BLASTX nr result

ID: Coptis24_contig00010628 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010628
         (1569 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268942.2| PREDICTED: 2-isopropylmalate synthase 2, chl...   385   0.0  
gb|ACF17660.1| putative isopropylmalate synthase [Capsicum annuum]    382   0.0  
gb|ABA26446.1| 2-isopropylmalate synthase 1 [Brassica insularis]      370   0.0  
ref|XP_002530549.1| isopropylmalate synthase, putative [Ricinus ...   379   0.0  
gb|AAW81741.1| Putative 2-isopropylmalate synthase [Brassica ole...   370   0.0  

>ref|XP_002268942.2| PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Vitis
            vinifera]
          Length = 628

 Score =  385 bits (990), Expect(3) = 0.0
 Identities = 192/247 (77%), Positives = 219/247 (88%), Gaps = 1/247 (0%)
 Frame = +3

Query: 516  ERAGNASLEEVVMAIRCRGEELLGGLHTGINTRHIVMASKMVAEFTGLQVQPHKAIVGAN 695
            ERAGNASLEEVVMA++CRGE+ LGGL+TGIN RHIV  SKMVAE++GLQVQPHKAIVGAN
Sbjct: 324  ERAGNASLEEVVMALKCRGEKALGGLYTGINIRHIVKTSKMVAEYSGLQVQPHKAIVGAN 383

Query: 696  AFAHESGIHQDGMLKYKGTYEIMSPEDIGLS*SNDSGIVLGKLSGRHALRSRLLELGYEL 875
            AFAHESGIHQDGMLK+K TYEI+SPEDIGL  SN+SGIVLGKLSGRHAL+SRLLELGYE+
Sbjct: 384  AFAHESGIHQDGMLKHKETYEIISPEDIGLFRSNESGIVLGKLSGRHALKSRLLELGYEI 443

Query: 876  MA-ELDVVFWRFKAVAEKKKHLSDGDIEALISDEIFQPQAIWSLGDLQVICGTLGLSTAT 1052
               ELD +FWRFK VAEKKK+L+D D+ AL+SDEIFQP+  W LGDLQV CGTLGLSTAT
Sbjct: 444  EGMELDDIFWRFKEVAEKKKNLTDVDVIALVSDEIFQPKVFWKLGDLQVTCGTLGLSTAT 503

Query: 1053 VKLIGIDGEEHICCSVGTGPVDAAYRAIDQIVKESVTLLEYSINSVTEGIDAIASTSVLI 1232
            VKLI  DG++H+ CSVGTGPVD+AY+AID +VKE VTLLEY +N+VTEGIDAIA+T VLI
Sbjct: 504  VKLIDADGQKHVACSVGTGPVDSAYKAIDLLVKEQVTLLEYGLNAVTEGIDAIATTRVLI 563

Query: 1233 AGENGHS 1253
             GE  H+
Sbjct: 564  RGEKNHT 570



 Score =  295 bits (754), Expect(3) = 0.0
 Identities = 145/173 (83%), Positives = 159/173 (91%)
 Frame = +2

Query: 2   DDGHVPVICCLARCNKADIDAAWEAVKHAKRPRIHTFIATSEIHLKYKLRKSRDEVIAIA 181
           ++GHVPVIC LARCN+ DI  AWEAVK+AKRPRIHTFIATSEIH+KYKL+KS  EVI IA
Sbjct: 152 ENGHVPVICGLARCNRNDISTAWEAVKYAKRPRIHTFIATSEIHMKYKLKKSEKEVIEIA 211

Query: 182 KEMVSYARSLGCNDVEFSPEDAGRSDREFLYKILEEVIKAGATTLNIPDTVGYTLPNEFG 361
           +EMV YARSLGC+DVEFSPEDAGRS+REFLYKIL EVIKAGATTLNIPDTVGYT+PNEFG
Sbjct: 212 REMVKYARSLGCDDVEFSPEDAGRSEREFLYKILGEVIKAGATTLNIPDTVGYTVPNEFG 271

Query: 362 KLIADIKLNTPGIDDVIISTHCQNDLGLSTANTIERVGAGARQLEVTINGIGE 520
           +LIADIK NTPGI++VIISTHCQNDLGLSTANTI    AGARQ+EVTINGIGE
Sbjct: 272 QLIADIKSNTPGIENVIISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 324



 Score = 65.9 bits (159), Expect(3) = 0.0
 Identities = 33/51 (64%), Positives = 40/51 (78%)
 Frame = +1

