BLASTX nr result
ID: Coptis24_contig00010740
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00010740
(719 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-spl... 290 2e-76
ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho... 290 2e-76
ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho... 288 8e-76
ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho... 288 8e-76
ref|XP_002456069.1| hypothetical protein SORBIDRAFT_03g029810 [S... 283 3e-74
>ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22
homolog, partial [Cucumis sativus]
Length = 780
Score = 290 bits (742), Expect = 2e-76
Identities = 151/216 (69%), Positives = 172/216 (79%), Gaps = 5/216 (2%)
Frame = +1
Query: 85 GVYIPPFMLRKQDNNVSDYDKSSLAYQRLTWDALGKTINGLVNKVNATNIKNIVPELIQE 264
GVYIPPF L + V D KSS+ YQRLTWDAL K+INGLVNKVNATNIKNI+PEL E
Sbjct: 223 GVYIPPFKLARMMKEVQD--KSSIEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAE 280
Query: 265 NLIRGRGLFCRSIIKSQLASPRFTHVFSALVSVLNTKFPQXXXXXXXXXXXXXXXAYKRN 444
NLIRGRGLFCRS +KSQ+ASP FT VF+ALV+V+NTKFP+ AYKRN
Sbjct: 281 NLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAYKRN 340
Query: 445 DKPQLLAVTDFIAQLVNHEV-----ALELLTILLDDPSEDSVEVAVRFVTRCGSLLQDLS 609
DKPQLLA FIA LVN +V ALELLT+LL++P++DSVEVAV FVT CGS+L+DLS
Sbjct: 341 DKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTECGSILKDLS 400
Query: 610 PKALHGIFERFRGILHEGQINKRVQFLIEGLFALRK 717
PK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RK
Sbjct: 401 PKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRK 436
>ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Cucumis sativus]
Length = 797
Score = 290 bits (742), Expect = 2e-76
Identities = 151/216 (69%), Positives = 172/216 (79%), Gaps = 5/216 (2%)
Frame = +1
Query: 85 GVYIPPFMLRKQDNNVSDYDKSSLAYQRLTWDALGKTINGLVNKVNATNIKNIVPELIQE 264
GVYIPPF L + V D KSS+ YQRLTWDAL K+INGLVNKVNATNIKNI+PEL E
Sbjct: 223 GVYIPPFKLARMMKEVQD--KSSIEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAE 280
Query: 265 NLIRGRGLFCRSIIKSQLASPRFTHVFSALVSVLNTKFPQXXXXXXXXXXXXXXXAYKRN 444
NLIRGRGLFCRS +KSQ+ASP FT VF+ALV+V+NTKFP+ AYKRN
Sbjct: 281 NLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAYKRN 340
Query: 445 DKPQLLAVTDFIAQLVNHEV-----ALELLTILLDDPSEDSVEVAVRFVTRCGSLLQDLS 609
DKPQLLA FIA LVN +V ALELLT+LL++P++DSVEVAV FVT CGS+L+DLS
Sbjct: 341 DKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTECGSILKDLS 400
Query: 610 PKALHGIFERFRGILHEGQINKRVQFLIEGLFALRK 717
PK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RK
Sbjct: 401 PKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRK 436
>ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
Length = 860
Score = 288 bits (737), Expect = 8e-76
Identities = 150/216 (69%), Positives = 170/216 (78%), Gaps = 5/216 (2%)
Frame = +1
Query: 85 GVYIPPFMLRKQDNNVSDYDKSSLAYQRLTWDALGKTINGLVNKVNATNIKNIVPELIQE 264
