BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010623
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containi...   127   9e-28
emb|CBI20513.3| unnamed protein product [Vitis vinifera]              124   6e-27
ref|XP_002522838.1| pentatricopeptide repeat-containing protein,...   122   4e-26
ref|XP_002319806.1| predicted protein [Populus trichocarpa] gi|2...   119   3e-25
ref|XP_003539564.1| PREDICTED: pentatricopeptide repeat-containi...   113   1e-23

>ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial-like [Vitis vinifera]
          Length = 848

 Score =  127 bits (319), Expect = 9e-28
 Identities = 65/113 (57%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
 Frame = -3

Query: 337 LLQLLEVVDITEVSSRDYVSNIFKSSGRLLMEEFAENLILALKASK-AAEDVSYFITNYA 161
           LL++LE++DIT+VSS DYV++IFKS GRL +  F E  + A KA    AE++S FI  YA
Sbjct: 311 LLKVLEIIDITKVSSVDYVASIFKSLGRLSLASFMEKFVSAFKACDYGAEEISDFIFYYA 370

Query: 160 ISMPNLAVEDVVIKFEDMHKKLDVIPSSKSYEMLIIYSCDSLEVHAALAIIDQ 2
            +MPNLAVEDV++KF+D+H +L V PSS SY  L+ Y CDS +VHAAL I+DQ
Sbjct: 371 SNMPNLAVEDVILKFKDLHAQLVVTPSSTSYNKLVTYCCDSFKVHAALDIVDQ 423


>emb|CBI20513.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  124 bits (312), Expect = 6e-27
 Identities = 65/119 (54%), Positives = 85/119 (71%), Gaps = 7/119 (5%)
 Frame = -3

Query: 337 LLQLLEVVDITEVSSRDYVSNIFKSSGRLLMEEFAENLILALKASKA-------AEDVSY 179
           LL++LE++DIT+VSS DYV++IFKS GRL +  F E  + A KA          AE++S 
Sbjct: 75  LLKVLEIIDITKVSSVDYVASIFKSLGRLSLASFMEKFVSAFKACGTLMIMYYGAEEISD 134

Query: 178 FITNYAISMPNLAVEDVVIKFEDMHKKLDVIPSSKSYEMLIIYSCDSLEVHAALAIIDQ 2
           FI  YA +MPNLAVEDV++KF+D+H +L V PSS SY  L+ Y CDS +VHAAL I+DQ
Sbjct: 135 FIFYYASNMPNLAVEDVILKFKDLHAQLVVTPSSTSYNKLVTYCCDSFKVHAALDIVDQ 193


>ref|XP_002522838.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537922|gb|EEF39536.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 867

 Score =  122 bits (305), Expect = 4e-26
 Identities = 63/113 (55%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
 Frame = -3

Query: 337 LLQLLEVVDITEVSSRDYVSNIFKSSGRLLMEEFAENLILALK-ASKAAEDVSYFITNYA 161
           LLQLLE+VDIT+VSS +++ +IF S GRLL+E  A+  +   K      E++S  I +YA
Sbjct: 340 LLQLLEIVDITKVSSLEHMVSIFNSLGRLLLESLAKKFLSTFKECDYDTENISTLIFSYA 399

Query: 160 ISMPNLAVEDVVIKFEDMHKKLDVIPSSKSYEMLIIYSCDSLEVHAALAIIDQ 2
            S+PNLAVED ++KF+++H  L++ PSSKSYE LIIYSCD L+VHAAL I+DQ
Sbjct: 400 TSVPNLAVEDAILKFKNLHVMLEMPPSSKSYEKLIIYSCDLLKVHAALDIVDQ 452


>ref|XP_002319806.1| predicted protein [Populus trichocarpa] gi|222858182|gb|EEE95729.1|
           predicted protein [Populus trichocarpa]
          Length = 784

 Score =  119 bits (297), Expect = 3e-25
 Identities = 61/113 (53%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
 Frame = -3

Query: 337 LLQLLEVVDITEVSSRDYVSNIFKSSGRLLMEEFAENLILALKASK-AAEDVSYFITNYA 161
           LLQLLE +DIT+ SS D++++IFKS GRL +E FA+  +L LK+    AED+S  I +YA
Sbjct: 246 LLQLLETMDITKFSSLDHLASIFKSLGRLSLESFAKKFLLVLKSCDYGAEDISTLIFSYA 305

Query: 160 ISMPNLAVEDVVIKFEDMHKKLDVIPSSKSYEMLIIYSCDSLEVHAALAIIDQ 2
            S+PNL VEDVV KF+ +H  + + PSS SYE L++Y+C+ L+VH AL I+DQ
Sbjct: 306 TSIPNLVVEDVVSKFKTLHMIMKMSPSSTSYEKLVVYNCNLLKVHLALDIVDQ 358


>ref|XP_003539564.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial [Glycine max]
          Length = 755

 Score =  113 bits (283), Expect = 1e-23
 Identities = 54/113 (47%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
 Frame = -3

Query: 337 LLQLLEVVDITEVSSRDYVSNIFKSSGRLLMEEFAENLILALKASK-AAEDVSYFITNYA 161
           +L+LLE++DI  +SS + V+ +F++ GRLL+E  AE  +L  K S   A++++ FI +YA
Sbjct: 297 ILKLLEIIDIKNLSSAESVAKVFQALGRLLLEPVAEKFLLDFKTSDHEADNITDFIASYA 356

Query: 160 ISMPNLAVEDVVIKFEDMHKKLDVIPSSKSYEMLIIYSCDSLEVHAALAIIDQ 2
           +S+P+L+V+DV+ KF+D+H++L+V PSS SYE LI++SC  L+VH AL I+D+
Sbjct: 357 VSIPDLSVKDVIKKFKDLHQRLEVSPSSSSYEKLILHSCALLKVHVALDIVDE 409