BLASTX nr result
ID: Coptis24_contig00010730
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00010730 (1753 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containi... 366 1e-98 emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera] 366 1e-98 ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|2... 331 4e-88 ref|XP_002880144.1| pentatricopeptide repeat-containing protein ... 322 3e-85 ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Ar... 315 3e-83 >ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Vitis vinifera] gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera] Length = 577 Score = 366 bits (939), Expect = 1e-98 Identities = 172/315 (54%), Positives = 227/315 (72%) Frame = -3 Query: 1751 VFSWSCMISGYARRNRSEDAMKLFQNMVDESRVRPNEVTLVSVLSVCGHFTALDQGKWVH 1572 +FSW+ MISGY + + +A+KLF M + + P+EVT+VSVL ALD G WVH Sbjct: 247 LFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVH 306 Query: 1571 TYIERNGMRLSDNLGAALVDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAH 1392 ++ R + + N+G AL+DMYAKCG + + VF + + ++WNALI A+NG A Sbjct: 307 RFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAK 366 Query: 1391 AALEVFTEMLRLETKPDRITFLGVLMACCHGGLVEEGRYHFKSMLKDYGIQPELKHYGCM 1212 AL +F EM P+ IT +GVL AC H GLVEEG+ FK+M +++G+ P+++HYGCM Sbjct: 367 EALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAM-EEFGLTPKIEHYGCM 425 Query: 1211 VDILGRAGRVEEAEELMMNMPYELNSIVLSSFLFACGCRGDVMRAEKFIRKAFDIEPWND 1032 VD+LGRAG ++EAE+LM +MPYE N I+LSSFLFACG DV RAE+ +++A +E WND Sbjct: 426 VDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWND 485 Query: 1031 GNYIMMRNLYAGEKRWKEVEEIKGLMRKYRAKKEVGCSVIEVNNGVWEFVAGDRAHPQWE 852 GNYIM+RNLYA EKRWKE +E+KGLMR+ KKE GCS IEV++ VWEFVAGDR HP+WE Sbjct: 486 GNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWE 545 Query: 851 GMHLVLRQLWLHMKG 807 +H VL QLW+HMKG Sbjct: 546 AIHSVLGQLWVHMKG 560 Score = 58.9 bits (141), Expect = 4e-06 Identities = 34/133 (25%), Positives = 67/133 (50%) Frame = -3 Query: 1748 FSWSCMISGYARRNRSEDAMKLFQNMVDESRVRPNEVTLVSVLSVCGHFTALDQGKWVHT 1569 F + MI Y + ++ L++++ + P+ T + C A+ +G+ +H+ Sbjct: 53 FLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHS 112 Query: 1568 YIERNGMRLSDNLGAALVDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHA 1389 ++ G L ALVDMYAK G ++ A ++F ++ R+ +W ALI G +G Sbjct: 113 HVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDN 172 Query: 1388 ALEVFTEMLRLET 1350 A ++F +M+ ++ Sbjct: 173 AGKLFDQMIEKDS 185 >emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera] Length = 751 Score = 366 bits (939), Expect = 1e-98 Identities = 172/315 (54%), Positives = 227/315 (72%) Frame = -3 Query: 1751 VFSWSCMISGYARRNRSEDAMKLFQNMVDESRVRPNEVTLVSVLSVCGHFTALDQGKWVH 1572 +FSW+ MISGY + + +A+KLF M + + P+EVT+VSVL ALD G WVH Sbjct: 421 LFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVH 480 Query: 1571 TYIERNGMRLSDNLGAALVDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAH 1392 ++ R + + N+G AL+DMYAKCG + + VF + + ++WNALI A+NG A Sbjct: 481 RFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAK 540 Query: 1391 AALEVFTEMLRLETKPDRITFLGVLMACCHGGLVEEGRYHFKSMLKDYGIQPELKHYGCM 1212 AL +F EM P+ IT +GVL AC H GLVEEG+ FK+M +++G+ P+++HYGCM Sbjct: 541 EALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAM-EEFGLTPKIEHYGCM 599 Query: 1211 VDILGRAGRVEEAEELMMNMPYELNSIVLSSFLFACGCRGDVMRAEKFIRKAFDIEPWND 1032 VD+LGRAG ++EAE+LM +MPYE N I+LSSFLFACG DV RAE+ +++A +E WND Sbjct: 600 VDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWND 659 Query: 1031 GNYIMMRNLYAGEKRWKEVEEIKGLMRKYRAKKEVGCSVIEVNNGVWEFVAGDRAHPQWE 852 GNYIM+RNLYA EKRWKE +E+KGLMR+ KKE GCS IEV++ VWEFVAGDR HP+WE Sbjct: 660 GNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWE 719 Query: 851 GMHLVLRQLWLHMKG 807 +H VL QLW+HMKG Sbjct: 720 AIHSVLGQLWVHMKG 734 Score = 58.9 bits (141), Expect = 4e-06 Identities = 34/133 (25%), Positives = 67/133 (50%) Frame = -3 Query: 1748 FSWSCMISGYARRNRSEDAMKLFQNMVDESRVRPNEVTLVSVLSVCGHFTALDQGKWVHT 1569 F + MI Y + ++ L++++ + P+ T + C A+ +G+ +H+ Sbjct: 227 FLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHS 286 Query: 1568 YIERNGMRLSDNLGAALVDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHA 1389 ++ G L ALVDMYAK G ++ A ++F ++ R+ +W ALI G +G Sbjct: 287 HVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDN 346 Query: 1388 ALEVFTEMLRLET 1350 A ++F +M+ ++ Sbjct: 347 AGKLFDQMIEKDS 359 >ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa] Length = 581 Score = 331 bits (848), Expect = 4e-88 Identities = 158/315 (50%), Positives = 226/315 (71%) Frame = -3 Query: 1745 SWSCMISGYARRNRSEDAMKLFQNMVDESRVRPNEVTLVSVLSVCGHFTALDQGKWVHTY 1566 SW+ MI GY + + +A+KLF+ + + PNEVT+VS+L AL+ G+WVH + Sbjct: 263 SWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRF 322 Query: 1565 IERNGMRLSDNLGAALVDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHAA 1386 ++R + + N+ +LVDMY KCG + A +VFS++ + +TWNALI G A+NG+A A Sbjct: 323 VQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEA 382 Query: 1385 LEVFTEMLRLETKPDRITFLGVLMACCHGGLVEEGRYHFKSMLKDYGIQPELKHYGCMVD 1206 LE F+EM + KP+ IT GVL AC HGGLVEEG+ FK+M++ G+ P+++HYGC+VD Sbjct: 383 LEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAMIES-GLSPKIEHYGCLVD 441 Query: 1205 ILGRAGRVEEAEELMMNMPYELNSIVLSSFLFACGCRGDVMRAEKFIRKAFDIEPWNDGN 1026 +LGRAG ++EAE L+ +MP+E N I+LSSF FACG DV RA++ + +A ++EP N+G Sbjct: 442 LLGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDVTRAQRVLNQAVNMEPGNNGI 501 Query: 1025 YIMMRNLYAGEKRWKEVEEIKGLMRKYRAKKEVGCSVIEVNNGVWEFVAGDRAHPQWEGM 846 Y+MMRNLYA E+RWK+V+EI GLMR+ AKKEVG S IEV++ V EF++G AHPQ + + Sbjct: 502 YVMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAIEVDSRVSEFISGGIAHPQLDVI 561 Query: 845 HLVLRQLWLHMKGAV 801 V+ QLW+HM+ +V Sbjct: 562 ESVIGQLWIHMRDSV 576 >ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 555 Score = 322 bits (824), Expect = 3e-85 Identities = 150/312 (48%), Positives = 222/312 (71%) Frame = -3 Query: 1745 SWSCMISGYARRNRSEDAMKLFQNMVDESRVRPNEVTLVSVLSVCGHFTALDQGKWVHTY 1566 SW+ MI GY + + ++A++LFQ M + + P++VT++SVL AL G+W H + Sbjct: 240 SWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299 Query: 1565 IERNGMRLSDNLGAALVDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHAA 1386 ++R + + A++DMY+KCG +E A +F ++ + V++WNA+I G A+NG AHAA Sbjct: 300 VQRKNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAA 359 Query: 1385 