BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010703
         (1344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vi...   306   6e-81
emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera]   303   7e-80
ref|XP_002322279.1| chromatin remodeling complex subunit [Populu...   254   4e-65
ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago tr...   239   2e-60
ref|XP_002511138.1| DNA binding protein, putative [Ricinus commu...   237   4e-60

>ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vitis vinifera]
            gi|297734457|emb|CBI15704.3| unnamed protein product
            [Vitis vinifera]
          Length = 563

 Score =  306 bits (785), Expect = 6e-81
 Identities = 179/388 (46%), Positives = 230/388 (59%), Gaps = 3/388 (0%)
 Frame = -3

Query: 1288 RLPPLASCNDVFGGGLK--GLSCVKCGEVFASKSGEAN-KKENAVTCLKCLKNGNIEESK 1118
            RLPPLAS +DVF    K  GL C  CG+     SG  N  K + V C+KC KNGN  E++
Sbjct: 170  RLPPLASYSDVFSDLTKEKGLVCGNCGD--NCDSGHYNCLKGSPVICVKCFKNGNYGENR 227

Query: 1117 SENDVNFKDSKDGSDNCEVDSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKL 938
            S +D  F D  +   N     WTE E          HGDDW+LV ++V+TK + DCISKL
Sbjct: 228  SVDDFKFNDCNENRGNRGA-VWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKL 286

Query: 937  IQLPFGELMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNG 758
            I+LPFGELML ++ GK      N+S+I   Q   T +E Q+ IK       Q++ES+QNG
Sbjct: 287  IELPFGELMLGSSLGKSRASNDNTSSIKPVQ---TSLESQENIKNGGQGDEQINESEQNG 343

Query: 757  DGETEEPPLKRRCIDRLADASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARV 578
            D E + PPLKR+CI  L+DA  SLM+QVA +ST+V PH+          ALC+ENP  + 
Sbjct: 344  DAENQGPPLKRKCITSLSDAGISLMRQVAVISTMVGPHISAAAADAAVAALCDENPCVKD 403

Query: 577  YFEDVGDDITNVLDSPTSSSKATSLLNVEDSEMVERHAQSESQVGDAEKNPIALTLRXXX 398
             F+   D++T  L SP  ++K    L VEDSE+ ER   SE Q   +EKN I L L+   
Sbjct: 404  IFDGAEDNVTEELGSPIRNNKLERSLMVEDSEINERPILSEIQKTSSEKNAIPLPLQMRA 463

Query: 397  XXXXXXXXXXXXXXXXADQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQI 218
                            ADQE REIEHLVAT+IETQ++K+ CKI+HFE+L+LIME EYT +
Sbjct: 464  AIATALGAAAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHL 523

Query: 217  QELKESXXXXXXXXXXXVFSAGIARWRD 134
            +ELKES           VF+AGI+RWRD
Sbjct: 524  KELKESIIAERIDILQRVFNAGISRWRD 551


>emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera]
          Length = 563

 Score =  303 bits (776), Expect = 7e-80
 Identities = 178/388 (45%), Positives = 228/388 (58%), Gaps = 3/388 (0%)
 Frame = -3

Query: 1288 RLPPLASCNDVFGGGLK--GLSCVKCGEVFASKSGEAN-KKENAVTCLKCLKNGNIEESK 1118
            RLPPLAS +DVF    K  GL C  CG+     SG  N  K + V C+KC KNGN  E++
Sbjct: 170  RLPPLASYSDVFSDLTKEKGLVCGNCGD--NCDSGHYNCLKGSPVICVKCFKNGNYGENR 227

Query: 1117 SENDVNFKDSKDGSDNCEVDSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKL 938
            S +D  F D  +   N     WTE E          HGDDW+LV ++V+TK + DCISKL
Sbjct: 228  SVDDFKFNDCNENRGNRGA-VWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKL 286

Query: 937  IQLPFGELMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNG 758
            I+LPFGELML ++ GK      N+S+I   Q   T +E Q+ IK       Q++ES+QNG
Sbjct: 287  IELPFGELMLGSSLGKSRASNDNTSSIKPVQ---TSLESQENIKNGGQGDEQINESEQNG 343

Query: 757  DGETEEPPLKRRCIDRLADASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARV 578
            D E + PPLKR+CI  L+DA  SLM QVA +ST+V PH+          ALC+ENP  + 
Sbjct: 344  DAENQGPPLKRKCITSLSDAGISLMXQVAVISTMVGPHISAAAADAAVAALCDENPCVKD 403

