BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010767
         (397 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi...   125   3e-27
ref|XP_002528356.1| pentatricopeptide repeat-containing protein,...   101   7e-24
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi...   110   2e-22
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi...   103   6e-21
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi...   102   2e-20

>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score =  125 bits (315), Expect = 3e-27
 Identities = 71/108 (65%), Positives = 82/108 (75%), Gaps = 2/108 (1%)
 Frame = +2

Query: 2   HMQLIKNARKDLSLINNLITSYSKSNLLSDALHLLRQ-IPSPNVVTCTALISS-TNTVFS 175
           H Q IK+A  D S  N+LIT YSKSNLLS A+ +    IPSPNVV+ TALIS+  +T F+
Sbjct: 36  HAQAIKSAITDRSFYNSLITLYSKSNLLSKAVRIFHHHIPSPNVVSWTALISAYASTSFA 95

Query: 176 FHHYISMLRYPKLPNERTFASLLKTCASLSSLPFGLQLHSFSLKLCLS 319
             H+ISMLR+P LPN+RT ASLLKTCASL SL FGLQLHS SLKL LS
Sbjct: 96  LLHFISMLRHPTLPNQRTLASLLKTCASLPSLSFGLQLHSLSLKLSLS 143


>ref|XP_002528356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532224|gb|EEF34028.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 356

 Score =  101 bits (251), Expect(2) = 7e-24
 Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 4/109 (3%)
 Frame = +2

Query: 2   HMQLIKNARKDLSLINNLITSYSKSN---LLSDALHLLRQIPSPNVVTCTALISS-TNTV 169
           H Q IK+   +LS  N+LIT YS+S    + S A  L   +PSPN+V+ T+LIS+ T++ 
Sbjct: 15  HAQAIKSPYTNLSCFNHLITLYSRSPNFLVFSYANRLFSLLPSPNIVSWTSLISAHTHSF 74

Query: 170 FSFHHYISMLRYPKLPNERTFASLLKTCASLSSLPFGLQLHSFSLKLCL 316
            S HH++SMLR P LPN+RT ASL K C +LS+L FG  LHS +LKL L
Sbjct: 75  LSLHHFLSMLRRPILPNQRTLASLFKACTNLSALSFGFSLHSMALKLSL 123



 Score = 34.3 bits (77), Expect(2) = 7e-24
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +3

Query: 324 PFTGSALVHFYSKCRL 371
           PF+GSALV+FYSKCRL
Sbjct: 127 PFSGSALVNFYSKCRL 142


>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
           gi|449487598|ref|XP_004157706.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score =  110 bits (274), Expect = 2e-22
 Identities = 63/134 (47%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
 Frame = +2

Query: 2   HMQLIKNARKDLSLINNLITSYSKSNLLSDALHLLRQIPSPNVVTCTALISSTNTVF-SF 178
           H Q IK+   +  + NNLIT YSK+NLL  +  L  QIP P++V+ TALIS+ ++ F S 
Sbjct: 33  HAQAIKSPATECVVYNNLITRYSKANLLHYSARLFNQIPFPDIVSWTALISAHSSTFLSL 92

Query: 179 HHYISMLRYPKLPNERTFASLLKTCASLSSLPFGLQLHSFSLKLCL-SLTLHWFCFGSFL 355
            H++SMLRYP  PNERT A L KTCASL  + FG  LHS + KL L +         +F 
Sbjct: 93  RHFVSMLRYPTFPNERTLAPLFKTCASLPCVSFGFALHSLAYKLSLCNGPYSGSALVNFY 152

Query: 356 FKMPSFQDAVKAFN 397
            K   F DA K F+
Sbjct: 153 SKCRLFNDACKVFD 166


>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  103 bits (256), Expect(2) = 6e-21
 Identities = 56/108 (51%), Positives = 77/108 (71%), Gaps = 2/108 (1%)
 Frame = +2

Query: 2   HMQLIKNARKDLSLINNLITSYSKSNLLSDALHLLRQIP-SPNVVTCTALISS-TNTVFS 175
           H + I +  KD ++ NNLIT YSKSNL S A+ L  ++P  PNVV+ TALIS+ +NT+ S
Sbjct: 23  HARAITSHAKDRAVWNNLITHYSKSNLSSYAVSLFHRLPFPPNVVSWTALISAHSNTLLS 82

Query: 176 FHHYISMLRYPKLPNERTFASLLKTCASLSSLPFGLQLHSFSLKLCLS 319
             H+++MLR+  LPN RT ASL  TCA+L+++ F L LHS +LKL L+
Sbjct: 83  LRHFLAMLRHNTLPNHRTLASLFATCAALTAVSFALSLHSLALKLALA 130



 Score = 22.3 bits (46), Expect(2) = 6e-21
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 312 VSHLPFTGSALVHFYSKCRL 371
           ++H PF  S+L+  Y+K R+
Sbjct: 129 LAHHPFPASSLLSVYAKLRM 148


>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  102 bits (255), Expect(2) = 2e-20
 Identities = 57/108 (52%), Positives = 78/108 (72%), Gaps = 2/108 (1%)
 Frame = +2

Query: 2   HMQLIKNARKDLSLINNLITSYSKSNLLSDALHLLRQIP-SPNVVTCTALISS-TNTVFS 175
           H Q I +  KD ++ NNLIT YSKS+L S A+ L +++P  PNVV+ TALIS+ +NT+ S
Sbjct: 23  HAQAITSHIKDRAVWNNLITHYSKSDLSSYAVSLFQRLPFPPNVVSWTALISAHSNTLLS 82

Query: 176 FHHYISMLRYPKLPNERTFASLLKTCASLSSLPFGLQLHSFSLKLCLS 319
             H+++MLR+  LPN RT ASL  TCA+L+++ F L LHS +LKL LS
Sbjct: 83  LRHFLAMLRHNTLPNHRTVASLFTTCAALTAVSFALSLHSLALKLSLS 130



 Score = 20.8 bits (42), Expect(2) = 2e-20
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 312 VSHLPFTGSALVHFYSKCRL 371
           +S  PF  S+L+  Y+K R+
Sbjct: 129 LSQHPFPASSLLSLYAKLRM 148