BLASTX nr result
ID: Coptis24_contig00010762
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00010762 (477 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002310120.1| predicted protein [Populus trichocarpa] gi|2... 79 3e-13 gb|AFK41173.1| unknown [Lotus japonicus] 75 6e-12 ref|XP_002524917.1| exonuclease, putative [Ricinus communis] gi|... 74 1e-11 ref|XP_003550038.1| PREDICTED: small RNA degrading nuclease 3-li... 72 4e-11 ref|NP_201525.2| small RNA degrading nuclease 3 [Arabidopsis tha... 71 1e-10 >ref|XP_002310120.1| predicted protein [Populus trichocarpa] gi|222853023|gb|EEE90570.1| predicted protein [Populus trichocarpa] Length = 463 Score = 79.3 bits (194), Expect = 3e-13 Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 10/133 (7%) Frame = -3 Query: 475 DPQEADKAFQSIEKEEEKDSFGRPQKYVVFERSTGLHTTLFVRKMAPDGSTEQSTSKKRP 296 +P+EA +AF+++ EKD+ GRPQK V + TG + VRKM D Q KKR Sbjct: 323 NPEEACQAFENLIGSLEKDTSGRPQKLVALQLDTGGSAGIRVRKMTHDSHVSQ---KKRS 379 Query: 295 LE-ENKGDGSLVQCTPTKKRSAEVENR---------DECEHHIKEIERLKKELRQRDDEV 146 E E+ GD + + E+E ++C+ H+KEIERLK+E++ +D E+ Sbjct: 380 FEGEDSGDPKKPKIDQCEDHVKEIERLKQELKKQELNQCDDHLKEIERLKQEIKTKDFEI 439 Query: 145 ANLQKIITALTRK 107 KIIT L RK Sbjct: 440 TAQDKIITELKRK 452 >gb|AFK41173.1| unknown [Lotus japonicus] Length = 525 Score = 75.1 bits (183), Expect = 6e-12 Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 8/121 (6%) Frame = -3 Query: 469 QEADKAFQSIEKEEEKDSFGRPQKYVVFERSTGLHTTLFVRKMAPDGSTEQSTSKKRPLE 290 QEA +A+++++ + KDSFGRPQK V+F STG+ +LFVRKM D + KR L+ Sbjct: 372 QEAYEAYENVQGSQTKDSFGRPQKEVMFRPSTGMTVSLFVRKMTAD-EPDNLLQSKRALQ 430 Query: 289 ENKGDGSLVQCTPTKKRSAEVE--------NRDECEHHIKEIERLKKELRQRDDEVANLQ 134 ++ D V + K ++E D C H+KEIE L ++L+Q+D E+ +L+ Sbjct: 431 VDEAD-EAVNASKKAKTVPQIEEDVLIGSTKGDTCT-HLKEIEALNEQLKQKDLEIESLR 488 Query: 133 K 131 + Sbjct: 489 E 489 >ref|XP_002524917.1| exonuclease, putative [Ricinus communis] gi|223535752|gb|EEF37414.1| exonuclease, putative [Ricinus communis] Length = 504 Score = 73.9 bits (180), Expect = 1e-11 Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 6/130 (4%) Frame = -3 Query: 475 DPQEADKAFQSIEKEEEKDSFGRPQKYVVFERSTGLHTTLFVRKMAPDGSTEQSTSKKRP 296 DPQEA AF ++ EKD G QK + + TG L+VRKM D Q KKR Sbjct: 363 DPQEAHCAFDNLNGRLEKDKNGLLQKMITLKLKTGATANLYVRKMGHDHFIHQDLQKKRA 422 Query: 295 LE-ENKGDGSLVQCTPTKKRSAEVENRDECEHHIKEIERLKKELRQR-----DDEVANLQ 134 + E+ G+ TKK RD+C+ H+KEIERLK+EL+++ DD + ++ Sbjct: 423 FQGEDIGN--------TKKL-----KRDDCDDHVKEIERLKQELKEKDLSKCDDHMKEIE 469 Query: 133 KIITALTRKQ 104 K+ L+ K+ Sbjct: 