BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010660
         (634 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebenn...    95   9e-18
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    93   4e-17
gb|EEE59920.1| hypothetical protein OsJ_12548 [Oryza sativa Japo...    91   1e-16
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi...    91   1e-16
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ...    91   1e-16

>gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis]
          Length = 464

 Score = 95.1 bits (235), Expect = 9e-18
 Identities = 52/191 (27%), Positives = 102/191 (53%), Gaps = 3/191 (1%)
 Frame = +2

Query: 71  LISTKKALKFWNKNVFGNVFQKINLLEKDLLYIHNL---QPTSNNVALEKNILIDLDSXX 241
           L+ +K+ LK WNK VFGN+ Q+ + L +++  + +      T + +  E  ++ + +   
Sbjct: 243 LLYSKEKLKKWNKEVFGNIQQRKDKLVQEIQAVQDFLEHNQTDDLLNKEDVLIKEFEVVL 302

Query: 242 XXXXXXXXXXSRDKDLIVGDRSTKYFHIKTLRHRKFNKIEWLKTDNDKWISSYKAIGQSF 421
                     SR+K + +GDR+TKYFH  T+  R+ N+IE LK D  KW+   + + +  
Sbjct: 303 EQEEIVWFQKSREKWIALGDRNTKYFHTSTIIRRRRNQIEMLKDDEGKWVEEPEELAKMA 362

Query: 422 VSHFDSLLNKDNCNPFSATLTHIHNLFHKSISFENNLDISRIVSTEDIKNTTFSIGGLKS 601
           V ++  L + ++ +   + +  + +     ++ E   D+S+   + D++N+   +G  K+
Sbjct: 363 VEYYQKLYSVEDVD---SIVERLPSAGFTCLTREEISDLSKPFMSIDVENSMRGMGRFKA 419

Query: 602 PGPDGFPAIFY 634
           PGPDG+  +FY
Sbjct: 420 PGPDGYQPVFY 430


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 93.2 bits (230), Expect = 4e-17
 Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 1/191 (0%)
 Frame = +2

Query: 65   KHLISTKKALKFWNKNVFGNVFQKINLLEKDLLYIHNLQPTSNNVALEKNILID-LDSXX 241
            ++L+S  KALK W+K  F N   ++  L  D+  +H   P   +  +  NIL D +    
Sbjct: 881  RNLLSCGKALKMWSKEKFSNPSVQVADLLSDIEKLHQSNPPDAHHQI--NILTDQVTKLW 938

Query: 242  XXXXXXXXXXSRDKDLIVGDRSTKYFHIKTLRHRKFNKIEWLKTDNDKWISSYKAIGQSF 421
                      SR   L +GD+++ +FH  T++ R++NKI  LK D+  W+ S   +   F
Sbjct: 939  TQDEMYWHQRSRVNWLKLGDQNSSFFHQTTIQRRQYNKIVRLKDDHGNWLDSEADVALQF 998

Query: 422  VSHFDSLLNKDNCNPFSATLTHIHNLFHKSISFENNLDISRIVSTEDIKNTTFSIGGLKS 601
            + +F +L   +    +   L  +      +++ E N  +S  VS  ++K   F +G  K+
Sbjct: 999  LDYFTALYQSNGPQQWEEVLDFVDT----AVTAEMNKILSSPVSLLEVKKAVFDLGATKA 1054

Query: 602  PGPDGFPAIFY 634
            PGPDGF  IFY
Sbjct: 1055 PGPDGFSGIFY 1065


>gb|EEE59920.1| hypothetical protein OsJ_12548 [Oryza sativa Japonica Group]
          Length = 1076

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 66/187 (35%), Positives = 93/187 (49%), Gaps = 3/187 (1%)
 Frame = +2

Query: 80  TKKALKFWNKNVFGNVFQKINLLEKDLLYIHN--LQPTSNNVALEKNILIDLDSXXXXXX 253
           T   L  W+K+  GNV +KI  L + L  + N  L  T N V   K    +L+       
Sbjct: 43  TMTKLVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDNEVHSVKK---ELEEMLHREE 99

Query: 254 XXXXXXSRDKDLIVGDRSTKYFHIKTLRHRKFNKIEWLKTDNDKWISSYKAIGQSFVSHF 433
                 SR   L  GD +T+YFH+K     K NKI+ LK ++     + K + +   S F
Sbjct: 100 IWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGSTTMNKKEMKEINRSFF 159

Query: 434 DSLLNKD-NCNPFSATLTHIHNLFHKSISFENNLDISRIVSTEDIKNTTFSIGGLKSPGP 610
             L  KD N NP      ++ N+FH+ IS + N D+ +  + E+I +  F IG LK+PGP
Sbjct: 160 QQLYTKDDNLNP-----VNLLNMFHEKISEQMNADLIKPFTNEEISDALFQIGPLKAPGP 214

Query: 611 DGFPAIF 631
           DGFPA F
Sbjct: 215 DGFPARF 221


>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 66/187 (35%), Positives = 93/187 (49%), Gaps = 3/187 (1%)
 Frame = +2

Query: 80  TKKALKFWNKNVFGNVFQKINLLEKDLLYIHN--LQPTSNNVALEKNILIDLDSXXXXXX 253
           T   L  W+K+  GNV +KI  L + L  + N  L  T N V   K    +L+       
Sbjct: 237 TMTKLVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDNEVHSVKK---ELEEMLHREE 293

Query: 254 XXXXXXSRDKDLIVGDRSTKYFHIKTLRHRKFNKIEWLKTDNDKWISSYKAIGQSFVSHF 433
                 SR   L  GD +T+YFH+K     K NKI+ LK ++     + K + +   S F
Sbjct: 294 IWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGSTTMNKKEMKEISRSFF 353

Query: 434 DSLLNKD-NCNPFSATLTHIHNLFHKSISFENNLDISRIVSTEDIKNTTFSIGGLKSPGP 610
             L  KD N NP      ++ N+FH+ IS + N D+ +  + E+I +  F IG LK+PGP
Sbjct: 354 QQLYTKDDNLNP-----VNLLNMFHEKISEQMNADLIKPFTDEEISDALFQIGPLKAPGP 408

Query: 611 DGFPAIF 631
           DGFPA F
Sbjct: 409 DGFPARF 415


>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 66/187 (35%), Positives = 93/187 (49%), Gaps = 3/187 (1%)
 Frame = +2

Query: 80  TKKALKFWNKNVFGNVFQKINLLEKDLLYIHN--LQPTSNNVALEKNILIDLDSXXXXXX 253
           T   L  W+K+  GNV +KI  L + L  + N  L  T N V   K    +L+       
Sbjct: 262 TMTKLVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDNEVHSVKK---ELEEMLHREE 318

Query: 254 XXXXXXSRDKDLIVGDRSTKYFHIKTLRHRKFNKIEWLKTDNDKWISSYKAIGQSFVSHF 433
                 SR   L  GD +T+YFH+K     K NKI+ LK ++     + K + +   S F
Sbjct: 319 IWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGSTTMNKKEMKEINRSFF 378

Query: 434 DSLLNKD-NCNPFSATLTHIHNLFHKSISFENNLDISRIVSTEDIKNTTFSIGGLKSPGP 610
             L  KD N NP      ++ N+FH+ IS + N D+ +  + E+I +  F IG LK+PGP
Sbjct: 379 QQLYTKDDNLNP-----VNLLNMFHEKISEQMNADLIKPFTNEEISDALFQIGPLKAPGP 433

Query: 611 DGFPAIF 631
           DGFPA F
Sbjct: 434 DGFPARF 440