BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010688
         (1379 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281874.1| PREDICTED: DNA repair protein RAD51 homolog ...   333   e-132
ref|XP_004149537.1| PREDICTED: DNA repair protein RAD51 homolog ...   333   e-130
emb|CBI16239.3| unnamed protein product [Vitis vinifera]              323   e-130
ref|XP_004170620.1| PREDICTED: DNA repair protein RAD51 homolog ...   322   e-127
ref|NP_001031438.1| DNA repair protein RAD51-like 2 [Arabidopsis...   315   e-124

>ref|XP_002281874.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Vitis vinifera]
          Length = 439

 Score =  333 bits (853), Expect(2) = e-132
 Identities = 168/234 (71%), Positives = 204/234 (87%), Gaps = 4/234 (1%)
 Frame = -3

Query: 1377 LITEMGLPKPISNLFAARNILTAKDALSLTEFELMELLDVELSQITSAISRITEVTCPPY 1198
            LI+EMGLP  I+N+FAARNI TAK+ALSLTEFELMELLDV ++++TSA++ I+E+  PP 
Sbjct: 5    LISEMGLPTSIANIFAARNITTAKEALSLTEFELMELLDVGMARVTSAVAHISEIVSPPT 64

Query: 1197 QTAQSLMEERVGSE----HLATGLSGLDKCLCGGIPFGVLTELVGPAGIGKTQFCLKLAL 1030
            QTA SLME+RV +E    HL T L GLD+ L GGIPFGVLTELVGP GIGKTQFCLKL+L
Sbjct: 65   QTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGIPFGVLTELVGPPGIGKTQFCLKLSL 124

Query: 1029 LAALPVSYGGLSGRVIYIDTEAKFSSKRMIEIGIKSFPEIFHLDGMAEEMAGRILVLRPA 850
            LA+LP SYGGL GRVIYID E+KFSS+RMIEIG KSFPEIFH++GMA+EMAGRILVLRP 
Sbjct: 125  LASLPASYGGLDGRVIYIDAESKFSSRRMIEIGSKSFPEIFHVEGMAKEMAGRILVLRPT 184

Query: 849  SLSEFTESLQQIQLSVLQHQVKLLIVDSVASLVSGEYEKDAPKQNSLGWHISFL 688
            SLSEFTESLQ I++S+LQ+ VKLL++DS+A+LV+GEY++   +Q+SLGWHISF+
Sbjct: 185  SLSEFTESLQHIKISLLQNHVKLLVIDSMAALVTGEYDQGPTRQHSLGWHISFV 238



 Score =  166 bits (419), Expect(2) = e-132
 Identities = 82/125 (65%), Positives = 103/125 (82%), Gaps = 1/125 (0%)
 Frame = -2

Query: 577 FSRIPIVVTNQVRSQS-SGDAVYSFQVQNRHENVKDTGGLELHLVAALGIHWAHAVTIRL 401
           FSRIPIVVTNQVRSQS  G + YSFQV++R E V D    + HLVAALGIHWAHAVTIRL
Sbjct: 244 FSRIPIVVTNQVRSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAALGIHWAHAVTIRL 303

Query: 400 VLEASSGQRYIKVAKSPMSPPIAFPFIVTSSGISLLSDDGTEVEGAEINAIHCQGYSDVV 221
           VLEA +GQR++KVAKSP+SPP+AFPF +T SGISLL+D+G E++G +I+ IH QG+ D++
Sbjct: 304 VLEAKAGQRFLKVAKSPISPPLAFPFNITPSGISLLNDEGIEMKGPQISTIHYQGHEDII 363

Query: 220 DLNRE 206
           + + E
Sbjct: 364 NFDSE 368


>ref|XP_004149537.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cucumis sativus]
          Length = 371

 Score =  333 bits (855), Expect(2) = e-130
 Identities = 168/234 (71%), Positives = 205/234 (87%), Gaps = 4/234 (1%)
 Frame = -3

