22
           ++IL++ALCK GK D+AF++  VM  RGI PN+ TYN LI GL    +  +A+ LFN M 
Sbjct: 370 YTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNME 429

Query: 21  GRGILP 4
             G+ P
Sbjct: 430 SLGVAP 435


>ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355517596|gb|AES99219.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 811

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 33/67 (49%), Positives = 43/67 (64%)
 Frame = -2

Query: 201 FSILMDALCKQGKTDEAFEVFQVMSQRGINPNVFTYNALIDGLYTSGKGKDAIRLFNEMT 22
           F+ L+D  CK GK D A   F++M  RGI P++ TYNALI+GL   G  K+A +L NEM 
Sbjct: 334 FTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMI 393

Query: 21  GRGILPN 1
           G G  P+
Sbjct: 394 GNGFKPD 400



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 26/67 (38%), Positives = 41/67 (61%)
 Frame = -2

Query: 201 FSILMDALCKQGKTDEAFEVFQVMSQRGINPNVFTYNALIDGLYTSGKGKDAIRLFNEMT 22
           F+ L+   C+    +E F +  VM    I+P+VFTY+ALI+GL    + ++A  LF+EM 
Sbjct: 264 FNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMC 323

Query: 21  GRGILPN 1
             G++PN
Sbjct: 324 EMGLVPN 330


>ref|XP_002310456.1| predicted protein [Populus trichocarpa] gi|222853359|gb|EEE90906.1|
           predicted protein [Populus trichocarpa]
          Length = 721

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 201 FSILMDALCKQGKTDEAFEVFQVMSQRGINPNVFTYNALIDGLYTSGKGKDAIRLFNEMT 22
           ++ ++D LCK GKTDEA+++  +M ++G NPNV TY A+IDG   SG+ +  + L  +M+
Sbjct: 487 YTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMS 546

Query: 21  GRGILPN 1
            +G  PN
Sbjct: 547 SKGCAPN 553



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/67 (40%), Positives = 41/67 (61%)
 Frame = -2

Query: 201 FSILMDALCKQGKTDEAFEVFQVMSQRGINPNVFTYNALIDGLYTSGKGKDAIRLFNEMT 22
           +  L+D  CK GK DEA EVF  M + G +PNV+TY++LID L+   +   A+++ ++M 
Sbjct: 417 YDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKML 476

Query: 21  GRGILPN 1
                PN
Sbjct: 477 ENSCAPN 483


>ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 31/67 (46%), Positives = 46/67 (68%)
 Frame = -2

Query: 201 FSILMDALCKQGKTDEAFEVFQVMSQRGINPNVFTYNALIDGLYTSGKGKDAIRLFNEMT 22
           +SI++DALCK  + DEA ++F+ M  +G+ P V +Y +LI G    GK ++A RLFNEM 
Sbjct: 245 YSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMV 304

Query: 21  GRGILPN 1
            +G+ PN
Sbjct: 305 NQGVQPN 311



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 31/67 (46%), Positives = 43/67 (64%)
 Frame = -2

Query: 201 FSILMDALCKQGKTDEAFEVFQVMSQRGINPNVFTYNALIDGLYTSGKGKDAIRLFNEMT 22
           F++L+D LCK+GK  EA ++ +VM QRGI PN+ TYN+LI+G    G    A  LF  M 
Sbjct: 315 FNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMP 374

Query: 21  GRGILPN 1
            +G  P+
Sbjct: 375 SKGCEPD 381