BLASTX nr result
ID: Coptis24_contig00010848
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00010848
(305 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containi... 155 4e-36
ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago t... 150 8e-35
ref|XP_002510888.1| pentatricopeptide repeat-containing protein,... 135 3e-30
ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi... 124 6e-27
emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera] 124 6e-27
>ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 155 bits (391), Expect = 4e-36
Identities = 73/101 (72%), Positives = 85/101 (84%)
Frame = +1
Query: 1 IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180
I TALV+MYGKCG V++A E+F+E+ KD AWT MISVFALHGLG +AF F EM+ G
Sbjct: 298 IGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAG 357
Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303
KPNHVTFVGLLSACAHSGLVE+GRWCF+ MK+VYSI+PQV
Sbjct: 358 VKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQV 398
Score = 60.1 bits (144), Expect = 2e-07
Identities = 24/84 (28%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Frame = +1
Query: 37 GCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG---TKPNHVTFV 207
G ++ A+++F++++ ++++ W ++I+ A G +E+ ELF EM++ KP+ +T
Sbjct: 206 GGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIA 265
Query: 208 GLLSACAHSGLVEKGRWCFNKMKQ 279
+LSACA G ++ G+W +++
Sbjct: 266 SVLSACAQLGAIDHGKWVHGYLRR 289
>ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 541
Score = 150 bits (380), Expect = 8e-35
Identities = 69/101 (68%), Positives = 86/101 (85%)
Frame = +1
Query: 1 IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180
I TALV+MYGKCG V++A+E+F ++ KD AWTAMISVFALHG G++AF+ F EM+ G
Sbjct: 302 IGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAG 361
Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303
KPNHVTFVGLLSAC+HSGLVE+GR CF+ MK+VYSI+PQ+
Sbjct: 362 VKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQI 402
Score = 57.0 bits (136), Expect = 2e-06
Identities = 26/87 (29%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Frame = +1
Query: 10 ALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG--- 180
++V Y + G VE A+ +F++++ ++++ W ++I+ G +E+ E+F EM+
Sbjct: 200 SMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDD 259
Query: 181 -TKPNHVTFVGLLSACAHSGLVEKGRW 258
KP+ +T +LSACA G ++ G+W
Sbjct: 260 VVKPDKITIASVLSACALLGSIDHGKW 286
>ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223550003|gb|EEF51490.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 554
Score = 135 bits (341), Expect = 3e-30
Identities = 64/85 (75%), Positives = 73/85 (85%)
Frame = +1
Query: 1 IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180
I TALVDMYGKCGC++RA EVF+E+ KD LAWTAMISVFAL+G G+EAF++F EM+ G
Sbjct: 286 IGTALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEAGG 345
Query: 181 TKPNHVTFVGLLSACAHSGLVEKGR 255
KPN VTFVGLLSACAHSGLVE GR
Sbjct: 346 VKPNLVTFVGLLSACAHSGLVETGR 370
Score = 57.0 bits (136), Expect = 2e-06
Identities = 26/94 (27%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Frame = +1
Query: 25 YGKCGCVERAVEVFKELD-NKDVLAWTAMISVFALHGLGREAFELFEEMKM--------Q 177
Y + G +++++ +F+++ N++V+ W ++I+ F G +EA E F EM+
Sbjct: 184 YLRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEFFHEMQCLRDDDGINN 243
Query: 178 GTKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQ 279
+P+ +T +LSACAH G ++ G+W + +++
Sbjct: 244 KVRPDKITIASVLSACAHLGAIDHGKWVHSYLRR 277
>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 124 bits (312), Expect = 6e-27
Identities = 56/101 (55%), Positives = 72/101 (71%)
Frame = +1
Query: 1 IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180
+ AL+DMY KCG +E+A+EVFK +++K V+ WT+MI ALHGLGREA E+F M+
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367
Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303
KPN +TFV +LSAC H GLVE GRW F M Y IKP++
Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408
Score = 67.4 bits (163), Expect = 1e-09
Identities = 30/86 (34%), Positives = 51/86 (59%)
Frame = +1
Query: 10 ALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQGTKP 189
A+V Y K G V+ A +F+ + ++V++WTA+I+ +A EA +F M+++ +P
Sbjct: 210 AMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEP 269
Query: 190 NHVTFVGLLSACAHSGLVEKGRWCFN 267
+ + + LSACAH G +E G W N
Sbjct: 270 DEIAMLAALSACAHLGALELGEWIHN 295
>emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 124 bits (312), Expect = 6e-27
Identities = 56/101 (55%), Positives = 72/101 (71%)
Frame = +1
Query: 1 IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180
+ AL+DMY KCG +E+A+EVFK +++K V+ WT+MI ALHGLGREA E+F M+
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367
Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303
KPN +TFV +LSAC H GLVE GRW F M Y IKP++
Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408
Score = 67.4 bits (163), Expect = 1e-09
Identities = 30/86 (34%), Positives = 51/86 (59%)
Frame = +1
Query: 10 ALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQGTKP 189
A+V Y K G V+ A +F+ + ++V++WTA+I+ +A EA +F M+++ +P
Sbjct: 210 AMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEP 269
Query: 190 NHVTFVGLLSACAHSGLVEKGRWCFN 267
+ + + LSACAH G +E G W N
Sbjct: 270 DEIAMLAALSACAHLGALELGEWIHN 295