Query: 1377 LITEMGLPKPISNLFAARNILTAKDALSLTEFELMELLDVELSQITSAISRITEVTCPPY 1198
            LI +MGLP+ I+N+FAARNI TAK+ALSLTEFELMELLDV LS++ SA++ I+E+  PPY
Sbjct: 5    LINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIASPPY 64

Query: 1197 QTAQSLMEERVGSEHLA----TGLSGLDKCLCGGIPFGVLTELVGPAGIGKTQFCLKLAL 1030
            QTA SLME+R+ +EHLA    T L GLD+ L GGIPFGVLTELVGPAGIGKTQFCLKL+ 
Sbjct: 65   QTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPAGIGKTQFCLKLSF 124

Query: 1029 LAALPVSYGGLSGRVIYIDTEAKFSSKRMIEIGIKSFPEIFHLDGMAEEMAGRILVLRPA 850
            LAALP SYGGL GRVIYID E+KFSSKRMIEIG++SFP++F+   MA+EMAGRILVLRPA
Sbjct: 125  LAALPPSYGGLDGRVIYIDVESKFSSKRMIEIGMRSFPDVFNKKDMAQEMAGRILVLRPA 184

Query: 849  SLSEFTESLQQIQLSVLQHQVKLLIVDSVASLVSGEYEKDAPKQNSLGWHISFL 688
            SLSEFTESL +I++S+L+ +VKL+I+DS+A+L++GEYE  APKQ+SLGWHISF+
Sbjct: 185  SLSEFTESLHKIKVSLLEQEVKLVIIDSMAALITGEYELGAPKQHSLGWHISFI 238



 Score =  160 bits (404), Expect(2) = e-130
 Identities = 78/120 (65%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
 Frame = -2

Query: 577 FSRIPIVVTNQVRSQSSGDAV-YSFQVQNRHENVKDTGGLELHLVAALGIHWAHAVTIRL 401
           F+RIP+VVTNQVRS++  +   YSFQ  +R E  + + G   H+VAALG+HWAH+VTIRL
Sbjct: 244 FARIPVVVTNQVRSRNRKEVSHYSFQGWSRSECQEYSSGYGSHIVAALGVHWAHSVTIRL 303

Query: 400 VLEASSGQRYIKVAKSPMSPPIAFPFIVTSSGISLLSDDGTEVEGAEINAIHCQGYSDVV 221
           VLEA SGQR+IK+AKSPMSPP+AFPF +T+SGISLLS++G E+ GAEIN IHCQG+SD++
Sbjct: 304 VLEAKSGQRFIKLAKSPMSPPLAFPFTITASGISLLSNNGEELSGAEINEIHCQGHSDII 363


>emb|CBI16239.3| unnamed protein product [Vitis vinifera]
          Length = 371

 Score =  323 bits (828), Expect(2) = e-130
 Identities = 164/234 (70%), Positives = 200/234 (85%), Gaps = 4/234 (1%)
 Frame = -3

Query: 1377 LITEMGLPKPISNLFAARNILTAKDALSLTEFELMELLDVELSQITSAISRITEVTCPPY 1198
            LI+EMGLP  I+N+FAARNI TAK+ALSLTEFELMELLDV ++++TSA++ I+E+  PP 
Sbjct: 5    LISEMGLPTSIANIFAARNITTAKEALSLTEFELMELLDVGMARVTSAVAHISEIVSPPT 64

Query: 1197 QTAQSLMEERVGSE----HLATGLSGLDKCLCGGIPFGVLTELVGPAGIGKTQFCLKLAL 1030
            QTA SLME+RV +E    HL T L GLD+ L GGIPFGVLTELVGP GIGKTQFCLKL+L
Sbjct: 65   QTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGIPFGVLTELVGPPGIGKTQFCLKLSL 124

Query: 1029 LAALPVSYGGLSGRVIYIDTEAKFSSKRMIEIGIKSFPEIFHLDGMAEEMAGRILVLRPA 850
            LA+LP SYGGL GRVIYID E+KFSS+RMIEIG KSFPEIFH++GMA+E    ILVLRP 
Sbjct: 125  LASLPASYGGLDGRVIYIDAESKFSSRRMIEIGSKSFPEIFHVEGMAKEACPLILVLRPT 184

