BLASTX nr result

ID: Coptis24_contig00010740 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010740
         (719 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-spl...   290   2e-76
ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   290   2e-76
ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   288   8e-76
ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   288   8e-76
ref|XP_002456069.1| hypothetical protein SORBIDRAFT_03g029810 [S...   283   3e-74

>ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22
           homolog, partial [Cucumis sativus]
          Length = 780

 Score =  290 bits (742), Expect = 2e-76
 Identities = 151/216 (69%), Positives = 172/216 (79%), Gaps = 5/216 (2%)
 Frame = +1

Query: 85  GVYIPPFMLRKQDNNVSDYDKSSLAYQRLTWDALGKTINGLVNKVNATNIKNIVPELIQE 264
           GVYIPPF L +    V D  KSS+ YQRLTWDAL K+INGLVNKVNATNIKNI+PEL  E
Sbjct: 223 GVYIPPFKLARMMKEVQD--KSSIEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAE 280

Query: 265 NLIRGRGLFCRSIIKSQLASPRFTHVFSALVSVLNTKFPQXXXXXXXXXXXXXXXAYKRN 444
           NLIRGRGLFCRS +KSQ+ASP FT VF+ALV+V+NTKFP+               AYKRN
Sbjct: 281 NLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAYKRN 340

Query: 445 DKPQLLAVTDFIAQLVNHEV-----ALELLTILLDDPSEDSVEVAVRFVTRCGSLLQDLS 609
           DKPQLLA   FIA LVN +V     ALELLT+LL++P++DSVEVAV FVT CGS+L+DLS
Sbjct: 341 DKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTECGSILKDLS 400

Query: 610 PKALHGIFERFRGILHEGQINKRVQFLIEGLFALRK 717
           PK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RK
Sbjct: 401 PKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRK 436


>ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Cucumis sativus]
          Length = 797

 Score =  290 bits (742), Expect = 2e-76
 Identities = 151/216 (69%), Positives = 172/216 (79%), Gaps = 5/216 (2%)
 Frame = +1

Query: 85  GVYIPPFMLRKQDNNVSDYDKSSLAYQRLTWDALGKTINGLVNKVNATNIKNIVPELIQE 264
           GVYIPPF L +    V D  KSS+ YQRLTWDAL K+INGLVNKVNATNIKNI+PEL  E
Sbjct: 223 GVYIPPFKLARMMKEVQD--KSSIEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAE 280

Query: 265 NLIRGRGLFCRSIIKSQLASPRFTHVFSALVSVLNTKFPQXXXXXXXXXXXXXXXAYKRN 444
           NLIRGRGLFCRS +KSQ+ASP FT VF+ALV+V+NTKFP+               AYKRN
Sbjct: 281 NLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAYKRN 340

Query: 445 DKPQLLAVTDFIAQLVNHEV-----ALELLTILLDDPSEDSVEVAVRFVTRCGSLLQDLS 609
           DKPQLLA   FIA LVN +V     ALELLT+LL++P++DSVEVAV FVT CGS+L+DLS
Sbjct: 341 DKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTECGSILKDLS 400

Query: 610 PKALHGIFERFRGILHEGQINKRVQFLIEGLFALRK 717
           PK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RK
Sbjct: 401 PKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRK 436


>ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 860

 Score =  288 bits (737), Expect = 8e-76
 Identities = 150/216 (69%), Positives = 170/216 (78%), Gaps = 5/216 (2%)
 Frame = +1

Query: 85  GVYIPPFMLRKQDNNVSDYDKSSLAYQRLTWDALGKTINGLVNKVNATNIKNIVPELIQE 264
           GVYIPPF +      V D  KSS+ YQRLTWDAL K+INGLVNKVNATNIKNI+PEL  E
Sbjct: 286 GVYIPPFKMAMMMKEVQD--KSSVEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAE 343

Query: 265 NLIRGRGLFCRSIIKSQLASPRFTHVFSALVSVLNTKFPQXXXXXXXXXXXXXXXAYKRN 444
           NLIRGRGLFCRS +KSQ+ASP FT VF+ALV+V+NTKFP+               AYKRN
Sbjct: 344 NLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAYKRN 403

