BLASTX nr result

ID: Coptis24_contig00010678 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010678
         (606 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003536885.1| PREDICTED: ABC transporter C family member 4...   345   4e-93
emb|CBI36841.3| unnamed protein product [Vitis vinifera]              342   2e-92
ref|XP_002265012.1| PREDICTED: ABC transporter C family member 4...   342   2e-92
ref|XP_002523063.1| multidrug resistance-associated protein 2, 6...   342   4e-92
ref|XP_002321011.1| multidrug resistance protein ABC transporter...   341   7e-92

>ref|XP_003536885.1| PREDICTED: ABC transporter C family member 4-like [Glycine max]
          Length = 1501

 Score =  345 bits (885), Expect = 4e-93
 Identities = 163/202 (80%), Positives = 184/202 (91%)
 Frame = -1

Query: 606  LSLSYGLSLNGVLFYAVYMSCFVENRIISVERIKQFINIPSEAPWHIEGCIPSPNWPTHG 427
            LSLSYGLSLN V+F+A+YMSCF+EN+++SVERIKQF NIPSEA W+I+  +P  NWP  G
Sbjct: 1198 LSLSYGLSLNAVMFWAIYMSCFIENKMVSVERIKQFTNIPSEASWNIKDRLPPANWPGEG 1257

Query: 426  DVDIKDLQVRYRPNTPLILKGITLSIQGGEKIGVVGRTGSGKSTLIQALFRLLEPSGGKI 247
             VDIKDLQVRYRPNTPL+LKGITLSI GGEKIGVVGRTGSGKSTLIQ  FRL+EP+GGKI
Sbjct: 1258 HVDIKDLQVRYRPNTPLVLKGITLSINGGEKIGVVGRTGSGKSTLIQVFFRLVEPTGGKI 1317

Query: 246  VIDGIDISTLGLHDLRSRFGIIPQEPVLFQGTIRSNIDPTGLYSDEEIWRSLERCQLKDV 67
            +IDGIDIS LGLHDLRSRFGIIPQEPVLF+GT+RSNIDPTG Y+DEEIW+SLERCQLKD 
Sbjct: 1318 IIDGIDISALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDEEIWKSLERCQLKDA 1377

Query: 66   VMAKPDKLDASVVDSGDNWSVG 1
            V +KP+KLD SVVD+GDNWSVG
Sbjct: 1378 VASKPEKLDTSVVDNGDNWSVG 1399


>emb|CBI36841.3| unnamed protein product [Vitis vinifera]
          Length = 1079

 Score =  342 bits (878), Expect = 2e-92
 Identities = 160/202 (79%), Positives = 184/202 (91%)
 Frame = -1

Query: 606  LSLSYGLSLNGVLFYAVYMSCFVENRIISVERIKQFINIPSEAPWHIEGCIPSPNWPTHG 427
            LSLSYGLSLN VLF+A+YMSCFVEN+++SVERIKQF NIPSEA W I+  +P PNWPTHG
Sbjct: 776  LSLSYGLSLNSVLFWAIYMSCFVENKMVSVERIKQFTNIPSEAAWQIKDRLPPPNWPTHG 835

Query: 426  DVDIKDLQVRYRPNTPLILKGITLSIQGGEKIGVVGRTGSGKSTLIQALFRLLEPSGGKI 247
            +V++KDLQVRYRPN+PL+LKGITL+I+G EKIGVVGRTGSGKSTL+Q  FRL+EPSGGKI
Sbjct: 836  NVELKDLQVRYRPNSPLVLKGITLNIRGKEKIGVVGRTGSGKSTLVQVFFRLVEPSGGKI 895

Query: 246  VIDGIDISTLGLHDLRSRFGIIPQEPVLFQGTIRSNIDPTGLYSDEEIWRSLERCQLKDV 67
            +IDGIDI  LGLHDLRSRFGIIPQEPVLF+GT+RSN+DP G YSDEEIW+SLE CQLK+V
Sbjct: 896  IIDGIDIGMLGLHDLRSRFGIIPQEPVLFEGTVRSNVDPVGQYSDEEIWQSLEHCQLKEV 955

Query: 66   VMAKPDKLDASVVDSGDNWSVG 1
            V  KPDKLD+ VVD+GDNWSVG
Sbjct: 956  VAGKPDKLDSLVVDNGDNWSVG 977


>ref|XP_002265012.1| PREDICTED: ABC transporter C family member 4-like [Vitis vinifera]
          Length = 1509

 Score =  342 bits (878), Expect = 2e-92
 Identities = 160/202 (79%), Positives = 184/202 (91%)
 Frame = -1

Query: 606  LSLSYGLSLNGVLFYAVYMSCFVENRIISVERIKQFINIPSEAPWHIEGCIPSPNWPTHG 427
            LSLSYGLSLN VLF+A+YMSCFVEN+++SVERIKQF NIPSEA W I+  +P PNWPTHG
Sbjct: 1206 LSLSYGLSLNSVLFWAIYMSCFVENKMVSVERIKQFTNIPSEAAWQIKDRLPPPNWPTHG 1265

