BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011138
         (223 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_568133.1| DNA gyrase subunit B [Arabidopsis thaliana] gi|...    70   1e-16
ref|NP_850762.1| DNA gyrase subunit B [Arabidopsis thaliana] gi|...    70   1e-16
ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplast...    71   2e-16
emb|CBI30132.3| unnamed protein product [Vitis vinifera]               71   2e-16
sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chlor...    71   4e-16

>ref|NP_568133.1| DNA gyrase subunit B [Arabidopsis thaliana]
           gi|75165162|sp|Q94BZ7.1|GYRBM_ARATH RecName: Full=DNA
           gyrase subunit B, mitochondrial; Flags: Precursor
           gi|14517374|gb|AAK62578.1| AT3g10270/F14P13_13
           [Arabidopsis thaliana] gi|22655426|gb|AAM98305.1|
           At3g10270/F14P13_13 [Arabidopsis thaliana]
           gi|332003319|gb|AED90702.1| DNA gyrase subunit B
           [Arabidopsis thaliana]
          Length = 732

 Score = 70.5 bits (171), Expect(2) = 1e-16
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = -1

Query: 202 NKALEVTVWRDGMEYEQKYSRGKPVTALTCHVLPAELSAARGTKISFY 59
           ++ALEV+VWRDGME++Q YSRGKP+T LTC VLP E    +GT I F+
Sbjct: 214 SEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFW 261



 Score = 40.8 bits (94), Expect(2) = 1e-16
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -2

Query: 72  KLVFTTSVEFDQTTVAGRIRELAF 1
           K VFTT++EFD  T+AGRIRELAF
Sbjct: 264 KEVFTTAIEFDHNTIAGRIRELAF 287


>ref|NP_850762.1| DNA gyrase subunit B [Arabidopsis thaliana]
           gi|332003318|gb|AED90701.1| DNA gyrase subunit B
           [Arabidopsis thaliana]
          Length = 519

 Score = 70.5 bits (171), Expect(2) = 1e-16
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = -1

Query: 202 NKALEVTVWRDGMEYEQKYSRGKPVTALTCHVLPAELSAARGTKISFY 59
           ++ALEV+VWRDGME++Q YSRGKP+T LTC VLP E    +GT I F+
Sbjct: 214 SEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFW 261



 Score = 40.8 bits (94), Expect(2) = 1e-16
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -2

Query: 72  KLVFTTSVEFDQTTVAGRIRELAF 1
           K VFTT++EFD  T+AGRIRELAF
Sbjct: 264 KEVFTTAIEFDHNTIAGRIRELAF 287


>ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like
           [Vitis vinifera]
          Length = 719

 Score = 71.2 bits (173), Expect(2) = 2e-16
 Identities = 33/48 (68%), Positives = 40/48 (83%)
 Frame = -1

Query: 202 NKALEVTVWRDGMEYEQKYSRGKPVTALTCHVLPAELSAARGTKISFY 59
           ++ALEVTVWRDGMEY+QKYSRGKPVT+LT  VLP E +  +GT I F+
Sbjct: 201 SEALEVTVWRDGMEYQQKYSRGKPVTSLTHRVLPTESTDLQGTHIRFW 248



 Score = 38.9 bits (89), Expect(2) = 2e-16
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -2

Query: 72  KLVFTTSVEFDQTTVAGRIRELAF 1
           K VFTT ++FD  T+AGRIRELAF
Sbjct: 251 KEVFTTEIQFDYNTIAGRIRELAF 274


>emb|CBI30132.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score = 71.2 bits (173), Expect(2) = 2e-16
 Identities = 33/48 (68%), Positives = 40/48 (83%)
 Frame = -1

Query: 202 NKALEVTVWRDGMEYEQKYSRGKPVTALTCHVLPAELSAARGTKISFY 59
           ++ALEVTVWRDGMEY+QKYSRGKPVT+LT  VLP E +  +GT I F+
Sbjct: 189 SEALEVTVWRDGMEYQQKYSRGKPVTSLTHRVLPTESTDLQGTHIRFW 236



 Score = 38.9 bits (89), Expect(2) = 2e-16
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -2

Query: 72  KLVFTTSVEFDQTTVAGRIRELAF 1
           K VFTT ++FD  T+AGRIRELAF
Sbjct: 239 KEVFTTEIQFDYNTIAGRIRELAF 262


>sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
           Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B
           subunit [Nicotiana benthamiana]
          Length = 731

 Score = 71.2 bits (173), Expect(2) = 4e-16
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = -1

Query: 202 NKALEVTVWRDGMEYEQKYSRGKPVTALTCHVLPAELSAARGTKISFY 59
           ++ALEVT+WRDG EY+QKYSRGKP+T L CH LP E+   +GT I F+
Sbjct: 213 SQALEVTIWRDGKEYQQKYSRGKPITTLICHDLPVEMRDRQGTAIRFW 260



 Score = 38.1 bits (87), Expect(2) = 4e-16
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -2

Query: 72  KLVFTTSVEFDQTTVAGRIRELAF 1
           K VFTT ++FD  T+AGRIRELAF
Sbjct: 263 KEVFTTEMQFDYNTIAGRIRELAF 286