LEVFTEMLRLETKPDRITFLGVLMACCHGGLVEEGRYHFKSMLKDYGIQPELKHYGCMVD 1206 L++F M + E KPD IT L V+ AC HGGLVEEGR F+ M++ +G+ +++HYGCMVD Sbjct: 360 LDLFLTMAK-EEKPDEITMLAVISACNHGGLVEEGRKWFQ-MMRKFGLNAKIEHYGCMVD 417 Query: 1205 ILGRAGRVEEAEELMMNMPYELNSIVLSSFLFACGCRGDVMRAEKFIRKAFDIEPWNDGN 1026 +LGRAG +++AE L+ NMP++ N I+LSSFL ACG D+ RAE+ ++KA ++EP NDGN Sbjct: 418 LLGRAGNLKQAEHLITNMPFKPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGN 477 Query: 1025 YIMMRNLYAGEKRWKEVEEIKGLMRKYRAKKEVGCSVIEVNNGVWEFVAGDRAHPQWEGM 846 Y+++RNLYA +KRW + +K +MRK AKKEVGCS+IE+N V EF++GD HP + + Sbjct: 478 YVLLRNLYAADKRWDDFGMVKNMMRKNEAKKEVGCSLIEINYIVSEFISGDTTHPHRQSI 537 Query: 845 HLVLRQLWLHMK 810 HLVL +L +HMK Sbjct: 538 HLVLEKLLVHMK 549 Score = 59.3 bits (142), Expect = 3e-06 Identities = 35/128 (27%), Positives = 60/128 (46%) Frame = -3 Query: 1748 FSWSCMISGYARRNRSEDAMKLFQNMVDESRVRPNEVTLVSVLSVCGHFTALDQGKWVHT 1569 F + MI Y D+ ++++ E+ + P+ T ++ C + QG +H+ Sbjct: 43 FLCNSMIKAYLETRHYNDSFAFYRDLRKETCLAPDNFTFTTMTKSCTLSMCVYQGLQLHS 102 Query: 1568 YIERNGMRLSDNLGAALVDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHA 1389 I R+G + +VDMYAK G + A VF ++ R+ +W ALI G G Sbjct: 103 QIWRSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYVRFGELDL 162 Query: 1388 ALEVFTEM 1365 A ++F +M Sbjct: 163 ASKLFDQM 170 >ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana] gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 555 Score = 315 bits (806), Expect = 3e-83 Identities = 149/311 (47%), Positives = 218/311 (70%) Frame = -3 Query: 1745 SWSCMISGYARRNRSEDAMKLFQNMVDESRVRPNEVTLVSVLSVCGHFTALDQGKWVHTY 1566 SW+ MI GY + + ++ ++LFQ M + + P++VT++SVL AL G+W H + Sbjct: 240 SWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299 Query: 1565 IERNGMRLSDNLGAALVDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHAA 1386 ++R + + A++DMY+KCG +E A +F ++ + V++WNA+I G A+NG A AA Sbjct: 300 VQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAA 359 Query: 1385 LEVFTEMLRLETKPDRITFLGVLMACCHGGLVEEGRYHFKSMLKDYGIQPELKHYGCMVD 1206 L++F M+ +E KPD IT L V+ AC HGGLVEEGR F M ++ G+ +++HYGCMVD Sbjct: 360 LDLFVTMM-IEEKPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVD 417 Query: 1205 ILGRAGRVEEAEELMMNMPYELNSIVLSSFLFACGCRGDVMRAEKFIRKAFDIEPWNDGN 1026 +LGRAG ++EAE+L+ NMP+E N I+LSSFL ACG D+ RAE+ ++KA ++EP NDGN Sbjct: 418 LLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGN 477 Query: 1025 YIMMRNLYAGEKRWKEVEEIKGLMRKYRAKKEVGCSVIEVNNGVWEFVAGDRAHPQWEGM 846 Y+++RNLYA +KRW + +K +MRK +AKKEVGCS+IE+N V EF++GD HP + Sbjct: 478 YVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSI 537 Query: 845 HLVLRQLWLHM 813 HLVL L +HM Sbjct: 538 HLVLGDLLMHM 548 Score = 60.8 bits (146), Expect = 1e-06 Identities = 36/128 (28%), Positives = 61/128 (47%) Frame = -3 Query: 1748 FSWSCMISGYARRNRSEDAMKLFQNMVDESRVRPNEVTLVSVLSVCGHFTALDQGKWVHT 1569 F + MI Y + D+ L++++ E+ P+ T ++ C + QG +H+ Sbjct: 43 FLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHS 102 Query: 1568 YIERNGMRLSDNLGAALVDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHA 1389 I R G + +VDMYAK G + A F ++ HR+ +W ALI+G G Sbjct: 103 QIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDL 162 Query: 1388 ALEVFTEM 1365 A ++F +M Sbjct: 163 ASKLFDQM 170