BLASTX nr result
ID: Coptis24_contig00011233
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00011233
(219 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002328356.1| predicted protein [Populus trichocarpa] gi|2... 77 1e-12
ref|XP_003616261.1| Pentatricopeptide repeat-containing protein ... 77 2e-12
ref|XP_003612846.1| Pentatricopeptide repeat-containing protein ... 76 3e-12
ref|XP_003620118.1| Pentatricopeptide repeat protein-like protei... 76 3e-12
gb|ACU25598.1| pentatricopeptide repeat-containing protein [Dura... 76 3e-12
>ref|XP_002328356.1| predicted protein [Populus trichocarpa] gi|222838071|gb|EEE76436.1|
predicted protein [Populus trichocarpa]
Length = 613
Score = 77.0 bits (188), Expect = 1e-12
Identities = 35/70 (50%), Positives = 49/70 (70%)
Frame = -1
Query: 210 EMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACCKDG 31
EM +RGI P+VFTYN+++ G G+ +A RLF EM GR ++PN TF I++D CK+G
Sbjct: 258 EMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEG 317
Query: 30 MVDEAFELFQ 1
MV EA +F+
Sbjct: 318 MVSEARLVFE 327
Score = 65.1 bits (157), Expect = 6e-09
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
V +M + GI+PD T+NALI+GL GK K+A+ LFNEM RG PN ++ +I+ C
Sbjct: 150 VLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLC 209
Query: 39 KDGMVDEAFELFQ 1
K G A ++F+
Sbjct: 210 KTGNTSMAVDVFK 222
Score = 62.8 bits (151), Expect = 3e-08
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = -1
Query: 210 EMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACCKDG 31
EM + +NPD TY+ L+ GL G+ K+A+ LF EM G PN T+ I++D CK G
Sbjct: 398 EMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHG 457
Query: 30 MVDEAFELFQ 1
+DEA +L +
Sbjct: 458 HLDEALKLLK 467
Score = 60.5 bits (145), Expect = 1e-07
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
VF+ M+++G+ PD+ TYNAL+DG +A ++F M +G P H++ I+I+ C
Sbjct: 325 VFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYC 384
Query: 39 KDGMVDEAFEL 7
K +DEA L
Sbjct: 385 KSRRMDEAKSL 395
Score = 58.9 bits (141), Expect = 4e-07
Identities = 28/70 (40%), Positives = 43/70 (61%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
+F EM +RG P+V +Y +I+GL +G A+ +F +M G PN T+ IID+ C
Sbjct: 185 LFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLC 244
Query: 39 KDGMVDEAFE 10
KD +V++A E
Sbjct: 245 KDRLVNDAME 254
Score = 54.7 bits (130), Expect = 8e-06
Identities = 23/73 (31%), Positives = 47/73 (64%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
+ + M ++ + P++ Y LI+G++ +GK + A LF+++ G G P+ T+ ++I
Sbjct: 465 LLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLL 524
Query: 39 KDGMVDEAFELFQ 1
K+G+ DEA++LF+
Sbjct: 525 KEGLSDEAYDLFR 537
>ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 811
Score = 76.6 bits (187), Expect = 2e-12
Identities = 36/70 (51%), Positives = 46/70 (65%)
Frame = -1
Query: 216 FQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACCK 37
F+ M RGI PD+ TYNALI+GL G K+A +L NEM G G P+ TF ++D CCK
Sbjct: 354 FEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCK 413
Query: 36 DGMVDEAFEL 7
DG +D A E+
Sbjct: 414 DGDMDSALEI 423
Score = 65.1 bits (157), Expect = 6e-09
Identities = 32/69 (46%), Positives = 44/69 (63%)
Frame = -1
Query: 207 MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACCKDGM 28
M I+PDVFTY+ALI+GL + ++A LF+EM G++PNG TF +ID CK G
