BLASTX nr result

ID: Coptis24_contig00010929 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010929
         (1689 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGE46020.1| putative AT-hook DNA-binding protein [Elaeis guin...   290   6e-76
ref|XP_002275328.1| PREDICTED: uncharacterized protein LOC100263...   281   3e-73
emb|CAN64876.1| hypothetical protein VITISV_030792 [Vitis vinifera]   281   4e-73
ref|XP_002510726.1| DNA binding protein, putative [Ricinus commu...   270   9e-70
ref|XP_002307818.1| predicted protein [Populus trichocarpa] gi|2...   245   3e-62

>gb|AGE46020.1| putative AT-hook DNA-binding protein [Elaeis guineensis]
          Length = 362

 Score =  290 bits (743), Expect = 6e-76
 Identities = 185/368 (50%), Positives = 207/368 (56%), Gaps = 13/368 (3%)
 Frame = +3

Query: 210  SEAGIMSGRES-SYGIQKHQPVST--GTPNMRLGFSSDGTAVYKPILTTATTSPTYQQPI 380
            SE GIMSGRES + G+QK  PV +     +MRL F+ DGTA+YKPI T++   P YQ   
Sbjct: 5    SEPGIMSGRESFNVGMQK-SPVQSQPSMQSMRLAFAPDGTAIYKPITTSSPPPPPYQGGG 63

Query: 381  TA------ENAVATTVIPQGISTSINIGEQMXXXXXXXXXXXXDGTMXXXXXXXXXXXXX 542
             A      +      + P G++  IN+GE +            DGTM             
Sbjct: 64   GAGSTGGGDGPSPAAITPHGLN--INVGEPVKRKRGRPRKYGPDGTMSLALTTVSPTAAV 121

Query: 543  XXXXXXXXQQNVQPSGGFXXXXXXXXXXXXMKKSRGRPPGSGKKQQIAALGSAGIGFTPH 722
                         PS               MKK+RGRPPGSGKKQQ+AALGSAGIGFTPH
Sbjct: 122  SPGSG-----GFSPSSAGAGNPASSASAEAMKKARGRPPGSGKKQQLAALGSAGIGFTPH 176

Query: 723  VITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEIXXX 902
            VITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEI   
Sbjct: 177  VITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSL 236

Query: 903  XXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXSPVQVVVGSFIADGRKDL 1082
                       QRSRTGGLSVS                    SPVQVVVGSFIADG+K+ 
Sbjct: 237  SGSFLLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGKKE- 295

Query: 1083 KPNH---SEPAAAPAKLXXXXXXXXXXXXXXRGTLSE-XXXXXXXXLNHSTGACNNSNAQ 1250
             P H   S+P  AP KL              RGTLSE         LN STG CNNSN Q
Sbjct: 296  -PKHTAPSDPTLAPGKLAAGGAAAGANSPPSRGTLSESSGGGPGSPLNQSTGTCNNSNQQ 354

Query: 1251 GMANVPWK 1274
            G++N+PWK
Sbjct: 355  GLSNMPWK 362


>ref|XP_002275328.1| PREDICTED: uncharacterized protein LOC100263332 [Vitis vinifera]
            gi|297745600|emb|CBI40765.3| unnamed protein product
            [Vitis vinifera]
          Length = 353

 Score =  281 bits (720), Expect = 3e-73
 Identities = 181/369 (49%), Positives = 205/369 (55%), Gaps = 11/369 (2%)
 Frame = +3

Query: 201  MSGSEAGIMSGRES-SYGIQKHQ-PVSTGTPNMRLGFSSDGTAVYKPILTTATTSPTYQQ 374
            MSGSE GIM+ RE  S G+QK+  P      NMRL FS DG AVYKP+   + TSP YQ 
Sbjct: 1    MSGSETGIMTTREPFSMGLQKNAVPSQPVIQNMRLAFSPDGAAVYKPV---SGTSPPYQS 57

Query: 375  P--ITAENAVATTVIPQGISTSINIGEQMXXXXXXXXXXXXDGTMXXXXXXXXXXXXXXX 548
                  + +    +IP G++ ++   E +            DGTM               
Sbjct: 58   SGGTGGDGSTGGAIIPHGLNMNMG-SEPLKRKRGRPRKYGPDGTMALALSPAPSGV---- 112