Query: 577  YFEDVGDDITNVLDSPTSSSKATSLLNVEDSEMVERHAQSESQVGDAEKNPIALTLRXXX 398
             F+   D++T  L SP  ++     L VEDSE+ ER   SE Q   +EKN I L L+   
Sbjct: 404  IFDGAEDNVTEELGSPIRNNXLERSLMVEDSEINERPILSEIQKTSSEKNAIPLPLQMRA 463

Query: 397  XXXXXXXXXXXXXXXXADQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQI 218
                            ADQE REIEHLVAT+IETQ++K+ CKI+HFE+L+LIME EYT +
Sbjct: 464  AIATALGAAAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHL 523

Query: 217  QELKESXXXXXXXXXXXVFSAGIARWRD 134
            +ELKES           VF+AGI+RWRD
Sbjct: 524  KELKESIIAERIDILQRVFNAGISRWRD 551


>ref|XP_002322279.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222869275|gb|EEF06406.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 570

 Score =  254 bits (649), Expect = 4e-65
 Identities = 155/390 (39%), Positives = 218/390 (55%), Gaps = 3/390 (0%)
 Frame = -3

Query: 1291 LRLPPLASCNDVFG---GGLKGLSCVKCGEVFASKSGEANKKENAVTCLKCLKNGNIEES 1121
            L+LPPLAS +DVFG   G  K + C  CG    S   E +K +  + C KC  +G   E+
Sbjct: 172  LKLPPLASYSDVFGELVGKKKEVVCGNCGGSCDSGQYEHSKGDYLI-CQKCFNDGTYGEN 230

Query: 1120 KSENDVNFKDSKDGSDNCEVDSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISK 941
            KS++D   K S + + +     WTE E          HG+DWDLVA++VKTK + DCISK
Sbjct: 231  KSKDDFKLKVSAENNGS-NAAVWTEEETLRLLESVSRHGNDWDLVAQNVKTKTKLDCISK 289

Query: 940  LIQLPFGELMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQN 761
            LI+LPFG+L+L++T GKG+      ST N  Q  +   E QD  K +D  H Q++ +++ 
Sbjct: 290  LIELPFGDLILSSTYGKGNSSGQIGSTNNSKQVPAAPSEHQDDTKHEDQLHEQMNANEEK 349

Query: 760  GDGETEEPPLKRRCIDRLADASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYAR 581
            GD   + P LKRR I  ++DA  SLMKQVA +ST+V P +          ALC+E    R
Sbjct: 350  GDVMDDGPLLKRRRITSVSDAGGSLMKQVALISTMVGPDITAAAAEAAVAALCDETACPR 409

Query: 580  VYFEDVGDDITNVLDSPTSSSKATSLLNVEDSEMVERHAQSESQVGDAEKNPIALTLRXX 401
              F+   D  +N   SP+  SK+  +  V+ SE+ +   QS ++   A +N I L+LR  
Sbjct: 410  EIFDGEEDFPSNGFSSPSFHSKSKRVDEVDASEVKQTPTQSVNEEASAWQNDIPLSLRLR 469

Query: 400  XXXXXXXXXXXXXXXXXADQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQ 221
                             ADQEDRE+E+L+AT++ETQL+K+  KIKHF++L+LIME EY +
Sbjct: 470  AAVATTLGAAAAHAKLLADQEDREVENLMATIVETQLKKLHHKIKHFDDLELIMEKEYAE 529

Query: 220  IQELKESXXXXXXXXXXXVFSAGIARWRDH 131
            + EL ES              AGI++ RDH
Sbjct: 530  LDELTESLTEERIDVLQRAIRAGISKSRDH 559


>ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago truncatula]
            gi|355491835|gb|AES73038.1| SWI/SNF complex subunit
            SMARCC2 [Medicago truncatula]
          Length = 540

 Score =  239 bits (609), Expect = 2e-60
 Identities = 156/394 (39%), Positives = 211/394 (53%), Gaps = 2/394 (0%)
 Frame = -3

Query: 1291 LRLPPLASCNDVFGGGL--KGLSCVKCGEVFASKSGEANKKENAVTCLKCLKNGNIEESK 1118
            +++ PLAS +DV+G  +  K ++C  CG+   S    + K +N + C KC KNGN  E +
Sbjct: 168  VKIAPLASYSDVYGDLIRRKEVNCGNCGDKCGSGHYRSTK-DNFIICTKCFKNGNYGEKR 226

Query: 1117 SENDVNFKDSKDGSDNCEVDSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKL 938
            S  D    +S + S N     WTE E          HGDDW+LVA+ V+TK + +CISKL
Sbjct: 227  SMEDFKLNESSEISANHSA-VWTEGETLLLLESVLKHGDDWELVAQSVRTKTKLECISKL 285