Query: 1249 THAITGQTVHRTFSGAGAGMDIVVSSA*DYVSALNKMLDFSRTSKVSGSSN 1401
            T+A+TG+TVHR+FSG GAGMDIVVSS   Y+SALNKML F   SK   S++
Sbjct: 572  TNALTGETVHRSFSGTGAGMDIVVSSVRAYISALNKMLGFKDQSKPKVSAD 622


>gb|ACF17660.1| putative isopropylmalate synthase [Capsicum annuum]
          Length = 602

 Score =  382 bits (981), Expect(3) = 0.0
 Identities = 188/247 (76%), Positives = 224/247 (90%), Gaps = 1/247 (0%)
 Frame = +3

Query: 516  ERAGNASLEEVVMAIRCRGEELLGGLHTGINTRHIVMASKMVAEFTGLQVQPHKAIVGAN 695
            ERAGNASLEEVVMA++CRGE++LGGL+TGINT+HI+M+SKMV E+TGL VQPHKAIVGAN
Sbjct: 299  ERAGNASLEEVVMALKCRGEQVLGGLYTGINTQHILMSSKMVEEYTGLHVQPHKAIVGAN 358

Query: 696  AFAHESGIHQDGMLKYKGTYEIMSPEDIGLS*SNDSGIVLGKLSGRHALRSRLLELGYEL 875
            AFAHESGIHQDGMLK+K TYEIMSPEDIGL+ +N+SGIVLGKLSGRHAL++++LELGYE+
Sbjct: 359  AFAHESGIHQDGMLKHKDTYEIMSPEDIGLNRANESGIVLGKLSGRHALQAKMLELGYEI 418

Query: 876  MA-ELDVVFWRFKAVAEKKKHLSDGDIEALISDEIFQPQAIWSLGDLQVICGTLGLSTAT 1052
               ELD +FWRFK+VAEKKK ++D D+ AL+SDE+FQPQ +W L ++QV CG+LGLSTAT
Sbjct: 419  EGKELDDLFWRFKSVAEKKKKITDDDLIALMSDEVFQPQFVWQLQNVQVTCGSLGLSTAT 478

Query: 1053 VKLIGIDGEEHICCSVGTGPVDAAYRAIDQIVKESVTLLEYSINSVTEGIDAIASTSVLI 1232
            VKLI  DG+EHI CSVGTGPVDAAY+A+D IVK  VTLLEYS+N+VT+GIDAIAST VLI
Sbjct: 479  VKLIDADGKEHISCSVGTGPVDAAYKAVDLIVKIPVTLLEYSMNAVTQGIDAIASTRVLI 538

Query: 1233 AGENGHS 1253
             GENGH+
Sbjct: 539  RGENGHT 545



 Score =  287 bits (735), Expect(3) = 0.0
 Identities = 140/173 (80%), Positives = 156/173 (90%)
 Frame = +2

Query: 2   DDGHVPVICCLARCNKADIDAAWEAVKHAKRPRIHTFIATSEIHLKYKLRKSRDEVIAIA 181
           ++GHVPVIC LARCNK DID AWEAVK+AK+PRIHTFIATSEIH+K+KL+ SRDEVI  A
Sbjct: 127 EEGHVPVICGLARCNKRDIDKAWEAVKYAKKPRIHTFIATSEIHMKFKLKMSRDEVIEKA 186

Query: 182 KEMVSYARSLGCNDVEFSPEDAGRSDREFLYKILEEVIKAGATTLNIPDTVGYTLPNEFG 361
           + MV+YARS+GC DVEFSPEDAGRSD EFLY IL EVIKAGATTLNIPDTVGYT+P EFG
Sbjct: 187 RSMVAYARSIGCQDVEFSPEDAGRSDPEFLYHILGEVIKAGATTLNIPDTVGYTVPEEFG 246

Query: 362 KLIADIKLNTPGIDDVIISTHCQNDLGLSTANTIERVGAGARQLEVTINGIGE 520
           +LIA+IK NTPG++DVIISTHCQNDLGLSTANT+    AGARQLEVTINGIGE
Sbjct: 247 QLIANIKANTPGVEDVIISTHCQNDLGLSTANTLAGACAGARQLEVTINGIGE 299



 Score = 64.7 bits (156), Expect(3) = 0.0
 Identities = 31/55 (56%), Positives = 41/55 (74%), Gaps = 4/55 (7%)
 Frame = +1

