BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010768
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi...   150   1e-34
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
ref|XP_002528356.1| pentatricopeptide repeat-containing protein,...   130   8e-29
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi...   124   8e-27
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25

>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score =  150 bits (378), Expect = 1e-34
 Identities = 80/114 (70%), Positives = 93/114 (81%), Gaps = 2/114 (1%)
 Frame = -3

Query: 336 DLSLINNLLTSYSKSNLLSVALRLFRQ-IPSPNVVTWTALISS-TNTVFSFHHYISMLRY 163
           D S  N+L+T YSKSNLLS A+R+F   IPSPNVV+WTALIS+  +T F+  H+ISMLR+
Sbjct: 46  DRSFYNSLITLYSKSNLLSKAVRIFHHHIPSPNVVSWTALISAYASTSFALLHFISMLRH 105

Query: 162 PKLPNERTLASLLKTCASLSSLTFGLQLHSFSLKLCLSHLPFTGSALVHFYSKC 1
           P LPN+RTLASLLKTCASL SL+FGLQLHS SLKL LS  PF  SALV+FYSKC
Sbjct: 106 PTLPNQRTLASLLKTCASLPSLSFGLQLHSLSLKLSLSAQPFVSSALVNFYSKC 159


>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
           gi|449487598|ref|XP_004157706.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score =  136 bits (342), Expect = 2e-30
 Identities = 66/108 (61%), Positives = 84/108 (77%), Gaps = 1/108 (0%)
 Frame = -3

Query: 321 NNLLTSYSKSNLLSVALRLFRQIPSPNVVTWTALISSTNTVF-SFHHYISMLRYPKLPNE 145
           NNL+T YSK+NLL  + RLF QIP P++V+WTALIS+ ++ F S  H++SMLRYP  PNE
Sbjct: 48  NNLITRYSKANLLHYSARLFNQIPFPDIVSWTALISAHSSTFLSLRHFVSMLRYPTFPNE 107

Query: 144 RTLASLLKTCASLSSLTFGLQLHSFSLKLCLSHLPFTGSALVHFYSKC 1
           RTLA L KTCASL  ++FG  LHS + KL L + P++GSALV+FYSKC
Sbjct: 108 RTLAPLFKTCASLPCVSFGFALHSLAYKLSLCNGPYSGSALVNFYSKC 155


>ref|XP_002528356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532224|gb|EEF34028.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 356

 Score =  130 bits (328), Expect = 8e-29
 Identities = 67/116 (57%), Positives = 88/116 (75%), Gaps = 4/116 (3%)
 Frame = -3

Query: 336 DLSLINNLLTSYSKSN---LLSVALRLFRQIPSPNVVTWTALISS-TNTVFSFHHYISML 169
           +LS  N+L+T YS+S    + S A RLF  +PSPN+V+WT+LIS+ T++  S HH++SML
Sbjct: 25  NLSCFNHLITLYSRSPNFLVFSYANRLFSLLPSPNIVSWTSLISAHTHSFLSLHHFLSML 84

Query: 168 RYPKLPNERTLASLLKTCASLSSLTFGLQLHSFSLKLCLSHLPFTGSALVHFYSKC 1
           R P LPN+RTLASL K C +LS+L+FG  LHS +LKL L   PF+GSALV+FYSKC
Sbjct: 85  RRPILPNQRTLASLFKACTNLSALSFGFSLHSMALKLSLDTQPFSGSALVNFYSKC 140


>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  124 bits (311), Expect = 8e-27
 Identities = 63/114 (55%), Positives = 87/114 (76%), Gaps = 2/114 (1%)
 Frame = -3

Query: 339 KDLSLINNLLTSYSKSNLLSVALRLFRQIP-SPNVVTWTALISS-TNTVFSFHHYISMLR 166
           KD ++ NNL+T YSKSNL S A+ LF ++P  PNVV+WTALIS+ +NT+ S  H+++MLR
Sbjct: 32  KDRAVWNNLITHYSKSNLSSYAVSLFHRLPFPPNVVSWTALISAHSNTLLSLRHFLAMLR 91

Query: 165 YPKLPNERTLASLLKTCASLSSLTFGLQLHSFSLKLCLSHLPFTGSALVHFYSK 4
           +  LPN RTLASL  TCA+L++++F L LHS +LKL L+H PF  S+L+  Y+K
Sbjct: 92  HNTLPNHRTLASLFATCAALTAVSFALSLHSLALKLALAHHPFPASSLLSVYAK 145


>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  120 bits (300), Expect = 1e-25
 Identities = 61/115 (53%), Positives = 88/115 (76%), Gaps = 2/115 (1%)
 Frame = -3

Query: 342 MKDLSLINNLLTSYSKSNLLSVALRLFRQIP-SPNVVTWTALISS-TNTVFSFHHYISML 169
           +KD ++ NNL+T YSKS+L S A+ LF+++P  PNVV+WTALIS+ +NT+ S  H+++ML
Sbjct: 31  IKDRAVWNNLITHYSKSDLSSYAVSLFQRLPFPPNVVSWTALISAHSNTLLSLRHFLAML 90

Query: 168 RYPKLPNERTLASLLKTCASLSSLTFGLQLHSFSLKLCLSHLPFTGSALVHFYSK 4
           R+  LPN RT+ASL  TCA+L++++F L LHS +LKL LS  PF  S+L+  Y+K
Sbjct: 91  RHNTLPNHRTVASLFTTCAALTAVSFALSLHSLALKLSLSQHPFPASSLLSLYAK 145