Query: 549  XXXXXXQQNVQPSGGFXXXXXXXXXXXX---MKKSRGRPPGSGKKQQIAALGSAGIGFTP 719
                    NV  SGG                +KK+RGRPPGS KKQQ+ ALGSAG+GFTP
Sbjct: 113  --------NVSQSGGAFSSPPASAGSASPSSLKKARGRPPGSSKKQQMEALGSAGVGFTP 164

Query: 720  HVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEIXX 899
            HVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQ ATSGGTVTYEGRFEI  
Sbjct: 165  HVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPATSGGTVTYEGRFEILS 224

Query: 900  XXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXSPVQVVVGSFIADGRKD 1079
                        QRSRTGGLSVS                    SPVQVVVGSFIADGRK+
Sbjct: 225  LSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKE 284

Query: 1080 LK-PNHSEPAAAPAKL---XXXXXXXXXXXXXXRGTLSEXXXXXXXXLNHSTGACNNSNA 1247
             K  +  EP++AP K+                 RGTLSE        LN STGACNNSN 
Sbjct: 285  SKSASQVEPSSAPPKIAPVGGGGGVTGTSSPPSRGTLSESSGGPGSPLNQSTGACNNSNP 344

Query: 1248 QGMANVPWK 1274
             GM ++PWK
Sbjct: 345  PGMTSIPWK 353


>emb|CAN64876.1| hypothetical protein VITISV_030792 [Vitis vinifera]
          Length = 390

 Score =  281 bits (719), Expect = 4e-73
 Identities = 186/394 (47%), Positives = 213/394 (54%), Gaps = 12/394 (3%)
 Frame = +3

Query: 201  MSGSEAGIMSGRES-SYGIQKHQ-PVSTGTPNMRLGFSSDGTAVYKPILTTATTSPTYQQ 374
            MSGSE GIM+ RE  S G+QK+  P      NMRL FS DG AVYKP+   + TSP YQ 
Sbjct: 1    MSGSETGIMTTREPFSMGLQKNAVPSQPVIQNMRLAFSPDGAAVYKPV---SGTSPPYQS 57

Query: 375  P--ITAENAVATTVIPQGISTSINIGEQMXXXXXXXXXXXXDGTMXXXXXXXXXXXXXXX 548
                  + +    +IP G++ ++   E +            DGTM               
Sbjct: 58   SGGTGGDGSTGGAIIPHGLNMNMG-SEPLKRKRGRPRKYGPDGTMALALSPAPSGV---- 112

Query: 549  XXXXXXQQNVQPSGGFXXXXXXXXXXXX---MKKSRGRPPGSGKKQQIAALGSAGIGFTP 719
                    NV  SGG                +KK+RGRPPGS KKQQ+ ALGSAG+GFTP
Sbjct: 113  --------NVSQSGGAFSSPPASAGSASPSSLKKARGRPPGSSKKQQMEALGSAGVGFTP 164

Query: 720  HVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEIXX 899
            HVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQ ATSGGTVTYEGRFEI  
Sbjct: 165  HVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPATSGGTVTYEGRFEILS 224

Query: 900  XXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXSPVQVVVGSFIADGRKD 1079
                        QRSRTGGLSVS                    SPVQVVVGSFIADGRK+
Sbjct: 225  LSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKE 284

Query: 1080 LK-PNHSEPAAAPAKL---XXXXXXXXXXXXXXRGTLSEXXXXXXXXLNHSTGACNNSNA 1247
             K  +  EP++AP K+                 RGTLSE        LN STGACNNSN 
Sbjct: 285  SKSASQVEPSSAPPKIAPVGGGGGVTGTSSPPSRGTLSESSGGPGSPLNQSTGACNNSNP 344

Query: 1248 QGMANVPWK*PS*FLTTSTPICVVG-LGLMNSFI 1346
             GM ++PW           P  V G LG ++ F+
Sbjct: 345  PGMTSIPWNLTLLLAVKFQPSSVTGDLGRVSRFV 378


>ref|XP_002510726.1| DNA binding protein, putative [Ricinus communis]
            gi|223551427|gb|EEF52913.1| DNA binding protein, putative
            [Ricinus communis]
          Length = 374

 Score =  270 bits (690), Expect = 9e-70
 Identities = 177/392 (45%), Positives = 204/392 (52%), Gaps = 34/392 (8%)
 Frame = +3