Query: 1246 ATHAITGQTVHRTFSGAGAGMDIVVSSA*DYVSALNKMLDF----SRTSKVSGSS 1398
            +THA+TG+TVHRTFSG GA MDIV+SS   Y+ ALNKM+ F    ++ +K  GS+
Sbjct: 546  STHALTGETVHRTFSGTGADMDIVISSVRAYIGALNKMMSFRKLLAKNTKAEGSA 600


>gb|ABA26446.1| 2-isopropylmalate synthase 1 [Brassica insularis]
          Length = 623

 Score =  370 bits (951), Expect(3) = 0.0
 Identities = 181/247 (73%), Positives = 215/247 (87%), Gaps = 1/247 (0%)
 Frame = +3

Query: 516  ERAGNASLEEVVMAIRCRGEELLGGLHTGINTRHIVMASKMVAEFTGLQVQPHKAIVGAN 695
            ERAGNASLEEVVMAI+CRG+ +LGGL+TGI+TRHIVM SKMV ++TG+Q QPHKAIVGAN
Sbjct: 319  ERAGNASLEEVVMAIKCRGDHVLGGLYTGIDTRHIVMTSKMVEDYTGMQTQPHKAIVGAN 378

Query: 696  AFAHESGIHQDGMLKYKGTYEIMSPEDIGLS*SNDSGIVLGKLSGRHALRSRLLELGYEL 875
            AFAHESGIHQDGMLK+KGTYEI+ PE+IGL  SND+GIVLGKLSGRHAL+ RL ELGY L
Sbjct: 379  AFAHESGIHQDGMLKHKGTYEIICPEEIGLERSNDAGIVLGKLSGRHALKDRLTELGYVL 438

Query: 876  MAE-LDVVFWRFKAVAEKKKHLSDGDIEALISDEIFQPQAIWSLGDLQVICGTLGLSTAT 1052
              E L  +FWRFK+VAE+KK ++D DI AL+SDE+FQP+A+W L D+Q+ CGTLGLSTAT
Sbjct: 439  DDEQLSSIFWRFKSVAERKKRVTDADIIALVSDEVFQPEALWKLLDIQITCGTLGLSTAT 498

Query: 1053 VKLIGIDGEEHICCSVGTGPVDAAYRAIDQIVKESVTLLEYSINSVTEGIDAIASTSVLI 1232
            VKL   DG+EH+ CS+GTGPVD+AY+A+D IVKE  TLLEYS+N+VTEGIDAIA+T VLI
Sbjct: 499  VKLADADGKEHVACSMGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTEGIDAIATTRVLI 558

Query: 1233 AGENGHS 1253
             G N +S
Sbjct: 559  RGNNNYS 565



 Score =  286 bits (732), Expect(3) = 0.0
 Identities = 139/172 (80%), Positives = 158/172 (91%)
 Frame = +2

Query: 5   DGHVPVICCLARCNKADIDAAWEAVKHAKRPRIHTFIATSEIHLKYKLRKSRDEVIAIAK 184
           DG+VPVIC L+RCNK DI+ AWEAVK+AKRPRIHTFIATS+IHL+YKL+KS+DEVI IA+
Sbjct: 148 DGYVPVICGLSRCNKRDIETAWEAVKYAKRPRIHTFIATSDIHLEYKLKKSKDEVIEIAR 207

Query: 185 EMVSYARSLGCNDVEFSPEDAGRSDREFLYKILEEVIKAGATTLNIPDTVGYTLPNEFGK 364
            MV +ARSLGC DVEFSPEDAGRS+REFLY+IL EVIKAGATTLNIPDTVG TLP+EFG+
Sbjct: 208 NMVKFARSLGCEDVEFSPEDAGRSEREFLYQILGEVIKAGATTLNIPDTVGITLPSEFGQ 267

Query: 365 LIADIKLNTPGIDDVIISTHCQNDLGLSTANTIERVGAGARQLEVTINGIGE 520
           LIADIK NTPGI++VIISTHCQNDLGLSTANT+    +GARQ+EVTINGIGE
Sbjct: 268 LIADIKANTPGIENVIISTHCQNDLGLSTANTLSGAHSGARQVEVTINGIGE 319



 Score = 64.3 bits (155), Expect(3) = 0.0
 Identities = 34/53 (64%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
 Frame = +1

Query: 1249 THAITGQTVHRTFSGAGAGMDIVVSSA*DYVSALNKMLDF--SRTSKVSGSSN 1401
            T+AITG+ V RTFSG GAGMDIVVSS   YV ALNKMLDF  + T+K+   +N
Sbjct: 567  TNAITGEEVQRTFSGTGAGMDIVVSSVKAYVGALNKMLDFKENSTTKIPSQNN 619


