BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010615
         (1019 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...   207   3e-51
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   201   2e-49
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   200   5e-49
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   197   3e-48
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   195   1e-47

>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score =  207 bits (527), Expect = 3e-51
 Identities = 121/344 (35%), Positives = 189/344 (54%), Gaps = 7/344 (2%)
 Frame = -1

Query: 1013 KLKNLKLILKGWSKIHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINEKASRLACRD 834
            KLK LK  L+G +K     L +RT EA             +P+   + I  +A     R 
Sbjct: 705  KLKALKPKLRGLAKEKMGNLVKRTREAYLSLCQAQQSNSQNPSQRAMEIESEAYVRWDR- 763

Query: 833  LLEMEYEDIRQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDG-LKVTDDHVK- 660
            +  +E + ++Q S   W+  GD+  + FH     + A+N I  +  EDG    T D +K 
Sbjct: 764  IASIEEKYLKQVSKLHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTKDDIKN 823

Query: 659  --PKIVEHYTKLLGEDK---TIRNESIIPQLHVSNVVEPNLVCTLEEDIHEEEIRRALFD 495
               +  + + +L+  D    T+   + +   H S   +  L  +    +  +EIR ALF 
Sbjct: 824  ETERFFQEFLQLIPNDYEGITVEKLTSLLPYHCSPAEKDMLTAS----VSAKEIRGALFS 879

Query: 494  MDNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKIPNP* 315
            M N K+PGPD Y + FYK  W I G +F+ A+K  F    +PKG+N+T + L PK     
Sbjct: 880  MPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAK 939

Query: 314  KITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHELLRS 135
            ++ DYRPI+CCN+ YK  +K+I+NRLK ++P  ++ NQSAF+ +R + ENLLL+ EL++ 
Sbjct: 940  EMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKD 999

Query: 134  YNRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRW 3
            Y++  IS RC++K+DISKA+DSV    ++ +L  L FP + + W
Sbjct: 1000 YHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDFPPEFVHW 1043


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  201 bits (511), Expect = 2e-49
 Identities = 118/349 (33%), Positives = 191/349 (54%), Gaps = 12/349 (3%)
 Frame = -1

Query: 1013 KLKNLKLILKGWSKIHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINEKASRLACRD 834
            KLK LK +L+   K     L ++T+EA             +P+ S +   E  +      
Sbjct: 178  KLKGLKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSMQ-EENEAYAKWDH 236

Query: 833  LLEMEYEDIRQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGLKVT-DDHVKP 657
            +  +E + ++QRS   W+  GDR  + FH  +  ++A+N I  +   DG   + ++ +K 
Sbjct: 237  IAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKT 296

Query: 656  KIVEHYTKLLGEDKTIRNESIIPQLHVSNVVEP--NLV---CT------LEEDIHEEEIR 510
            +   H+ + L          +IP       VE   +L+   C+      L   +  EEI 
Sbjct: 297  EAEHHFREFL---------QLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIH 347

Query: 509  RALFDMDNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPK 330
            + +F M N K+PGPD Y A FYK  W+I G +FI A++  F    +PKG+NST + L PK
Sbjct: 348  KVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPK 407

Query: 329  IPNP*KITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSH 150
                 ++ DYRPI+CCN+ YK  +K+I+NRLK ++P  +  NQSAF+ +R + EN+LL+ 
Sbjct: 408  KKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLAT 467

Query: 149  ELLRSYNRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRW 3
            E+++ Y++ ++S+RC+LK+DISKA+DSV  K +  +L  + FP +   W
Sbjct: 468  EIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHW 516


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  200 bits (508), Expect = 5e-49
 Identities = 116/343 (33%), Positives = 186/343 (54%), Gaps = 7/343 (2%)
 Frame = -1

Query: 1010 LKNLKLILKGWSKIHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINEKASRLACRDL 831
            LK LK  ++  ++     LS++  EA             +P+ S+ M  E A+      +
Sbjct: 291  LKGLKPKIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPS-SMAMEEENAAYSRWDRV 349

Query: 830  LEMEYEDIRQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGL-KVTDDHVKPK 654
              +E + ++Q+S   W   GD+ T+ FH     ++A N I  +   DG+ K   D +K +
Sbjct: 350  AILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAE 409