Query: 426  DVDIKDLQVRYRPNTPLILKGITLSIQGGEKIGVVGRTGSGKSTLIQALFRLLEPSGGKI 247
            +V++KDLQVRYRPN+PL+LKGITL+I+G EKIGVVGRTGSGKSTL+Q  FRL+EPSGGKI
Sbjct: 1266 NVELKDLQVRYRPNSPLVLKGITLNIRGKEKIGVVGRTGSGKSTLVQVFFRLVEPSGGKI 1325

Query: 246  VIDGIDISTLGLHDLRSRFGIIPQEPVLFQGTIRSNIDPTGLYSDEEIWRSLERCQLKDV 67
            +IDGIDI  LGLHDLRSRFGIIPQEPVLF+GT+RSN+DP G YSDEEIW+SLE CQLK+V
Sbjct: 1326 IIDGIDIGMLGLHDLRSRFGIIPQEPVLFEGTVRSNVDPVGQYSDEEIWQSLEHCQLKEV 1385

Query: 66   VMAKPDKLDASVVDSGDNWSVG 1
            V  KPDKLD+ VVD+GDNWSVG
Sbjct: 1386 VAGKPDKLDSLVVDNGDNWSVG 1407


>ref|XP_002523063.1| multidrug resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative [Ricinus communis]
            gi|223537625|gb|EEF39248.1| multidrug
            resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative [Ricinus communis]
          Length = 1506

 Score =  342 bits (876), Expect = 4e-92
 Identities = 163/202 (80%), Positives = 183/202 (90%)
 Frame = -1

Query: 606  LSLSYGLSLNGVLFYAVYMSCFVENRIISVERIKQFINIPSEAPWHIEGCIPSPNWPTHG 427
            LSLSYGLSLNGVLF+A+YMSCFVENR++SVERIKQF NIPSEA W I+  IP P+WP  G
Sbjct: 1203 LSLSYGLSLNGVLFWAIYMSCFVENRMVSVERIKQFTNIPSEAAWKIKDRIPPPSWPAQG 1262

Query: 426  DVDIKDLQVRYRPNTPLILKGITLSIQGGEKIGVVGRTGSGKSTLIQALFRLLEPSGGKI 247
            +VD+KDLQV+YRPNTPL+LKGITLSI GGEKIGVVGRTGSGKSTLIQ  FRL+EP+GGKI
Sbjct: 1263 NVDLKDLQVKYRPNTPLVLKGITLSIYGGEKIGVVGRTGSGKSTLIQVFFRLVEPTGGKI 1322

Query: 246  VIDGIDISTLGLHDLRSRFGIIPQEPVLFQGTIRSNIDPTGLYSDEEIWRSLERCQLKDV 67
            +IDGIDI  LGL DLRSRFGIIPQEPVLF+GT+RSNIDP G Y+DE+IW+SLERCQLKDV
Sbjct: 1323 IIDGIDICMLGLQDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDEQIWKSLERCQLKDV 1382

Query: 66   VMAKPDKLDASVVDSGDNWSVG 1
            V AKP+KLDA V D+GDNWSVG
Sbjct: 1383 VAAKPEKLDALVADNGDNWSVG 1404


>ref|XP_002321011.1| multidrug resistance protein ABC transporter family [Populus
            trichocarpa] gi|222861784|gb|EEE99326.1| multidrug
            resistance protein ABC transporter family [Populus
            trichocarpa]
          Length = 1507

 Score =  341 bits (874), Expect = 7e-92
 Identities = 161/202 (79%), Positives = 181/202 (89%)
 Frame = -1

Query: 606  LSLSYGLSLNGVLFYAVYMSCFVENRIISVERIKQFINIPSEAPWHIEGCIPSPNWPTHG 427
            LSLSYGLSLN VLF+ +Y+SCFVENR++SVERIKQF NI SEA W IE  +P PNWP  G
Sbjct: 1204 LSLSYGLSLNSVLFWCIYLSCFVENRMVSVERIKQFTNISSEAAWKIEDRVPPPNWPAIG 1263

Query: 426  DVDIKDLQVRYRPNTPLILKGITLSIQGGEKIGVVGRTGSGKSTLIQALFRLLEPSGGKI 247
            +VD+KDLQVRYRPNTPL+LKGITLSIQGGEKIGVVGRTGSGKST+IQ  FRL+EP+GGKI
Sbjct: 1264 NVDLKDLQVRYRPNTPLVLKGITLSIQGGEKIGVVGRTGSGKSTMIQVFFRLVEPTGGKI 1323

Query: 246  VIDGIDISTLGLHDLRSRFGIIPQEPVLFQGTIRSNIDPTGLYSDEEIWRSLERCQLKDV 67
            +IDGIDI  LGLHDLRSRFGIIPQEPVLF+GT+RSN+DP G Y+DEEIW SLERCQLKDV
Sbjct: 1324 IIDGIDICMLGLHDLRSRFGIIPQEPVLFEGTVRSNVDPVGQYTDEEIWESLERCQLKDV 1383

Query: 66   VMAKPDKLDASVVDSGDNWSVG 1
            V AKP+KLD+ V D+GDNWSVG
Sbjct: 1384 VAAKPEKLDSPVTDNGDNWSVG 1405


Top