BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010810
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEI98626.1| hypothetical protein 111O18.13 [Coffea canephora]      189   3e-46
ref|XP_002867001.1| transcription factor IIB family protein [Ara...   183   1e-44
ref|NP_001078502.4| transcription initiation factor TFIIB [Arabi...   181   4e-44
ref|NP_195383.1| transcription initiation factor TFIIB [Arabidop...   181   4e-44
ref|XP_003611972.1| Transcription initiation factor IIB [Medicag...   177   6e-43

>gb|AEI98626.1| hypothetical protein 111O18.13 [Coffea canephora]
          Length = 526

 Score =  189 bits (479), Expect = 3e-46
 Identities = 93/160 (58%), Positives = 119/160 (74%), Gaps = 10/160 (6%)
 Frame = +2

Query: 23  IKCPYCSSTQGRCSSTQSNQSITECTSCGRVIEERQTQPNELFLLRAQDTPLCVVTSDLA 202
           ++CPYCS+ QGRC++T S +SITECTSCGRV+EERQ+Q + LF +RAQD+PLC+VTSDL 
Sbjct: 1   MRCPYCSAAQGRCTTTSSGRSITECTSCGRVVEERQSQSHHLFHIRAQDSPLCLVTSDLP 60

Query: 203 XXXXXXXXXXNPQTDSDSEDPFESTGFISTFSTWSLEPTPLIARTSFSYSGMLAELER-- 376
                     NP ++SD +DPFE TGFI+ FSTWSLEP PL A++S S++G LAELER  
Sbjct: 61  TLPVPATTDSNPTSNSDDDDPFEPTGFITAFSTWSLEPYPLFAQSSISFAGHLAELERVL 120

Query: 377 --------CCSITDTSATGGVVAVDNLRAYLQIIDVSSIL 472
                   C S + ++++G  V VDNLRAYLQIIDV+SIL
Sbjct: 121 ETTSSSSSCSSSSGSNSSGPSVVVDNLRAYLQIIDVASIL 160


>ref|XP_002867001.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297312837|gb|EFH43260.1| transcription factor
           IIB family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 506

 Score =  183 bits (464), Expect = 1e-44
 Identities = 94/152 (61%), Positives = 115/152 (75%), Gaps = 2/152 (1%)
 Frame = +2

Query: 23  IKCPYCSSTQGRCSSTQSNQSITECTSCGRVIEERQTQPNELFLLRAQDTPLCVVTSDLA 202
           +KCPYCSSTQGRC++T S +SITEC+SCGRV+EERQTQ + LF LRAQDTPLC+VTSDL 
Sbjct: 1   MKCPYCSSTQGRCATTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDL- 59

Query: 203 XXXXXXXXXXNPQTDSDSEDPFESTGFISTFSTWSLEPTPLIARTSFSYSGMLAELERCC 382
                      P  + D EDPFE TGFI+ FSTWSLEP+P+ AR+S S+SG LAELER  
Sbjct: 60  ------QTATQPSLE-DEEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTL 112

Query: 383 SI--TDTSATGGVVAVDNLRAYLQIIDVSSIL 472
            +  + +++    V VDNLRAY+QIIDV+SIL
Sbjct: 113 ELASSTSNSNSSTVVVDNLRAYMQIIDVASIL 144


>ref|NP_001078502.4| transcription initiation factor TFIIB [Arabidopsis thaliana]
           gi|332661283|gb|AEE86683.1| transcription initiation
           factor TFIIB [Arabidopsis thaliana]
          Length = 369

 Score =  181 bits (460), Expect = 4e-44
 Identities = 92/152 (60%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
 Frame = +2

Query: 23  IKCPYCSSTQGRCSSTQSNQSITECTSCGRVIEERQTQPNELFLLRAQDTPLCVVTSDLA 202
           +KCPYCSS QGRC++T S +SITEC+SCGRV+EERQTQ + LF LRAQDTPLC+VTSDL 
Sbjct: 1   MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60

