BLASTX nr result

ID: Coptis24_contig00010848 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010848
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containi...   155   4e-36
ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago t...   150   8e-35
ref|XP_002510888.1| pentatricopeptide repeat-containing protein,...   135   3e-30
ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi...   124   6e-27
emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]   124   6e-27

>ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  155 bits (391), Expect = 4e-36
 Identities = 73/101 (72%), Positives = 85/101 (84%)
 Frame = +1

Query: 1   IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180
           I TALV+MYGKCG V++A E+F+E+  KD  AWT MISVFALHGLG +AF  F EM+  G
Sbjct: 298 IGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAG 357

Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303
            KPNHVTFVGLLSACAHSGLVE+GRWCF+ MK+VYSI+PQV
Sbjct: 358 VKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQV 398



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 24/84 (28%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
 Frame = +1

Query: 37  GCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG---TKPNHVTFV 207
           G ++ A+++F++++ ++++ W ++I+  A  G  +E+ ELF EM++      KP+ +T  
Sbjct: 206 GGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIA 265

Query: 208 GLLSACAHSGLVEKGRWCFNKMKQ 279
            +LSACA  G ++ G+W    +++
Sbjct: 266 SVLSACAQLGAIDHGKWVHGYLRR 289


>ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355497290|gb|AES78493.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 541

 Score =  150 bits (380), Expect = 8e-35
 Identities = 69/101 (68%), Positives = 86/101 (85%)
 Frame = +1

Query: 1   IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180
           I TALV+MYGKCG V++A+E+F ++  KD  AWTAMISVFALHG G++AF+ F EM+  G
Sbjct: 302 IGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAG 361

Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303
            KPNHVTFVGLLSAC+HSGLVE+GR CF+ MK+VYSI+PQ+
Sbjct: 362 VKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQI 402



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/87 (29%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
 Frame = +1

Query: 10  ALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG--- 180
           ++V  Y + G VE A+ +F++++ ++++ W ++I+     G  +E+ E+F EM+      
Sbjct: 200 SMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDD 259

Query: 181 -TKPNHVTFVGLLSACAHSGLVEKGRW 258
             KP+ +T   +LSACA  G ++ G+W
Sbjct: 260 VVKPDKITIASVLSACALLGSIDHGKW 286


>ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550003|gb|EEF51490.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 554

 Score =  135 bits (341), Expect = 3e-30
 Identities = 64/85 (75%), Positives = 73/85 (85%)
 Frame = +1

Query: 1   IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180
           I TALVDMYGKCGC++RA EVF+E+  KD LAWTAMISVFAL+G G+EAF++F EM+  G
Sbjct: 286 IGTALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEAGG 345

Query: 181 TKPNHVTFVGLLSACAHSGLVEKGR 255
            KPN VTFVGLLSACAHSGLVE GR
Sbjct: 346 VKPNLVTFVGLLSACAHSGLVETGR 370



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/94 (27%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
 Frame = +1

Query: 25  YGKCGCVERAVEVFKELD-NKDVLAWTAMISVFALHGLGREAFELFEEMKM--------Q 177
           Y + G +++++ +F+++  N++V+ W ++I+ F   G  +EA E F EM+          
Sbjct: 184 YLRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEFFHEMQCLRDDDGINN 243

Query: 178 GTKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQ 279
             +P+ +T   +LSACAH G ++ G+W  + +++
Sbjct: 244 KVRPDKITIASVLSACAHLGAIDHGKWVHSYLRR 277


>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  124 bits (312), Expect = 6e-27
 Identities = 56/101 (55%), Positives = 72/101 (71%)
 Frame = +1

Query: 1   IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180
           +  AL+DMY KCG +E+A+EVFK +++K V+ WT+MI   ALHGLGREA E+F  M+   
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367

Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303
            KPN +TFV +LSAC H GLVE GRW F  M   Y IKP++
Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 30/86 (34%), Positives = 51/86 (59%)
 Frame = +1

Query: 10  ALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQGTKP 189
           A+V  Y K G V+ A  +F+ +  ++V++WTA+I+ +A      EA  +F  M+++  +P
Sbjct: 210 AMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEP 269

Query: 190 NHVTFVGLLSACAHSGLVEKGRWCFN 267
           + +  +  LSACAH G +E G W  N
Sbjct: 270 DEIAMLAALSACAHLGALELGEWIHN 295


>emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  124 bits (312), Expect = 6e-27
 Identities = 56/101 (55%), Positives = 72/101 (71%)
 Frame = +1

Query: 1   IKTALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQG 180
           +  AL+DMY KCG +E+A+EVFK +++K V+ WT+MI   ALHGLGREA E+F  M+   
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367

Query: 181 TKPNHVTFVGLLSACAHSGLVEKGRWCFNKMKQVYSIKPQV 303
            KPN +TFV +LSAC H GLVE GRW F  M   Y IKP++
Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 30/86 (34%), Positives = 51/86 (59%)
 Frame = +1

Query: 10  ALVDMYGKCGCVERAVEVFKELDNKDVLAWTAMISVFALHGLGREAFELFEEMKMQGTKP 189
           A+V  Y K G V+ A  +F+ +  ++V++WTA+I+ +A      EA  +F  M+++  +P
Sbjct: 210 AMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEP 269

Query: 190 NHVTFVGLLSACAHSGLVEKGRWCFN 267
           + +  +  LSACAH G +E G W  N
Sbjct: 270 DEIAMLAALSACAHLGALELGEWIHN 295


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