Query: 201  MSGSEAGIM-SGRESSYGIQKHQPVSTGTPNMRLGFSSDGTAVYKPILTTATTSPTYQQP 377
            MSGSE G+M S     +G+   QPV     NMRL F +DG++VYKP +TTAT SP+YQ  
Sbjct: 1    MSGSETGVMTSTTREPFGVVSPQPV---IQNMRLAFGADGSSVYKP-MTTATNSPSYQP- 55

Query: 378  ITAENAVATTVIPQGISTSINIG-----EQMXXXXXXXXXXXXDGTMXXXXXXXXXXXXX 542
              + +A +     +G S  IN+      + M            DGTM             
Sbjct: 56   --SPSAASPGGFVEGGSLGINVNMGSGNDAMKRKRGRPRKYGPDGTMALALVSAPQSVGI 113

Query: 543  XXXXXXXXQQNVQPSGGFXXXXXXXXXXXXM---------------------------KK 641
                        QP+GG             +                           KK
Sbjct: 114  -----------TQPAGGGGFSTPTSAAATSVGPSTTTIAANPSLPSGSGGGSVSPTGIKK 162

Query: 642  SRGRPPGSGKKQQIAALGSAGIGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGA 821
             RGRPPGS KKQQ+ ALGSAG GFTPH+ITVKAGEDVSSKIMSFSQHGPRAVCILSANGA
Sbjct: 163  GRGRPPGSNKKQQLEALGSAGFGFTPHIITVKAGEDVSSKIMSFSQHGPRAVCILSANGA 222

Query: 822  ISNVTLRQAATSGGTVTYEGRFEIXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXX 1001
            ISNVTLRQ ATSGG+VTYEGRFEI              QRSRTGGLSVS           
Sbjct: 223  ISNVTLRQPATSGGSVTYEGRFEILSLSGSFLPSENGGQRSRTGGLSVSLSGPDGRVLGG 282

Query: 1002 XXXXXXXXXSPVQVVVGSFIADGRKDLK-PNHSEPAAAPAKLXXXXXXXXXXXXXXRGTL 1178
                     SPVQVVV SFI+D RK+LK PNH EP +A  +L              RGT 
Sbjct: 283  GVAGLLLAASPVQVVVASFISDDRKELKSPNHLEPLSAMNRLTPVMGTTGPSSPPSRGTF 342

Query: 1179 SEXXXXXXXXLNHSTGACNNSNAQGMANVPWK 1274
            SE        LN STGACNNSN QG++++PWK
Sbjct: 343  SESSGGPGSPLNQSTGACNNSNLQGISSMPWK 374


>ref|XP_002307818.1| predicted protein [Populus trichocarpa] gi|222857267|gb|EEE94814.1|
            predicted protein [Populus trichocarpa]
          Length = 272

 Score =  245 bits (625), Expect = 3e-62
 Identities = 131/215 (60%), Positives = 148/215 (68%), Gaps = 1/215 (0%)
 Frame = +3

Query: 633  MKKSRGRPPGSGKKQQIAALGSAGIGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSA 812
            +KK+RGRPPGS KKQQ+ ALGSAG GFTPHVITVKAGED+SSK+MSFSQHGPRAVCILSA
Sbjct: 58   VKKARGRPPGSSKKQQLNALGSAGFGFTPHVITVKAGEDISSKVMSFSQHGPRAVCILSA 117

Query: 813  NGAISNVTLRQAATSGGTVTYEGRFEIXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXX 992
            NGAISNVTLRQ ATSGGTVTYEGRFEI              QRSR+GGLSV         
Sbjct: 118  NGAISNVTLRQQATSGGTVTYEGRFEILALSGSYLPSENGGQRSRSGGLSVCLSGPDGRV 177

Query: 993  XXXXXXXXXXXXSPVQVVVGSFIADGRKDLK-PNHSEPAAAPAKLXXXXXXXXXXXXXXR 1169
                        +PVQVVVGSFIADGRK+ K  NH+EP++A ++L              R
Sbjct: 178  LGGTVAGLLVAAAPVQVVVGSFIADGRKESKTANHTEPSSATSRLPPRGGSTGVSSPPSR 237

Query: 1170 GTLSEXXXXXXXXLNHSTGACNNSNAQGMANVPWK 1274
            GTLSE        LN STGACNNSN QGM+++PW+
Sbjct: 238  GTLSESSGGPGSPLNQSTGACNNSNPQGMSSMPWE 272


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