>ref|XP_002530549.1| isopropylmalate synthase, putative [Ricinus communis]
            gi|223529911|gb|EEF31840.1| isopropylmalate synthase,
            putative [Ricinus communis]
          Length = 632

 Score =  379 bits (973), Expect(3) = 0.0
 Identities = 189/247 (76%), Positives = 214/247 (86%), Gaps = 1/247 (0%)
 Frame = +3

Query: 516  ERAGNASLEEVVMAIRCRGEELLGGLHTGINTRHIVMASKMVAEFTGLQVQPHKAIVGAN 695
            ERAGNASLEEVVMAI+CRGE +LGGL+TGIN R I MASKMV E+TGL +QPHKAIVGAN
Sbjct: 326  ERAGNASLEEVVMAIKCRGEHILGGLYTGINPRQITMASKMVEEYTGLHLQPHKAIVGAN 385

Query: 696  AFAHESGIHQDGMLKYKGTYEIMSPEDIGLS*SNDSGIVLGKLSGRHALRSRLLELGYEL 875
            AFAHESGIHQDGMLK+KGTYEI+SPEDIGL  SND+GIVLGKLSGRHAL+ RL ELGYEL
Sbjct: 386  AFAHESGIHQDGMLKHKGTYEIISPEDIGLERSNDAGIVLGKLSGRHALKDRLKELGYEL 445

Query: 876  MAE-LDVVFWRFKAVAEKKKHLSDGDIEALISDEIFQPQAIWSLGDLQVICGTLGLSTAT 1052
              E L  +FWRFKAVAE KK ++D D+ AL+SDE+FQP+ +W LGDLQV CGTLGLSTAT
Sbjct: 446  NDEQLGTIFWRFKAVAETKKRVTDADLIALVSDEVFQPEIVWKLGDLQVTCGTLGLSTAT 505

Query: 1053 VKLIGIDGEEHICCSVGTGPVDAAYRAIDQIVKESVTLLEYSINSVTEGIDAIASTSVLI 1232
            VKLI  DGEEHI CSVG+GPVDA Y+A+D IVKE V LLEYS+N+VTEGIDAIA+T VLI
Sbjct: 506  VKLINADGEEHIACSVGSGPVDAGYKAVDLIVKEPVELLEYSMNAVTEGIDAIATTRVLI 565

Query: 1233 AGENGHS 1253
              E+ H+
Sbjct: 566  RREDNHT 572



 Score =  283 bits (725), Expect(3) = 0.0
 Identities = 139/173 (80%), Positives = 156/173 (90%)
 Frame = +2

Query: 2   DDGHVPVICCLARCNKADIDAAWEAVKHAKRPRIHTFIATSEIHLKYKLRKSRDEVIAIA 181
           +DG+VPVIC L+RCN+ DI  AWEAVK+AKRPRIHTFIATS IH++YKLRKS++EV+ IA
Sbjct: 154 EDGYVPVICGLSRCNEKDIRTAWEAVKYAKRPRIHTFIATSAIHMEYKLRKSKEEVVEIA 213

Query: 182 KEMVSYARSLGCNDVEFSPEDAGRSDREFLYKILEEVIKAGATTLNIPDTVGYTLPNEFG 361
           + MV +ARSLGC+DVEFSPEDAGRSDREFLY IL EVIKAGATTLNIPDTVG TLP+EFG
Sbjct: 214 RSMVKFARSLGCDDVEFSPEDAGRSDREFLYHILGEVIKAGATTLNIPDTVGITLPSEFG 273

Query: 362 KLIADIKLNTPGIDDVIISTHCQNDLGLSTANTIERVGAGARQLEVTINGIGE 520
           +LIADIK NTPGID VIISTHCQNDLGLSTANT+    AGARQ+EVTINGIGE
Sbjct: 274 QLIADIKANTPGIDKVIISTHCQNDLGLSTANTLAGAYAGARQVEVTINGIGE 326



 Score = 58.2 bits (139), Expect(3) = 0.0
 Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 3/53 (5%)
 Frame = +1

Query: 1246 ATHAITGQTVHRTFSGAGAGMDIVVSSA*DYVSALNKMLDFSR---TSKVSGS 1395
            +THA+TG+   RTFSG+GAGMDIVVSS   YV ALNKML   +   T +VS +
Sbjct: 573  STHALTGEPFQRTFSGSGAGMDIVVSSVKAYVGALNKMLALKQQFLTKRVSST 625


