BLASTX nr result
ID: Coptis24_contig00010848
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00010848 (305 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containi... 155 4e-36 ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago t... 150 8e-35 ref|XP_002510888.1| pentatricopeptide repeat-containing protein,... 135 3e-30 ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi... 124 6e-27 emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera] 124 6e-27 >ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Glycine max] Length = 540 Score = 155 bits (391), Expect = 4e-36 Identities = 73/101 (72%), Positives = 85/101 (84%) Frame = +1 Query: 1 IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180 I TALV+MYGKCG V++A E+F+E+ KD AWT MISVFALHGLG +AF F EM+ G Sbjct: 298 IGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAG 357 Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303 KPNHVTFVGLLSACAHSGLVE+GRWCF+ MK+VYSI+PQV Sbjct: 358 VKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQV 398 Score = 60.1 bits (144), Expect = 2e-07 Identities = 24/84 (28%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Frame = +1 Query: 37 GCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG---TKPNHVTFV 207 G ++ A+++F++++ ++++ W ++I+ A G +E+ ELF EM++ KP+ +T Sbjct: 206 GGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIA 265 Query: 208 GLLSACAHSGLVEKGRWCFNKMKQ 279 +LSACA G ++ G+W +++ Sbjct: 266 SVLSACAQLGAIDHGKWVHGYLRR 289 >ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula] Length = 541 Score = 150 bits (380), Expect = 8e-35 Identities = 69/101 (68%), Positives = 86/101 (85%) Frame = +1 Query: 1 IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180 I TALV+MYGKCG V++A+E+F ++ KD AWTAMISVFALHG G++AF+ F EM+ G Sbjct: 302 IGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAG 361 Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303 KPNHVTFVGLLSAC+HSGLVE+GR CF+ MK+VYSI+PQ+ Sbjct: 362 VKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQI 402 Score = 57.0 bits (136), Expect = 2e-06 Identities = 26/87 (29%), Positives = 52/87 (59%), Gaps = 4/87 (4%) Frame = +1 Query: 10 ALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG--- 180 ++V Y + G VE A+ +F++++ ++++ W ++I+ G +E+ E+F EM+ Sbjct: 200 SMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDD 259 Query: 181 -TKPNHVTFVGLLSACAHSGLVEKGRW 258 KP+ +T +LSACA G ++ G+W Sbjct: 260 VVKPDKITIASVLSACALLGSIDHGKW 286 >ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 554 Score = 135 bits (341), Expect = 3e-30 Identities = 64/85 (75%), Positives = 73/85 (85%) Frame = +1 Query: 1 IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180 I TALVDMYGKCGC++RA EVF+E+ KD LAWTAMISVFAL+G G+EAF++F EM+ G Sbjct: 286 IGTALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEAGG 345 Query: 181 TKPNHVTFVGLLSACAHSGLVEKGR 255 KPN VTFVGLLSACAHSGLVE GR Sbjct: 346 VKPNLVTFVGLLSACAHSGLVETGR 370 Score = 57.0 bits (136), Expect = 2e-06 Identities = 26/94 (27%), Positives = 55/94 (58%), Gaps = 9/94 (9%) Frame = +1 Query: 25 YGKCGCVERAVEVFKELD-NKDVLAWTAMISVFALHGLGREAFELFEEMKM--------Q 177 Y + G +++++ +F+++ N++V+ W ++I+ F G +EA E F EM+ Sbjct: 184 YLRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEFFHEMQCLRDDDGINN 243 Query: 178 GTKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQ 279 +P+ +T +LSACAH G ++ G+W + +++ Sbjct: 244 KVRPDKITIASVLSACAHLGAIDHGKWVHSYLRR 277 >ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310 [Vitis vinifera] Length = 576 Score = 124 bits (312), Expect = 6e-27 Identities = 56/101 (55%), Positives = 72/101 (71%) Frame = +1 Query: 1 IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180 + AL+DMY KCG +E+A+EVFK +++K V+ WT+MI ALHGLGREA E+F M+ Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367 Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303 KPN +TFV +LSAC H GLVE GRW F M Y IKP++ Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408 Score = 67.4 bits (163), Expect = 1e-09 Identities = 30/86 (34%), Positives = 51/86 (59%) Frame = +1 Query: 10 ALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQGTKP 189 A+V Y K G V+ A +F+ + ++V++WTA+I+ +A EA +F M+++ +P Sbjct: 210 AMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEP 269 Query: 190 NHVTFVGLLSACAHSGLVEKGRWCFN 267 + + + LSACAH G +E G W N Sbjct: 270 DEIAMLAALSACAHLGALELGEWIHN 295 >emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera] Length = 576 Score = 124 bits (312), Expect = 6e-27 Identities = 56/101 (55%), Positives = 72/101 (71%) Frame = +1 Query: 1 IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180 + AL+DMY KCG +E+A+EVFK +++K V+ WT+MI ALHGLGREA E+F M+ Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367 Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303 KPN +TFV +LSAC H GLVE GRW F M Y IKP++ Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408 Score = 67.4 bits (163), Expect = 1e-09 Identities = 30/86 (34%), Positives = 51/86 (59%) Frame = +1 Query: 10 ALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQGTKP 189 A+V Y K G V+ A +F+ + ++V++WTA+I+ +A EA +F M+++ +P Sbjct: 210 AMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEP 269 Query: 190 NHVTFVGLLSACAHSGLVEKGRWCFN 267 + + + LSACAH G +E G W N Sbjct: 270 DEIAMLAALSACAHLGALELGEWIHN 295