BLASTX nr result

ID: Coptis24_contig00011107 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011107
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280726.1| PREDICTED: probable receptor-like protein ki...    56   3e-06
emb|CAN67588.1| hypothetical protein VITISV_036280 [Vitis vinifera]    56   3e-06

>ref|XP_002280726.1| PREDICTED: probable receptor-like protein kinase At1g67000-like
           [Vitis vinifera]
          Length = 545

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
 Frame = +3

Query: 9   NNLFNYSTPFNQNITLFYDCGSSIPQLIGNTIPCLTNDINTSYYWFDYLNIG-LPQ--DV 179
           N LF+YS  F  N+T F+ C S+ P L  N   C  N  NTS     Y  IG +P   ++
Sbjct: 2   NYLFSYSPHFG-NLTRFFGCSSASPALASNKFSCRRN--NTSSIETGYFTIGSIPTNGNL 58

Query: 180 WSCGTVVKVPIL----QAILTTYTELLRSMEDGFDVVYVVPNNSECIQCENTRGQ 332
            +C   + VP+L     AI+     L + + DGF+V++++ +++ C +C  + G+
Sbjct: 59  GNCNVSITVPVLPSAVSAIINNSASLEQVLNDGFEVLWII-DDTACSECMGSGGR 112


>emb|CAN67588.1| hypothetical protein VITISV_036280 [Vitis vinifera]
          Length = 1379

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
 Frame = +3

Query: 9    NNLFNYSTPFNQNITLFYDCGSSIPQLIGNTIPCLTNDINTSYYWFDYLNIG-LPQD--V 179
            N LF+YS  F  N+T F+ C S+ P L  N   C  N  NTS     Y  IG +P +  +
Sbjct: 849  NYLFSYSPHFG-NLTRFFGCSSASPALASNKFSCRRN--NTSSIETGYFTIGSIPTBGNL 905

Query: 180  WSCGTVVKVPIL----QAILTTYTELLRSMEDGFDVVYVVPNNSECIQCENTRGQ 332
             +C   + VP+L     A++     L + + DGF+V+ ++ +++ C +C  + G+
Sbjct: 906  GNCNVSITVPVLPSAVSAJINNSASLEQVLNDGFEVLXII-DDTACSECMGSGGR 959


Top