470 KLKQNLSSKE 479 >ref|XP_003550038.1| PREDICTED: small RNA degrading nuclease 3-like [Glycine max] Length = 509 Score = 72.4 bits (176), Expect = 4e-11 Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 7/124 (5%) Frame = -3 Query: 472 PQEADKAFQSIEKEEEKDSFGRPQKYVVFERSTGLHTTLFVRKMAPDGSTEQSTSKKRPL 293 P EAD A+++++ + KD++G PQK V F STGL LFVRKM + +Q T KR L Sbjct: 368 PPEADGAYENVQGSQLKDTYGHPQKLVTFRLSTGLSVNLFVRKMVTEEPNDQ-TPSKRAL 426 Query: 292 EENKGDGSLVQCTPTKKRSAEVE-------NRDECEHHIKEIERLKKELRQRDDEVANLQ 134 + N+ V + K ++E + + + H KEIE L ++L+Q + + +L+ Sbjct: 427 QINEA----VDVSKKAKMDPKIEEDASAGFGKGDTDAHSKEIEALNQQLKQSEMVIESLR 482 Query: 133 KIIT 122 K +T Sbjct: 483 KQLT 486 >ref|NP_201525.2| small RNA degrading nuclease 3 [Arabidopsis thaliana] gi|75330762|sp|Q8RXK2.1|SDN3_ARATH RecName: Full=Small RNA degrading nuclease 3 gi|19423880|gb|AAL87318.1| unknown protein [Arabidopsis thaliana] gi|25055029|gb|AAN71976.1| unknown protein [Arabidopsis thaliana] gi|332010934|gb|AED98317.1| small RNA degrading nuclease 3 [Arabidopsis thaliana] Length = 782 Score = 70.9 bits (172), Expect = 1e-10 Identities = 43/122 (35%), Positives = 63/122 (51%) Frame = -3 Query: 472 PQEADKAFQSIEKEEEKDSFGRPQKYVVFERSTGLHTTLFVRKMAPDGSTEQSTSKKRPL 293 P+EA+KAF+ ++ E K+ G QK V F+ S+G L+VRKM D S E + Sbjct: 655 PEEANKAFEKVKGEAVKEKGGLAQKMVAFKLSSGSGACLYVRKMVQDESEETKEANANHC 714 Query: 292 EENKGDGSLVQCTPTKKRSAEVENRDECEHHIKEIERLKKELRQRDDEVANLQKIITALT 113 E D L + K++ +E CE H KEIE LK++L ++ ++ KII L Sbjct: 715 E----DDHLKEMEELKEKLKAMEFAISCEGHSKEIEELKQKLNAKEHQIQAQDKIIANLK 770 Query: 112 RK 107 K Sbjct: 771 MK 772 Score = 59.7 bits (143), Expect = 2e-07 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 1/103 (0%) Frame = -3 Query: 472 PQEADKAFQSIEKEEEKDSFGRPQKYVVFERSTGLHTTLFVRKMAPDGS-TEQSTSKKRP 296 P+EA++AF+++E + KD G PQK V + S+GL +LFVRKM D S E STS++ Sbjct: 377 PEEANEAFENVEGDVAKDKSGLPQKKAVLKLSSGLAVSLFVRKMVQDDSPCEISTSERAR 436 Query: 295 LEENKGDGSLVQCTPTKKRSAEVENRDECEHHIKEIERLKKEL 167 EEN +K++ E E + E + + E K +L Sbjct: 437 AEENN--------VSSKRQKTEDETEETKEATVNQREADKTKL 471 Score = 59.7 bits (143), Expect = 2e-07 Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 1/103 (0%) Frame = -3 Query: 472 PQEADKAFQSIEKEEEKDSFGRPQKYVVFERSTGLHTTLFVRKMAPDGST-EQSTSKKRP 296 P+EA++AF+++E + KD G PQK VVF+ S+G +L+VRKM D S E ST+K+ Sbjct: 516 PEEANEAFENVEGDVVKDKTGLPQKMVVFKLSSGSGVSLYVRKMVHDDSPGEISTTKRAR 575 Query: 295 LEENKGDGSLVQCTPTKKRSAEVENRDECEHHIKEIERLKKEL 167 EE+ +K++ E E+ + E + K+ E K +L Sbjct: 576 TEESN--------MSSKRQKTEDESEETKEANAKQREADKTKL 610