GVYIPPF + V D KSS+ YQRLTWDAL K+INGLVNKVNATNIKNI+PEL E
Sbjct: 286 GVYIPPFKMAMMMKEVQD--KSSVEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAE 343
Query: 265 NLIRGRGLFCRSIIKSQLASPRFTHVFSALVSVLNTKFPQXXXXXXXXXXXXXXXAYKRN 444
NLIRGRGLFCRS +KSQ+ASP FT VF+ALV+V+NTKFP+ AYKRN
Sbjct: 344 NLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAYKRN 403
Query: 445 DKPQLLAVTDFIAQLVNHE-----VALELLTILLDDPSEDSVEVAVRFVTRCGSLLQDLS 609
DKPQLLA FIA LVN + +ALELLT+LL+ P++DSVEVAV FVT CGS+LQDLS
Sbjct: 404 DKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPTDDSVEVAVGFVTECGSILQDLS 463
Query: 610 PKALHGIFERFRGILHEGQINKRVQFLIEGLFALRK 717
PK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RK
Sbjct: 464 PKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRK 499
>ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
Length = 871
Score = 288 bits (737), Expect = 8e-76
Identities = 150/216 (69%), Positives = 170/216 (78%), Gaps = 5/216 (2%)
Frame = +1
Query: 85 GVYIPPFMLRKQDNNVSDYDKSSLAYQRLTWDALGKTINGLVNKVNATNIKNIVPELIQE 264
GVYIPPF + V D KSS+ YQRLTWDAL K+INGLVNKVNATNIKNI+PEL E
Sbjct: 302 GVYIPPFKMAMMMKEVQD--KSSVEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAE 359
Query: 265 NLIRGRGLFCRSIIKSQLASPRFTHVFSALVSVLNTKFPQXXXXXXXXXXXXXXXAYKRN 444
NLIRGRGLFCRS +KSQ+ASP FT VF+ALV+V+NTKFP+ AYKRN
Sbjct: 360 NLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAYKRN 419
Query: 445 DKPQLLAVTDFIAQLVNHE-----VALELLTILLDDPSEDSVEVAVRFVTRCGSLLQDLS 609
DKPQLLA FIA LVN + +ALELLT+LL+ P++DSVEVAV FVT CGS+LQDLS
Sbjct: 420 DKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPTDDSVEVAVGFVTECGSILQDLS 479
Query: 610 PKALHGIFERFRGILHEGQINKRVQFLIEGLFALRK 717
PK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RK
Sbjct: 480 PKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRK 515
>ref|XP_002456069.1| hypothetical protein SORBIDRAFT_03g029810 [Sorghum bicolor]
gi|241928044|gb|EES01189.1| hypothetical protein
SORBIDRAFT_03g029810 [Sorghum bicolor]
Length = 792
Score = 283 bits (723), Expect = 3e-74
Identities = 149/216 (68%), Positives = 172/216 (79%), Gaps = 5/216 (2%)
Frame = +1
Query: 85 GVYIPPFMLRKQDNNVSDYDKSSLAYQRLTWDALGKTINGLVNKVNATNIKNIVPELIQE 264
G+YIPPF + + +V D KSS YQRLTWDAL K+INGLVNKVNATNIKNIVPEL E
Sbjct: 221 GIYIPPFRMAQMMRDVED--KSSPEYQRLTWDALKKSINGLVNKVNATNIKNIVPELFAE 278
Query: 265 NLIRGRGLFCRSIIKSQLASPRFTHVFSALVSVLNTKFPQXXXXXXXXXXXXXXXAYKRN 444
NL+RGRGLFC+S IKSQ+ASP FT VF+ALV+V+NTKFP+ AYKRN
Sbjct: 279 NLVRGRGLFCQSCIKSQMASPGFTDVFAALVAVVNTKFPEIGRLLLVRVVLQLKRAYKRN 338
Query: 445 DKPQLLAVTDFIAQLVN----HE-VALELLTILLDDPSEDSVEVAVRFVTRCGSLLQDLS 609
DKPQLLA T FIA LVN HE VALELLT+LL++P++DSVEVAV FV CG++LQDLS
Sbjct: 339 DKPQLLAATKFIAHLVNQVVAHELVALELLTVLLENPTDDSVEVAVGFVKECGAMLQDLS 398
Query: 610 PKALHGIFERFRGILHEGQINKRVQFLIEGLFALRK 717
P+ LH IFERFRGILHEG+I+KRVQFLIEGLFA+RK
Sbjct: 399 PQGLHAIFERFRGILHEGEIDKRVQFLIEGLFAIRK 434