Query: 653  IVEHYTKLLG------EDKTIRNESIIPQLHVSNVVEPNLVCTLEEDIHEEEIRRALFDM 492
                + + L       E  TI     +  +  S+  + +L+      +  EEIR+ LF M
Sbjct: 410  AERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLI----RPVTAEEIRKVLFRM 465

Query: 491  DNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKIPNP*K 312
             + K+PGPD Y + F+K  W I G +F  A++  F    +PKG+NST + L PK     +
Sbjct: 466  PSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEARE 525

Query: 311  ITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHELLRSY 132
            + DYRPI+CCN+ YK  +K+I+NRLK ++P  ++ NQSAF+ +R + ENLLL+ EL++ Y
Sbjct: 526  MKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDY 585

Query: 131  NRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRW 3
            ++  ISTRC++K+DISKA+DSV    +  +   L FP + I W
Sbjct: 586  HKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHW 628


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  197 bits (501), Expect = 3e-48
 Identities = 115/343 (33%), Positives = 184/343 (53%), Gaps = 6/343 (1%)
 Frame = -1

Query: 1013 KLKNLKLILKGWSKIHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINEKASRLACRD 834
            KLK LK  L+   K     L +RT EA             +P+   +    KA       
Sbjct: 587  KLKTLKPHLRELGKEKLGDLPKRTREAHILLCEKQATTLANPSQETIAEELKAYT-DWTH 645

Query: 833  LLEMEYEDIRQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGLKV-TDDHVKP 657
            L E+E   ++Q+S   WM  GD    +FH   + +K RN I  +   +   + T + +K 
Sbjct: 646  LSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKG 705

Query: 656  KIVEHYTKLLGEDKTIRNESIIPQL-----HVSNVVEPNLVCTLEEDIHEEEIRRALFDM 492
            +    + + L       +   +  L     +  +V + N+   L  ++  EEI++ LF M
Sbjct: 706  EAERFFNEFLNRQSGDFHGISVEDLRNLMSYRCSVTDQNI---LTREVTGEEIQKVLFAM 762

Query: 491  DNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKIPNP*K 312
             N K+PGPD Y + F+K  WS+ G DFIAA++  F    +PKG+N+T + L PK     +
Sbjct: 763  PNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIE 822

Query: 311  ITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHELLRSY 132
            + DYRPI+CCN+ YK  +K+++NRLK ++P  +  NQSAF+ ER + EN+LL+ EL++ Y
Sbjct: 823  MKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDY 882

Query: 131  NRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRW 3
            ++++++ RC++K+DISKA+DSV  + +   L  L FP     W
Sbjct: 883  HKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHW 925


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  195 bits (496), Expect = 1e-47
 Identities = 103/272 (37%), Positives = 168/272 (61%), Gaps = 5/272 (1%)
 Frame = -1

Query: 803 QRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGLKVTDDH--VKPKIVEHYTKL 630
           Q+S   W+  GD  T+FFH   KE++ +N I  L  EDG ++ D H  +K +I   Y KL
Sbjct: 29  QKSRANWIQLGDSNTKFFHAYAKERRCQNNIKFLITEDGTRI-DKHNLIKEEIRGFYLKL 87

Query: 629 LG---EDKTIRNESIIPQLHVSNVVEPNLVCTLEEDIHEEEIRRALFDMDNYKAPGPDSY 459
           +G   +   + +++++ +  + +  + +L+C+    +   E++  LF MD+ KAPG D Y
Sbjct: 88  MGSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAV---EVKNVLFSMDSSKAPGIDGY 144

Query: 458 NAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKIPNP*KITDYRPIACCN 279
           N  F+K  W+I G   I A+   F +  MPK +N T++ L PK  N   + ++RPIACC+
Sbjct: 145 NVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCS 204

Query: 278 ISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHELLRSYNRKNISTRCSL 99
           + YK  +K++++R++ ++  VVS NQSAF+  R I +N++LSHEL++SY+RK IS RC +
Sbjct: 205 VIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMV 264

Query: 98  KVDISKAYDSVC*KAIEEMLLRLRFPLKLIRW 3
           K+D+ KAY+SV    I+ ++L L F  K + W
Sbjct: 265 KIDLQKAYNSVEWPFIKHLMLELGFSYKFVNW 296