BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011173
         (1629 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chlor...   443   e-122
gb|ABK95213.1| unknown [Populus trichocarpa]                          430   e-118
ref|XP_002315468.1| predicted protein [Populus trichocarpa] gi|2...   427   e-117
ref|XP_002519326.1| 50S ribosomal protein L3, putative [Ricinus ...   420   e-115
ref|XP_004147630.1| PREDICTED: 50S ribosomal protein L3-2, chlor...   413   e-113

>ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Vitis vinifera]
            gi|297736812|emb|CBI26013.3| unnamed protein product
            [Vitis vinifera]
          Length = 307

 Score =  443 bits (1139), Expect = e-122
 Identities = 218/283 (77%), Positives = 238/283 (84%)
 Frame = -1

Query: 1287 RRFSGGESLILEDDYDGSNVIKAAKPGIMTPKSRRTGVIAVKCGMTALWDKWGARIPITV 1108
            RRF G ESLI E+       I   KPG+M+P S+RTG IAVKCGM+ALWDKWGAR+PITV
Sbjct: 31   RRF-GSESLIDEEPR-----IIVPKPGVMSPNSKRTGAIAVKCGMSALWDKWGARVPITV 84

Query: 1107 LWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLREFPVTE 928
            LW+DDNIV+Q KT +KE   ALQ+GCGQKK KHLTKPEVGHFR+QGVP+KRKLREFPVTE
Sbjct: 85   LWLDDNIVSQVKTFEKEGLNALQVGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTE 144

Query: 927  DALLPVGTPITVRHFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHRSIGST 748
            DALLPVGT I VRHFVPGQYVDVTGI++GKGFQGGMKRWGF+GMPASHGASLSHRSIGST
Sbjct: 145  DALLPVGTTIGVRHFVPGQYVDVTGITRGKGFQGGMKRWGFKGMPASHGASLSHRSIGST 204

Query: 747  GQRDAPGRVFXXXXXXXXXXXKQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFVFIKDA 568
            GQRDAPG+VF           KQ TVKNVWVYKIDP RNLMWVRGQVPGAEGNFVFIKDA
Sbjct: 205  GQRDAPGKVFKGKKMPGRMGGKQRTVKNVWVYKIDPTRNLMWVRGQVPGAEGNFVFIKDA 264

Query: 567  VYKKPDHSILPFPTYLSAPDGETAELEPLVADLGELDPFMAAD 439
            VYKKPD SILPFPTY  A D +   LEP+VADLG++DPFM AD
Sbjct: 265  VYKKPDASILPFPTYFPAEDEDPTVLEPIVADLGDIDPFMVAD 307


>gb|ABK95213.1| unknown [Populus trichocarpa]
          Length = 315

 Score =  430 bits (1106), Expect = e-118
 Identities = 209/270 (77%), Positives = 229/270 (84%)
 Frame = -1

Query: 1248 DYDGSNVIKAAKPGIMTPKSRRTGVIAVKCGMTALWDKWGARIPITVLWVDDNIVTQTKT 1069
            +Y   + I  AKPG+MTP S+RTGV+AVKCGMTALWDKWGARIPITVLWVDDNIV+Q KT
Sbjct: 48   EYHQQSRIIEAKPGVMTPNSKRTGVVAVKCGMTALWDKWGARIPITVLWVDDNIVSQVKT 107

Query: 1068 LDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLREFPVTEDALLPVGTPITVR 889
            ++KE   ALQ+GCGQKKEKHLTKPEVGHFR+QGVPMKRKLREFPVTEDALLPVGT + VR
Sbjct: 108  VEKEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVTEDALLPVGTYVGVR 167

Query: 888  HFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHRSIGSTGQRDAPGRVFXXX 709
            HFVPGQ+VDV GI+ GKGFQGGMKR GF+G PASHGASLSHRSIGSTGQRDAPG+VF   
Sbjct: 168  HFVPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLSHRSIGSTGQRDAPGKVFKGK 227

Query: 708  XXXXXXXXKQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFVFIKDAVYKKPDHSILPFP 529
                     Q TVKNVWVYKIDP RNLMWV+GQVPGAEGNFVFIKD+VYKKPD  +LPFP
Sbjct: 228  KMPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIKDSVYKKPDIQMLPFP 287

Query: 528  TYLSAPDGETAELEPLVADLGELDPFMAAD 439
            TY  A D + A  EPLVADLGE+DPFM AD
Sbjct: 288  TYFGAEDDDNA--EPLVADLGEVDPFMVAD 315


>ref|XP_002315468.1| predicted protein [Populus trichocarpa] gi|222864508|gb|EEF01639.1|
            predicted protein [Populus trichocarpa]
          Length = 320

 Score =  427 bits (1098), Expect = e-117
 Identities = 214/285 (75%), Positives = 236/285 (82%), Gaps = 2/285 (0%)
 Frame = -1

Query: 1287 RRFSGGESLI--LEDDYDGSNVIKAAKPGIMTPKSRRTGVIAVKCGMTALWDKWGARIPI 1114
            RRFS  ++L+   E  Y   + I  AKPG+MTP S+RTGVIAVKCGMTALWDKWGARIPI
Sbjct: 39   RRFSS-DALVDGSEIQYQQPSRIIEAKPGVMTPNSKRTGVIAVKCGMTALWDKWGARIPI 97

Query: 1113 TVLWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLREFPV 934
            TVLWVDDNIV+Q KT++KE   ALQ+GCGQKKEKHLTKPEVGHFR+QGVPMKRKLREFPV
Sbjct: 98   TVLWVDDNIVSQVKTVEKEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPV 157

Query: 933  TEDALLPVGTPITVRHFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHRSIG 754
            TE+ALLPVGT I VRHFVPGQ+VDV GI+ GKGFQGGMKR GF+G PASHGASLSHRSIG
Sbjct: 158  TENALLPVGTCIGVRHFVPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLSHRSIG 217

Query: 753  STGQRDAPGRVFXXXXXXXXXXXKQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFVFIK 574
            STGQRDAPG+VF            Q TVKNVWVYKIDP RNLMWV+GQVPGAEGNFVFIK
Sbjct: 218  STGQRDAPGKVFKGKKMPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIK 277

Query: 573  DAVYKKPDHSILPFPTYLSAPDGETAELEPLVADLGELDPFMAAD 439
            D+V+KKPD  ILPFPTY    D + +  EPLVADLGE+DPFM AD
Sbjct: 278  DSVFKKPDIQILPFPTYFETEDDDNS--EPLVADLGEVDPFMVAD 320


>ref|XP_002519326.1| 50S ribosomal protein L3, putative [Ricinus communis]
            gi|223541641|gb|EEF43190.1| 50S ribosomal protein L3,
            putative [Ricinus communis]
          Length = 311

 Score =  420 bits (1080), Expect = e-115
 Identities = 213/288 (73%), Positives = 235/288 (81%), Gaps = 5/288 (1%)
 Frame = -1

Query: 1287 RRFSGGESLILEDDYDGSNV-----IKAAKPGIMTPKSRRTGVIAVKCGMTALWDKWGAR 1123
            RRFS  +SLI     DGS +     I  AKPGIMTP S+RTG+IA+KCGMTALWDKWG R
Sbjct: 32   RRFSI-DSLI-----DGSQIQEEARILEAKPGIMTPHSKRTGIIALKCGMTALWDKWGER 85

Query: 1122 IPITVLWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLRE 943
            +PITVLWVDDNIVTQ KT++KE   ALQIG G KK KHLTKPEVGHFR+  VP+KRKLRE
Sbjct: 86   VPITVLWVDDNIVTQVKTVEKEGIFALQIGYGHKKAKHLTKPEVGHFRAHNVPLKRKLRE 145

Query: 942  FPVTEDALLPVGTPITVRHFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHR 763
            FPVTEDAL+PVGT + VRHFVPGQ+VD+TGI++GKGFQGGMKR GF+GMPA+HGASLSHR
Sbjct: 146  FPVTEDALIPVGTSLGVRHFVPGQFVDITGITRGKGFQGGMKRHGFKGMPATHGASLSHR 205

Query: 762  SIGSTGQRDAPGRVFXXXXXXXXXXXKQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFV 583
            S GSTGQRDAPG+VF            Q TVKNVWVYKIDP RN+MWVRGQVPGAEGNFV
Sbjct: 206  SGGSTGQRDAPGKVFKGKKMPGRMGGVQRTVKNVWVYKIDPTRNMMWVRGQVPGAEGNFV 265

Query: 582  FIKDAVYKKPDHSILPFPTYLSAPDGETAELEPLVADLGELDPFMAAD 439
            FIKDAVYKKPD S LPFPTYL A D ET   EPL+ADLGE+DPFM AD
Sbjct: 266  FIKDAVYKKPDISKLPFPTYLRAEDEETT--EPLIADLGEMDPFMVAD 311


>ref|XP_004147630.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Cucumis
            sativus] gi|449498766|ref|XP_004160627.1| PREDICTED: 50S
            ribosomal protein L3-2, chloroplastic-like [Cucumis
            sativus]
          Length = 328

 Score =  413 bits (1062), Expect = e-113
 Identities = 207/284 (72%), Positives = 231/284 (81%), Gaps = 1/284 (0%)
 Frame = -1

Query: 1287 RRFSGGESLILEDDYDGSNVIKAAKPGIMTPKSRRTGVIAVKCGMTALWDKWGARIPITV 1108
            R FS  +     D    ++ I  AKPG M   S RTGVIAVKCGM+ALWDKWGARIPITV
Sbjct: 45   RAFSTQDLTQASDGSLSASSIFEAKPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITV 104

Query: 1107 LWVDDNIVTQTKTLDKEVTTALQIGCGQKKEKHLTKPEVGHFRSQGVPMKRKLREFPVTE 928
            LWVDDNIV+Q KT++KE  TALQIGCGQKKEKHL+KPE+GHFR+QGVP+KRKLREFPV++
Sbjct: 105  LWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQ 164

Query: 927  DALLPVGTPITVRHFVPGQYVDVTGISKGKGFQGGMKRWGFRGMPASHGASLSHRSIGST 748
            DALLPVGT I VRHFVPGQYVDVTGIS+GKGFQG MKR GF+GMPASHGASLSHRS GST
Sbjct: 165  DALLPVGTEIGVRHFVPGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGST 224

Query: 747  GQRDAPGRVFXXXXXXXXXXXKQITVKNVWVYKIDPGRNLMWVRGQVPGAEGNFVFIKDA 568
            GQRDAPG+VF           KQ TVKNVW+YKIDP RNLMWV+G +PGAEGNFVFIKDA
Sbjct: 225  GQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKIDPARNLMWVKGPIPGAEGNFVFIKDA 284

Query: 567  VYKKPDHS-ILPFPTYLSAPDGETAELEPLVADLGELDPFMAAD 439
            VYKK + S ILPFPTY +    +T +LEPLVADLGE+DPFM  D
Sbjct: 285  VYKKLNKSAILPFPTYFATDGEDTDKLEPLVADLGEVDPFMTGD 328