BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010631
         (203 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28908.3| unnamed protein product [Vitis vinifera]               91   1e-16
ref|NP_171855.1| pentatricopeptide repeat-containing protein [Ar...    86   3e-15
ref|XP_002892169.1| pentatricopeptide repeat-containing protein ...    86   3e-15
gb|ACU28370.1| At1g03560-like protein [Arabidopsis lyrata subsp....    86   3e-15
gb|ACU28367.1| At1g03560-like protein [Arabidopsis lyrata subsp....    86   3e-15

>emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 38/67 (56%), Positives = 53/67 (79%)
 Frame = +3

Query: 3   SNLDEYCSKFFIKLSPTFVTYVLKLDSIKQKPELAYTFFSWCGRQRDYLHRLDTYVVLIE 182
           SNLD YCSKF IKLSP FV +VLK D+I+ KP++A+ FF W G+Q++Y+H+++ YV LI+
Sbjct: 104 SNLDSYCSKFLIKLSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYIHKIECYVSLID 163

Query: 183 ILVLEKD 203
           +L L  D
Sbjct: 164 VLSLSSD 170


>ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
           gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18
           [Arabidopsis thaliana] gi|332189465|gb|AEE27586.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 660

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 36/67 (53%), Positives = 51/67 (76%)
 Frame = +3

Query: 3   SNLDEYCSKFFIKLSPTFVTYVLKLDSIKQKPELAYTFFSWCGRQRDYLHRLDTYVVLIE 182
           SNLD +C KF IKLSP FV++VLK D I++KP++A++FF W  +Q+ Y H L+ YV L++
Sbjct: 101 SNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVD 160

Query: 183 ILVLEKD 203
           +L L KD
Sbjct: 161 VLALAKD 167


>ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338011|gb|EFH68428.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 662

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 36/67 (53%), Positives = 51/67 (76%)
 Frame = +3

Query: 3   SNLDEYCSKFFIKLSPTFVTYVLKLDSIKQKPELAYTFFSWCGRQRDYLHRLDTYVVLIE 182
           SNLD +C KF IKLSP FV++VLK D I++KP++A++FF W  +Q+ Y H L+ YV L++
Sbjct: 101 SNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVD 160

Query: 183 ILVLEKD 203
           +L L KD
Sbjct: 161 VLALAKD 167


>gb|ACU28370.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
           gi|255685764|gb|ACU28371.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
           gi|255685766|gb|ACU28372.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
           gi|255685768|gb|ACU28373.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
           gi|255685772|gb|ACU28375.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
           gi|255685774|gb|ACU28376.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
           gi|255685776|gb|ACU28377.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
          Length = 121

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 36/67 (53%), Positives = 51/67 (76%)
 Frame = +3

Query: 3   SNLDEYCSKFFIKLSPTFVTYVLKLDSIKQKPELAYTFFSWCGRQRDYLHRLDTYVVLIE 182
           SNLD +C KF IKLSP FV++VLK D I++KP++A++FF W  +Q+ Y H L+ YV L++
Sbjct: 38  SNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVD 97

Query: 183 ILVLEKD 203
           +L L KD
Sbjct: 98  VLALAKD 104


>gb|ACU28367.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
           gi|255685760|gb|ACU28369.1| At1g03560-like protein
           [Arabidopsis lyrata subsp. petraea]
          Length = 121

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 36/67 (53%), Positives = 51/67 (76%)
 Frame = +3

Query: 3   SNLDEYCSKFFIKLSPTFVTYVLKLDSIKQKPELAYTFFSWCGRQRDYLHRLDTYVVLIE 182
           SNLD +C KF IKLSP FV++VLK D I++KP++A++FF W  +Q+ Y H L+ YV L++
Sbjct: 38  SNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVD 97

Query: 183 ILVLEKD 203
           +L L KD
Sbjct: 98  VLALAKD 104