BLASTX nr result
ID: Coptis24_contig00010845
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00010845 (233 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containi... 89 3e-16 ref|XP_002328386.1| predicted protein [Populus trichocarpa] gi|2... 89 3e-16 ref|XP_002319049.1| predicted protein [Populus trichocarpa] gi|2... 87 1e-15 ref|XP_002328376.1| predicted protein [Populus trichocarpa] gi|2... 87 2e-15 ref|XP_002328377.1| predicted protein [Populus trichocarpa] gi|2... 85 5e-15 >ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Glycine max] Length = 477 Score = 89.4 bits (220), Expect = 3e-16 Identities = 40/76 (52%), Positives = 55/76 (72%) Frame = +3 Query: 6 CLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISP 185 CLCK RV DA +L+ EM+ KG+ P+ T+N+LI+G C + LK A SL +M ++I+P Sbjct: 242 CLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINP 301 Query: 186 NVVTFNILVDALGNEG 233 +V TFNIL+DALG EG Sbjct: 302 DVYTFNILIDALGKEG 317 Score = 66.2 bits (160), Expect = 3e-09 Identities = 31/77 (40%), Positives = 52/77 (67%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 D L K+ ++++A++LF+EM K + P+ +T+ SLI GLC L+ AI+L + M ++ I Sbjct: 311 DALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ 370 Query: 183 PNVVTFNILVDALGNEG 233 P+V ++ IL+DAL G Sbjct: 371 PDVYSYTILLDALCKGG 387 >ref|XP_002328386.1| predicted protein [Populus trichocarpa] gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa] Length = 617 Score = 89.4 bits (220), Expect = 3e-16 Identities = 40/77 (51%), Positives = 54/77 (70%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 D LCK VN+AV EMVD+G+ PD +T+N+++HG CS+ QL A LF++M R++ Sbjct: 244 DSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVM 303 Query: 183 PNVVTFNILVDALGNEG 233 P+ VTFNILVD L EG Sbjct: 304 PDTVTFNILVDGLCKEG 320 Score = 68.2 bits (165), Expect = 7e-10 Identities = 31/77 (40%), Positives = 51/77 (66%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 +CLC+ V+ AV++ +M G+ PDAITFN+LI+GLC+ ++K A+ LF +M Sbjct: 139 NCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHE 198 Query: 183 PNVVTFNILVDALGNEG 233 PNV+++N +++ L G Sbjct: 199 PNVISYNTVINGLCKNG 215 Score = 63.2 bits (152), Expect = 2e-08 Identities = 25/74 (33%), Positives = 48/74 (64%) Frame = +3 Query: 12 CKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPNV 191 CK R+N+A L EM +K + PD +T+++L+ GLC + + + A++LF++M + P++ Sbjct: 387 CKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDL 446 Query: 192 VTFNILVDALGNEG 233 + ++IL+D G Sbjct: 447 MAYSILLDGFCKHG 460 Score = 61.2 bits (147), Expect = 8e-08 Identities = 28/71 (39%), Positives = 45/71 (63%) Frame = +3 Query: 9 LCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPN 188 LC + ++ +AV LF EMV G P+ I++N++I+GLC A+ +F M + PN Sbjct: 176 LCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPN 235 Query: 189 VVTFNILVDAL 221 VVT+N ++D+L Sbjct: 236 VVTYNTIIDSL 246 Score = 60.8 bits (146), Expect = 1e-07 Identities = 27/68 (39%), Positives = 42/68 (61%) Frame = +3 Query: 12 CKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPNV 191 C ++N+A LF+EMV + V+PD +TFN L+ GLC + A + E M+++ PN Sbjct: 282 CSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNA 341 Query: 192 VTFNILVD 215 T+N L+D Sbjct: 342 YTYNALMD 349 Score = 59.3 bits (142), Expect = 3e-07 Identities = 25/68 (36%), Positives = 43/68 (63%) Frame = +3 Query: 9 LCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPN 188 LC+ R +A+NLF+EM G++PD + ++ L+ G C L A+ L ++M +R I PN Sbjct: 421 LCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPN 480 Query: 189 VVTFNILV 212 ++ + IL+ Sbjct: 481 IILYTILI 488 >ref|XP_002319049.1| predicted protein [Populus trichocarpa] gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa] Length = 585 Score = 87.4 bits (215), Expect = 1e-15 Identities = 39/77 (50%), Positives = 54/77 (70%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 