Query: 849  SLSEFTESLQQIQLSVLQHQVKLLIVDSVASLVSGEYEKDAPKQNSLGWHISFL 688
            SLSEFTESLQ I++S+LQ+ VKLL++DS+A+LV+GEY++   +Q+SLGWHISF+
Sbjct: 185  SLSEFTESLQHIKISLLQNHVKLLVIDSMAALVTGEYDQGPTRQHSLGWHISFV 238



 Score =  169 bits (428), Expect(2) = e-130
 Identities = 84/127 (66%), Positives = 105/127 (82%), Gaps = 1/127 (0%)
 Frame = -2

Query: 577 FSRIPIVVTNQVRSQS-SGDAVYSFQVQNRHENVKDTGGLELHLVAALGIHWAHAVTIRL 401
           FSRIPIVVTNQVRSQS  G + YSFQV++R E V D    + HLVAALGIHWAHAVTIRL
Sbjct: 244 FSRIPIVVTNQVRSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAALGIHWAHAVTIRL 303

Query: 400 VLEASSGQRYIKVAKSPMSPPIAFPFIVTSSGISLLSDDGTEVEGAEINAIHCQGYSDVV 221
           VLEA +GQR++KVAKSP+SPP+AFPF +T SGISLL+D+G E++G +I+ IH QG+ D++
Sbjct: 304 VLEAKAGQRFLKVAKSPISPPLAFPFNITPSGISLLNDEGIEMKGPQISTIHYQGHEDII 363

Query: 220 DLNRERL 200
           + + ERL
Sbjct: 364 NFDSERL 370


>ref|XP_004170620.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cucumis sativus]
          Length = 379

 Score =  322 bits (824), Expect(2) = e-127
 Identities = 164/242 (67%), Positives = 204/242 (84%), Gaps = 12/242 (4%)
 Frame = -3

Query: 1377 LITEMGLPKPISNLFAARNILTAKDALSLTEFELMELLDVELSQITSAISRITEVTCPPY 1198
            LI +MGLP+ I+N+FAARNI TAK+ALSLTEFELMELLDV LS++ SA++ I+E+  PPY
Sbjct: 5    LINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIASPPY 64

Query: 1197 QTAQSLMEERVGSEHLA----TGLSGLDKCLCGGIPFGVLTELVGPAGIGKTQFCLKLAL 1030
            QTA SLME+R+ +EHLA    T L GLD+ L GGIPFGVLTELVGPAGIGKTQFCLKL+ 
Sbjct: 65   QTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPAGIGKTQFCLKLSF 124

Query: 1029 LAALPVSYGGLSGRVIYIDTEAKFSSKR--------MIEIGIKSFPEIFHLDGMAEEMAG 874
            LAALP SYGGL GRVIYID E+KFSSKR        +++ G++SFP++F+   MA+EMAG
Sbjct: 125  LAALPPSYGGLDGRVIYIDVESKFSSKRYFKYSIDVLVKFGMRSFPDVFNKKDMAQEMAG 184

Query: 873  RILVLRPASLSEFTESLQQIQLSVLQHQVKLLIVDSVASLVSGEYEKDAPKQNSLGWHIS 694
            RILVLRPASLSEFTESL +I++S+L+ +VKL+I+DS+A+L++GEYE  APKQ+SLGWHIS
Sbjct: 185  RILVLRPASLSEFTESLHKIKVSLLEQEVKLVIIDSMAALITGEYELGAPKQHSLGWHIS 244

Query: 693  FL 688
            F+
Sbjct: 245  FI 246



 Score =  160 bits (404), Expect(2) = e-127
 Identities = 78/120 (65%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
 Frame = -2