Query: 445 DKPQLLAVTDFIAQLVNHE-----VALELLTILLDDPSEDSVEVAVRFVTRCGSLLQDLS 609
           DKPQLLA   FIA LVN +     +ALELLT+LL+ P++DSVEVAV FVT CGS+LQDLS
Sbjct: 404 DKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPTDDSVEVAVGFVTECGSILQDLS 463

Query: 610 PKALHGIFERFRGILHEGQINKRVQFLIEGLFALRK 717
           PK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RK
Sbjct: 464 PKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRK 499


>ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 871

 Score =  288 bits (737), Expect = 8e-76
 Identities = 150/216 (69%), Positives = 170/216 (78%), Gaps = 5/216 (2%)
 Frame = +1

Query: 85  GVYIPPFMLRKQDNNVSDYDKSSLAYQRLTWDALGKTINGLVNKVNATNIKNIVPELIQE 264
           GVYIPPF +      V D  KSS+ YQRLTWDAL K+INGLVNKVNATNIKNI+PEL  E
Sbjct: 302 GVYIPPFKMAMMMKEVQD--KSSVEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAE 359

Query: 265 NLIRGRGLFCRSIIKSQLASPRFTHVFSALVSVLNTKFPQXXXXXXXXXXXXXXXAYKRN 444
           NLIRGRGLFCRS +KSQ+ASP FT VF+ALV+V+NTKFP+               AYKRN
Sbjct: 360 NLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAYKRN 419

Query: 445 DKPQLLAVTDFIAQLVNHE-----VALELLTILLDDPSEDSVEVAVRFVTRCGSLLQDLS 609
           DKPQLLA   FIA LVN +     +ALELLT+LL+ P++DSVEVAV FVT CGS+LQDLS
Sbjct: 420 DKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPTDDSVEVAVGFVTECGSILQDLS 479

Query: 610 PKALHGIFERFRGILHEGQINKRVQFLIEGLFALRK 717
           PK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RK
Sbjct: 480 PKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRK 515


>ref|XP_002456069.1| hypothetical protein SORBIDRAFT_03g029810 [Sorghum bicolor]
           gi|241928044|gb|EES01189.1| hypothetical protein
           SORBIDRAFT_03g029810 [Sorghum bicolor]
          Length = 792

 Score =  283 bits (723), Expect = 3e-74
 Identities = 149/216 (68%), Positives = 172/216 (79%), Gaps = 5/216 (2%)
 Frame = +1

Query: 85  GVYIPPFMLRKQDNNVSDYDKSSLAYQRLTWDALGKTINGLVNKVNATNIKNIVPELIQE 264
           G+YIPPF + +   +V D  KSS  YQRLTWDAL K+INGLVNKVNATNIKNIVPEL  E
Sbjct: 221 GIYIPPFRMAQMMRDVED--KSSPEYQRLTWDALKKSINGLVNKVNATNIKNIVPELFAE 278

Query: 265 NLIRGRGLFCRSIIKSQLASPRFTHVFSALVSVLNTKFPQXXXXXXXXXXXXXXXAYKRN 444
           NL+RGRGLFC+S IKSQ+ASP FT VF+ALV+V+NTKFP+               AYKRN
Sbjct: 279 NLVRGRGLFCQSCIKSQMASPGFTDVFAALVAVVNTKFPEIGRLLLVRVVLQLKRAYKRN 338

Query: 445 DKPQLLAVTDFIAQLVN----HE-VALELLTILLDDPSEDSVEVAVRFVTRCGSLLQDLS 609
           DKPQLLA T FIA LVN    HE VALELLT+LL++P++DSVEVAV FV  CG++LQDLS
Sbjct: 339 DKPQLLAATKFIAHLVNQVVAHELVALELLTVLLENPTDDSVEVAVGFVKECGAMLQDLS 398

Query: 610 PKALHGIFERFRGILHEGQINKRVQFLIEGLFALRK 717
           P+ LH IFERFRGILHEG+I+KRVQFLIEGLFA+RK
Sbjct: 399 PQGLHAIFERFRGILHEGEIDKRVQFLIEGLFAIRK 434


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