Query: 937  IQLPFGELMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKEKDLCHYQVSESDQNG 758
            I+LPFGELML +     +         N  Q Q +  + Q+    +D      +E +QNG
Sbjct: 286  IELPFGELMLASVRRNDNSNSVTGIVNNRNQVQVSSSDHQETSMTQDQSSEPKNEVEQNG 345

Query: 757  DGETEEPPLKRRCIDRLADASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARV 578
            D   E P  KRR +  L+D+S SLMKQV  LSTVV PHV          ALC+EN   R 
Sbjct: 346  DAVNENPS-KRRRVSTLSDSSSSLMKQVGLLSTVVDPHVTAAAASAAITALCDENSLPRD 404

Query: 577  YFEDVGDDITNVLDSPTSSSKATSLLNVEDSEMVERHAQSESQVGDAEKNPIALTLRXXX 398
             F DV +D         +S++A   L  E  EMVE   QSE       K+ I LTLR   
Sbjct: 405  IF-DVEED--------NASARA---LEAEGLEMVEGSTQSEV------KDDIPLTLRIRA 446

Query: 397  XXXXXXXXXXXXXXXXADQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQI 218
                            ADQEDREIEHLVAT+IE Q+ K+Q K+KHF+EL+L+ME E+ ++
Sbjct: 447  AIGTALGATAARAKLLADQEDREIEHLVATIIEAQVEKLQQKVKHFDELELLMEKEHAEM 506

Query: 217  QELKESXXXXXXXXXXXVFSAGIARWRDHHSSVK 116
            +ELK+S            F +G+ARW+ H+ S+K
Sbjct: 507  EELKDSILTERIDVLRKTFKSGVARWK-HYPSLK 539


>ref|XP_002511138.1| DNA binding protein, putative [Ricinus communis]
            gi|223550253|gb|EEF51740.1| DNA binding protein, putative
            [Ricinus communis]
          Length = 547

 Score =  237 bits (605), Expect = 4e-60
 Identities = 151/391 (38%), Positives = 207/391 (52%), Gaps = 1/391 (0%)
 Frame = -3

Query: 1291 LRLPPLASCNDVFGGGLKGLSCVKCGEVFASKSGEANKKENAVTCLKCLKNGNIEESKSE 1112
            LRLPPL S +DVFG  + G  C  CGE   S   E +K E  + C  C  NG+  ++ S+
Sbjct: 161  LRLPPLTSHSDVFGKQI-GFVCGNCGETCNSGRYECSKGEY-ILCTNCFNNGDYGQNNSK 218

Query: 1111 NDVNFKDSKDGSDNCEVDSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKLIQ 932
            +D  F DS D S       W+E E          HGD+WDLV RDV+TK + +CI+KLI+
Sbjct: 219  DDYKFNDSVDHSSGTV---WSEAETILLLESVLKHGDNWDLVVRDVQTKSKLECIAKLIE 275

Query: 931  LPFGELMLNTTNGKGDGRKSNSSTINIAQGQSTQIELQDLIKE-KDLCHYQVSESDQNGD 755
            LPF  L+L++T   GD    + S   +     +  E QD +   + L     + S+QNGD
Sbjct: 276  LPFRNLLLSSTL-VGDTSGLSGSADYLKPVPVSSSEKQDAVDNIEGLLPESQNVSEQNGD 334

Query: 754  GETEEPPLKRRCIDRLADASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARVY 575
               E  PLKR+ I  L+DA   LMKQVA +ST+  P V          ALC+E    R  
Sbjct: 335  AADEGSPLKRKRIVSLSDAGSCLMKQVALISTMAGPDVASAAAKAAIGALCDETSCPREI 394

Query: 574  FEDVGDDITNVLDSPTSSSKATSLLNVEDSEMVERHAQSESQVGDAEKNPIALTLRXXXX 395
            F    D     L SPT  S+   +L V+D+E+ ER  Q E++     +N I LTLR    
Sbjct: 395  FGGKEDFPAKGLWSPTLCSRPERVLYVKDTEIKERSTQLETEDTSLGQNDIPLTLRLRTA 454

Query: 394  XXXXXXXXXXXXXXXADQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQ 215
                           AD+ED++IE LV TV+E QL+K+Q KIKHF+ L+LIME EY +++
Sbjct: 455  VATSLGAAAAHAKLLADEEDQKIEKLVTTVVEAQLKKLQYKIKHFDNLELIMEKEYAELE 514

Query: 214  ELKESXXXXXXXXXXXVFSAGIARWRDHHSS 122
            EL+ES              AG+++WRDH ++
Sbjct: 515  ELQESLIEERMDVVQRAIMAGLSKWRDHSAA 545