Sbjct: 287 MESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGK 346
Query: 27 VDEAFELFQ 1
+D A F+
Sbjct: 347 IDLALRNFE 355
>ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 892
Score = 76.3 bits (186), Expect = 3e-12
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
VF+EM GI PDV++Y+ LIDG G+ A +F EM GILPN +++ I+ID C
Sbjct: 302 VFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFC 361
Query: 39 KDGMVDEAFELFQ 1
K+G VD+A E+F+
Sbjct: 362 KEGRVDKALEVFE 374
Score = 64.7 bits (156), Expect = 8e-09
Identities = 28/73 (38%), Positives = 47/73 (64%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
VF+EM GI P++++Y+ LIDG G+ A+ +F EM GILP+ +++ I+ID C
Sbjct: 337 VFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFC 396
Query: 39 KDGMVDEAFELFQ 1
+ G +D A + ++
Sbjct: 397 RKGDMDSAIKFWE 409
>ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat
protein-like protein [Medicago truncatula]
Length = 841
Score = 76.3 bits (186), Expect = 3e-12
Identities = 36/68 (52%), Positives = 47/68 (69%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
++ E + I PDVFTYNALI G GK KDAI LFN+MT + I+P+ +TF I++D C
Sbjct: 355 LYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFC 414
Query: 39 KDGMVDEA 16
KDG + EA
Sbjct: 415 KDGNIKEA 422
Score = 60.5 bits (145), Expect = 1e-07
Identities = 33/71 (46%), Positives = 45/71 (63%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
+F+EM + I PDV TY++LIDGL SG+ A+ L +EM RG P+ T+ I+DA C
Sbjct: 495 LFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALC 554
Query: 39 KDGMVDEAFEL 7
K VD+A L
Sbjct: 555 KKHHVDKAITL 565
Score = 57.8 bits (138), Expect = 9e-07
Identities = 29/73 (39%), Positives = 44/73 (60%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
V M ++ I PDV TY++L+DG + A +FN M+ RG+ N ++ I+I+ C
Sbjct: 425 VLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFC 484
Query: 39 KDGMVDEAFELFQ 1
K MVDEA +LF+
Sbjct: 485 KIKMVDEAMKLFK 497
Score = 55.5 bits (132), Expect = 5e-06
Identities = 24/70 (34%), Positives = 43/70 (61%)
Frame = -1
Query: 210 EMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACCKDG 31
EM RG PD+ TYN+++D L AI L ++ G+GI P+ +T+ I++ C+ G
Sbjct: 533 EMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSG 592
Query: 30 MVDEAFELFQ 1
+++A ++F+
Sbjct: 593 KLEDARKVFE 602
>gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 76.3 bits (186), Expect = 3e-12
Identities = 35/69 (50%), Positives = 47/69 (68%)
Frame = -1
Query: 207 MSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACCKDGM 28
M G+ PDV+TY+ LI+GL K +A LFNEM RG++PNG TF +ID CK+GM
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGM 256
Query: 27 VDEAFELFQ 1
VD A E+++
Sbjct: 257 VDSAMEIYK 265
Score = 62.4 bits (150), Expect = 4e-08
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
++++M +G +PD+ TYN LI GL G K L +EM+ G+ P+ T+ +ID CC
Sbjct: 263 IYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCC 322
Query: 39 KDGMVDEAFE 10
K+G ++ AFE
Sbjct: 323 KEGDLETAFE 332
Score = 55.1 bits (131), Expect = 6e-06
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = -1
Query: 219 VFQEMSQRGINPDVFTYNALIDGLYTSGKGKDAIRLFNEMTGRGILPNGHTFGIIIDACC 40
VF +++ G+ P V ++N L++G G + RL + M G+ P+ +T+ ++I+ C
Sbjct: 158 VFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLC 217
Query: 39 KDGMVDEAFELF 4
K+ VDEA ELF
Sbjct: 218 KESKVDEANELF 229