Query: 577 FSRIPIVVTNQVRSQSSGDAV-YSFQVQNRHENVKDTGGLELHLVAALGIHWAHAVTIRL 401
           F+RIP+VVTNQVRS++  +   YSFQ  +R E  + + G   H+VAALG+HWAH+VTIRL
Sbjct: 252 FARIPVVVTNQVRSRNRKEVSHYSFQGWSRSECQEYSSGYGSHIVAALGVHWAHSVTIRL 311

Query: 400 VLEASSGQRYIKVAKSPMSPPIAFPFIVTSSGISLLSDDGTEVEGAEINAIHCQGYSDVV 221
           VLEA SGQR+IK+AKSPMSPP+AFPF +T+SGISLLS++G E+ GAEIN IHCQG+SD++
Sbjct: 312 VLEAKSGQRFIKLAKSPMSPPLAFPFTITASGISLLSNNGEELSGAEINEIHCQGHSDII 371


>ref|NP_001031438.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
            gi|83305358|sp|Q9SK02.2|RA51B_ARATH RecName: Full=DNA
            repair protein RAD51 homolog 2; Short=AtRAD51B
            gi|58430738|dbj|BAD89163.1| AtRAD51Balpha [Arabidopsis
            thaliana] gi|330253047|gb|AEC08141.1| DNA repair protein
            RAD51-like 2 [Arabidopsis thaliana]
          Length = 370

 Score =  315 bits (808), Expect(2) = e-124
 Identities = 159/234 (67%), Positives = 198/234 (84%), Gaps = 4/234 (1%)
 Frame = -3

Query: 1377 LITEMGLPKPISNLFAARNILTAKDALSLTEFELMELLDVELSQITSAISRITEVTCPPY 1198
            LI EMGL   ISN+FAARNI+TAKDALS+TEFELMELLDV + +I SAIS I+E T PP 
Sbjct: 5    LIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEATSPPC 64

Query: 1197 QTAQSLMEERVGSEHLA----TGLSGLDKCLCGGIPFGVLTELVGPAGIGKTQFCLKLAL 1030
            Q+A+SL+E++V +EHL+    T L GLD  LCGGIPFGVLTELVGP GIGK+QFC+KLAL
Sbjct: 65   QSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLAL 124

Query: 1029 LAALPVSYGGLSGRVIYIDTEAKFSSKRMIEIGIKSFPEIFHLDGMAEEMAGRILVLRPA 850
             A+ PV+YGGL GRVIYID E+KFSS+R+IE+G++SFPE+FHL GMA+EMAGRILVLRP 
Sbjct: 125  SASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPT 184

Query: 849  SLSEFTESLQQIQLSVLQHQVKLLIVDSVASLVSGEYEKDAPKQNSLGWHISFL 688
            SL+ FTES+Q+++ S+LQ+QVKLL++DS+ +L+SGE +  A +Q  LGWHISFL
Sbjct: 185  SLANFTESIQELKNSILQNQVKLLVIDSMTALLSGENKPGAQRQPQLGWHISFL 238



 Score =  157 bits (397), Expect(2) = e-124
 Identities = 81/123 (65%), Positives = 101/123 (82%), Gaps = 1/123 (0%)
 Frame = -2

Query: 577 FSRIPIVVTNQVRSQSSGD-AVYSFQVQNRHENVKDTGGLELHLVAALGIHWAHAVTIRL 401
           FSRIPIVVTNQVRSQ+  + + YSFQ + + E   +T   + HLVAALGI+WAHAVTIRL
Sbjct: 244 FSRIPIVVTNQVRSQNRDETSQYSFQAKVKDEFKDNTKTYDSHLVAALGINWAHAVTIRL 303

Query: 400 VLEASSGQRYIKVAKSPMSPPIAFPFIVTSSGISLLSDDGTEVEGAEINAIHCQGYSDVV 221
           VLEA SGQR IKVAKSPMSPP+AFPF +TS+GISLLSD+GTE++G  IN IH +G+SD++
Sbjct: 304 VLEAKSGQRIIKVAKSPMSPPLAFPFHITSAGISLLSDNGTELKGPGINTIHARGHSDMI 363

Query: 220 DLN 212
           + +
Sbjct: 364 NFH 366