BLASTX nr result

ID: Coptis24_contig00011053 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011053
         (636 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003516776.1| PREDICTED: uncharacterized protein LOC100780...    59   6e-07
ref|XP_003636002.1| Gamma-tubulin complex component [Medicago tr...    57   2e-06
ref|XP_002515845.1| gamma-tubulin complex component, putative [R...    57   2e-06

>ref|XP_003516776.1| PREDICTED: uncharacterized protein LOC100780017 [Glycine max]
          Length = 1179

 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 25/32 (78%), Positives = 30/32 (93%)
 Frame = +3

Query: 3    LNHFVSMLQQYVQSQLSDVSWCKFLHSLKHQV 98
            +NHFVS LQQYV+SQLS VSWC+FLHSL+H+V
Sbjct: 1020 INHFVSTLQQYVESQLSHVSWCRFLHSLQHKV 1051


>ref|XP_003636002.1| Gamma-tubulin complex component [Medicago truncatula]
            gi|355501937|gb|AES83140.1| Gamma-tubulin complex
            component [Medicago truncatula]
          Length = 1206

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 24/32 (75%), Positives = 30/32 (93%)
 Frame = +3

Query: 3    LNHFVSMLQQYVQSQLSDVSWCKFLHSLKHQV 98
            ++HFVS LQQYV+SQLS VSWC+FLHSL+H+V
Sbjct: 1034 ISHFVSTLQQYVESQLSHVSWCRFLHSLQHKV 1065


>ref|XP_002515845.1| gamma-tubulin complex component, putative [Ricinus communis]
            gi|223545000|gb|EEF46514.1| gamma-tubulin complex
            component, putative [Ricinus communis]
          Length = 1209

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 23/32 (71%), Positives = 30/32 (93%)
 Frame = +3

Query: 3    LNHFVSMLQQYVQSQLSDVSWCKFLHSLKHQV 98
            +NHF+S LQQYVQSQLS +SWC+FLH+LK++V
Sbjct: 1052 VNHFISTLQQYVQSQLSHISWCRFLHNLKYKV 1083


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