Query: 203 XXXXXXXXXXNPQTDSDSEDPFESTGFISTFSTWSLEPTPLIARTSFSYSGMLAELERCC 382
                        +  D EDPFE TGFI+ FSTWSLEP+P+ AR+S S+SG LAELER  
Sbjct: 61  TAA--------QPSPEDEEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTL 112

Query: 383 SI--TDTSATGGVVAVDNLRAYLQIIDVSSIL 472
            +  + +++    V VDNLRAY+QIIDV+SIL
Sbjct: 113 ELASSTSNSNSSTVVVDNLRAYMQIIDVASIL 144


>ref|NP_195383.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
           gi|2464915|emb|CAB16810.1| transcription initiation
           factor like protein [Arabidopsis thaliana]
           gi|7270613|emb|CAB80331.1| transcription initiation
           factor like protein [Arabidopsis thaliana]
           gi|16509378|emb|CAC82714.1| TFIIB-related protein
           [Arabidopsis thaliana] gi|30102720|gb|AAP21278.1|
           At4g37010 [Arabidopsis thaliana]
           gi|39545884|gb|AAR28005.1| TFIIB5/pBrp [Arabidopsis
           thaliana] gi|332661282|gb|AEE86682.1| transcription
           initiation factor TFIIB [Arabidopsis thaliana]
          Length = 503

 Score =  181 bits (460), Expect = 4e-44
 Identities = 92/152 (60%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
 Frame = +2

Query: 23  IKCPYCSSTQGRCSSTQSNQSITECTSCGRVIEERQTQPNELFLLRAQDTPLCVVTSDLA 202
           +KCPYCSS QGRC++T S +SITEC+SCGRV+EERQTQ + LF LRAQDTPLC+VTSDL 
Sbjct: 1   MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60

Query: 203 XXXXXXXXXXNPQTDSDSEDPFESTGFISTFSTWSLEPTPLIARTSFSYSGMLAELERCC 382
                        +  D EDPFE TGFI+ FSTWSLEP+P+ AR+S S+SG LAELER  
Sbjct: 61  TAA--------QPSPEDEEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTL 112

Query: 383 SI--TDTSATGGVVAVDNLRAYLQIIDVSSIL 472
            +  + +++    V VDNLRAY+QIIDV+SIL
Sbjct: 113 ELASSTSNSNSSTVVVDNLRAYMQIIDVASIL 144


>ref|XP_003611972.1| Transcription initiation factor IIB [Medicago truncatula]
           gi|358344389|ref|XP_003636272.1| Transcription
           initiation factor IIB [Medicago truncatula]
           gi|355502207|gb|AES83410.1| Transcription initiation
           factor IIB [Medicago truncatula]
           gi|355513307|gb|AES94930.1| Transcription initiation
           factor IIB [Medicago truncatula]
           gi|388496684|gb|AFK36408.1| unknown [Medicago
           truncatula]
          Length = 487

 Score =  177 bits (450), Expect = 6e-43
 Identities = 91/153 (59%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
 Frame = +2

Query: 23  IKCPYCSSTQGRCSSTQSNQSITECTSCGRVIEERQTQPNELFLLRAQDTPLCVVTSDLA 202
           +KCPYCS+ QGRC++T + +SITECTSCGRV+EERQ+ P+ +F LRAQD PLC+VT DL 
Sbjct: 1   MKCPYCSAAQGRCTTTTTGKSITECTSCGRVVEERQSHPHHIFHLRAQDNPLCLVTPDLP 60

Query: 203 XXXXXXXXXXNPQTDSDS---EDPFESTGFISTFSTWSLEPTPLIARTSFSYSGMLAELE 373
                       QT++D+   EDPFE TGFI+ FSTWSLEP+PL  ++S S+SG LAELE
Sbjct: 61  PPTLN-------QTNTDTNEEEDPFEPTGFITAFSTWSLEPSPLYLQSSLSFSGYLAELE 113

Query: 374 RCCSITDTSATGGVVAVDNLRAYLQIIDVSSIL 472
           R    + T+++  VV VDNLRAY+QIIDVSSIL
Sbjct: 114 RTLESSSTNSSSSVV-VDNLRAYMQIIDVSSIL 145