>gb|AAW81741.1| Putative 2-isopropylmalate synthase [Brassica oleracea]
          Length = 623

 Score =  370 bits (951), Expect(3) = 0.0
 Identities = 181/247 (73%), Positives = 215/247 (87%), Gaps = 1/247 (0%)
 Frame = +3

Query: 516  ERAGNASLEEVVMAIRCRGEELLGGLHTGINTRHIVMASKMVAEFTGLQVQPHKAIVGAN 695
            ERAGNASLEEVVMAI+CRG+ +LGGL+TGI+TRHIVM SKMV ++TG+Q QPHKAIVGAN
Sbjct: 319  ERAGNASLEEVVMAIKCRGDHVLGGLYTGIDTRHIVMTSKMVEDYTGMQTQPHKAIVGAN 378

Query: 696  AFAHESGIHQDGMLKYKGTYEIMSPEDIGLS*SNDSGIVLGKLSGRHALRSRLLELGYEL 875
            AFAHESGIHQDGMLK+KGTYEI+ PE+IGL  SND+GIVLGKLSGRHAL+ RL ELGY L
Sbjct: 379  AFAHESGIHQDGMLKHKGTYEIICPEEIGLERSNDAGIVLGKLSGRHALKDRLTELGYVL 438

Query: 876  MAE-LDVVFWRFKAVAEKKKHLSDGDIEALISDEIFQPQAIWSLGDLQVICGTLGLSTAT 1052
              E L  +FWRFK+VAE+KK ++D DI AL+SDE+FQP+A+W L D+Q+ CGTLGLSTAT
Sbjct: 439  DDEQLSSIFWRFKSVAERKKRVTDADIIALVSDEVFQPEALWKLLDIQITCGTLGLSTAT 498

Query: 1053 VKLIGIDGEEHICCSVGTGPVDAAYRAIDQIVKESVTLLEYSINSVTEGIDAIASTSVLI 1232
            VKL   DG+EH+ CS+GTGPVD+AY+A+D IVKE  TLLEYS+N+VTEGIDAIA+T VLI
Sbjct: 499  VKLADADGKEHVACSMGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTEGIDAIATTRVLI 558

Query: 1233 AGENGHS 1253
             G N +S
Sbjct: 559  RGNNNYS 565



 Score =  285 bits (728), Expect(3) = 0.0
 Identities = 138/172 (80%), Positives = 157/172 (91%)
 Frame = +2

Query: 5   DGHVPVICCLARCNKADIDAAWEAVKHAKRPRIHTFIATSEIHLKYKLRKSRDEVIAIAK 184
           DG+VPVIC L+RCNK DI+ AWEAVK+AKRPRIHTFIATS+IHL+YKL+KS+DEVI  A+
Sbjct: 148 DGYVPVICGLSRCNKRDIETAWEAVKYAKRPRIHTFIATSDIHLEYKLKKSKDEVIEFAR 207

Query: 185 EMVSYARSLGCNDVEFSPEDAGRSDREFLYKILEEVIKAGATTLNIPDTVGYTLPNEFGK 364
            MV +ARSLGC DVEFSPEDAGRS+REFLY+IL EVIKAGATTLNIPDTVG TLP+EFG+
Sbjct: 208 NMVKFARSLGCEDVEFSPEDAGRSEREFLYQILGEVIKAGATTLNIPDTVGITLPSEFGQ 267

Query: 365 LIADIKLNTPGIDDVIISTHCQNDLGLSTANTIERVGAGARQLEVTINGIGE 520
           LIADIK NTPGI++VIISTHCQNDLGLSTANT+    +GARQ+EVTINGIGE
Sbjct: 268 LIADIKANTPGIENVIISTHCQNDLGLSTANTLSGAHSGARQVEVTINGIGE 319



 Score = 64.3 bits (155), Expect(3) = 0.0
 Identities = 34/53 (64%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
 Frame = +1

Query: 1249 THAITGQTVHRTFSGAGAGMDIVVSSA*DYVSALNKMLDF--SRTSKVSGSSN 1401
            T+AITG+ V RTFSG GAGMDIVVSS   YV ALNKMLDF  + T+K+   +N
Sbjct: 567  TNAITGEEVQRTFSGTGAGMDIVVSSVKAYVGALNKMLDFKENTTTKIPSQNN 619


Top