D LCK R N+A+ F EMVD+G+ P+ +T++S++HG C++ QL A SLF+ M R++ Sbjct: 219 DSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVM 278 Query: 183 PNVVTFNILVDALGNEG 233 PN VTF ILVD L EG Sbjct: 279 PNTVTFTILVDGLCKEG 295 Score = 60.1 bits (144), Expect = 2e-07 Identities = 26/74 (35%), Positives = 45/74 (60%) Frame = +3 Query: 12 CKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPNV 191 CK R+N+A L EM D+ + PD +T+++L+ G C + + A LF++M + P+ Sbjct: 362 CKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDS 421 Query: 192 VTFNILVDALGNEG 233 +T++IL+D L G Sbjct: 422 ITYSILLDGLCKHG 435 Score = 59.7 bits (143), Expect = 2e-07 Identities = 26/71 (36%), Positives = 42/71 (59%) Frame = +3 Query: 9 LCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPN 188 LC + ++ DAV LF E+ G P IT+ ++I GLC I A+ L + M ++ P+ Sbjct: 151 LCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPD 210 Query: 189 VVTFNILVDAL 221 VV +N ++D+L Sbjct: 211 VVAYNTVIDSL 221 Score = 55.8 bits (133), Expect = 3e-06 Identities = 26/75 (34%), Positives = 43/75 (57%) Frame = +3 Query: 9 LCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPN 188 LCK +A+ L ++M +KG PD + +N++I LC R+ A+ F +M + I PN Sbjct: 186 LCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPN 245 Query: 189 VVTFNILVDALGNEG 233 VVT++ ++ N G Sbjct: 246 VVTYSSILHGFCNLG 260 Score = 55.5 bits (132), Expect = 5e-06 Identities = 25/77 (32%), Positives = 44/77 (57%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 D LCK +++A L + M + + P +N LI G+C+ +L+ A LF ++ + I Sbjct: 429 DGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQ 488 Query: 183 PNVVTFNILVDALGNEG 233 P+VVT+ +++ L EG Sbjct: 489 PSVVTYTVMISGLLKEG 505 Score = 55.1 bits (131), Expect = 6e-06 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = +3 Query: 12 CKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPNV 191 C+ R A LF+EM G++PD+IT++ L+ GLC L A L + M + I P++ Sbjct: 397 CQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHI 456 Query: 192 VTFNILVDALGNEG 233 +NIL+ + N G Sbjct: 457 CIYNILIQGMCNFG 470 Score = 54.7 bits (130), Expect = 8e-06 Identities = 26/71 (36%), Positives = 44/71 (61%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 D LCK+ + +A +F+ M + GV PDA T+++L+ G C Q+ A LF+ M + + Sbjct: 289 DGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFA 348 Query: 183 PNVVTFNILVD 215 P+V +NIL++ Sbjct: 349 PSVRVYNILIN 359 >ref|XP_002328376.1| predicted protein [Populus trichocarpa] gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa] Length = 599 Score = 86.7 bits (213), Expect = 2e-15 Identities = 39/77 (50%), Positives = 53/77 (68%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 D LCK VNDA++L EMVD+G+ PD +T+++++HG CS+ L A LF +M R++ Sbjct: 240 DSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVM 299 Query: 183 PNVVTFNILVDALGNEG 233 PN VTF ILVD L EG Sbjct: 300 PNTVTFTILVDGLCKEG 316 Score = 63.9 bits (154), Expect = 1e-08 Identities = 27/71 (38%), Positives = 47/71 (66%) Frame = +3 Query: 9 LCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPN 188 LC+ R +A+NLF+EM G++PD +T+++L+ GLC L A+ L + M + I P+ Sbjct: 417 LCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPD 476 Query: 189 VVTFNILVDAL 221 +V +NIL++ + Sbjct: 477 IVLYNILIEGM 487 Score = 63.5 bits (153), Expect = 2e-08 Identities = 28/77 (36%), Positives = 50/77 (64%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 +CLC+ V A+++ +M G+ PDAITFN+LI+G C ++K A+ LF +M +R Sbjct: 135 NCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQ 194 Query: 183 PNVVTFNILVDALGNEG 233 P+V++++ +++ L G Sbjct: 195 PDVISYSTVINGLCKSG 211 Score = 61.6 bits (148), Expect = 6e-08 Identities = 25/74 (33%), Positives = 51/74 (68%) Frame = +3 Query: 12 CKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPNV 191 CK+ R+++A +L EM +K + PD +T+++L+ GLC + + + A++LF++M + P++ Sbjct: 383 CKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDL 442 Query: 192 VTFNILVDALGNEG 233 +T++ L+D L G Sbjct: 443 MTYSTLLDGLCKHG 456 Score = 58.9 bits (141), Expect = 4e-07 Identities = 27/68 (39%), Positives = 40/68 (58%) Frame = +3 Query: 12 CKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPNV 191 C +N+A LF EMV + V+P+ +TF L+ GLC + A +FE M+K+ PN Sbjct: 278 CSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNA 337 Query: 192 VTFNILVD 215 T+N L+D Sbjct: 338 YTYNALMD 345 Score = 56.6 bits (135), Expect = 2e-06 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = +3 Query: 12 CKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPNV 191 C + + +AV LF EMV +G PD I+++++I+GLC A+ L M ++ PN+ Sbjct: 173 CIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNL 232 Query: 192 VTFNILVDAL 221 V + ++D+L Sbjct: 233 VAYTTIIDSL 242 >ref|XP_002328377.1| predicted protein [Populus trichocarpa] gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa] Length = 688 Score = 85.1 bits (209), Expect = 5e-15 Identities = 37/77 (48%), Positives = 55/77 (71%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 D LCK VNDA+ EMVD+G+ P+A+T+++++HG C++ QL A LF++M R++ Sbjct: 381 DSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVM 440 Query: 183 PNVVTFNILVDALGNEG 233 PN +TF+ILVD L EG Sbjct: 441 PNTLTFSILVDGLCQEG 457 Score = 84.0 bits (206), Expect = 1e-14 Identities = 37/73 (50%), Positives = 52/73 (71%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 D LCK VNDA++ EMV +G+ PDAIT+NS++HGLC + QL A LF+ M + Sbjct: 241 DSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCK 300 Query: 183 PNVVTFNILVDAL 221 P+VVT+NI++D+L Sbjct: 301 PDVVTYNIIIDSL 313 Score = 74.7 bits (182), Expect = 7e-12 Identities = 32/73 (43%), Positives = 49/73 (67%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 D L K VNDA + EMVD+G+ PD +T+ +++HGLC + QL AI LF+ M ++ Sbjct: 311 DSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCK 370 Query: 183 PNVVTFNILVDAL 221 P+VV +N ++D+L Sbjct: 371 PDVVAYNTIIDSL 383 Score = 65.5 bits (158), Expect = 4e-09 Identities = 28/77 (36%), Positives = 52/77 (67%) Frame = +3 Query: 3 DCLCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSIS 182 +CLC+ V+ AV+++ +M G+ PD ITF +LI+G+C+ ++K A+ L+ +M + Sbjct: 136 NCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHE 195 Query: 183 PNVVTFNILVDALGNEG 233 P+V+++N L++ L N G Sbjct: 196 PDVISYNTLINGLCNSG 212 Score = 64.7 bits (156), Expect = 8e-09 Identities = 28/71 (39%), Positives = 46/71 (64%) Frame = +3 Query: 9 LCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPN 188 +C + ++ AV L+ EMV G PD I++N+LI+GLC+ A+ +F+ M + PN Sbjct: 173 VCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPN 232 Query: 189 VVTFNILVDAL 221 VVT+N ++D+L Sbjct: 233 VVTYNTIIDSL 243 Score = 58.5 bits (140), Expect = 5e-07 Identities = 26/75 (34%), Positives = 43/75 (57%) Frame = +3 Query: 9 LCKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPN 188 LC ++N+A+ LF++M KG PD + +N++I LC R + A+ +M R I PN Sbjct: 348 LCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPN 407 Query: 189 VVTFNILVDALGNEG 233 VT++ ++ N G Sbjct: 408 AVTYSTILHGFCNLG 422 Score = 58.2 bits (139), Expect = 7e-07 Identities = 26/70 (37%), Positives = 45/70 (64%) Frame = +3 Query: 12 CKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPNV 191 C + ++N+A +F+ MV KG PD ++N LI+G C+ R++ A +L MS + ++PN Sbjct: 489 CLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNT 548 Query: 192 VTFNILVDAL 221 VT+N ++ L Sbjct: 549 VTYNTIMKGL 558 Score = 57.8 bits (138), Expect = 9e-07 Identities = 24/68 (35%), Positives = 45/68 (66%) Frame = +3 Query: 12 CKQYRVNDAVNLFQEMVDKGVVPDAITFNSLIHGLCSIRQLKGAISLFEDMSKRSISPNV 191 C ++++A LF+EMV + V+P+ +TF+ L+ GLC + A +FE M+++ + PN+ Sbjct: 419 CNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNI 478 Query: 192 VTFNILVD 215 T+N L++ Sbjct: 479 YTYNALMN 486