BLASTX nr result
ID: Coptis24_contig00010615
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00010615 (1019 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 207 3e-51 gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 201 2e-49 dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 200 5e-49 gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 197 3e-48 gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 195 1e-47 >gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1449 Score = 207 bits (527), Expect = 3e-51 Identities = 121/344 (35%), Positives = 189/344 (54%), Gaps = 7/344 (2%) Frame = -1 Query: 1013 KLKNLKLILKGWSKIHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINEKASRLACRD 834 KLK LK L+G +K L +RT EA +P+ + I +A R Sbjct: 705 KLKALKPKLRGLAKEKMGNLVKRTREAYLSLCQAQQSNSQNPSQRAMEIESEAYVRWDR- 763 Query: 833 LLEMEYEDIRQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDG-LKVTDDHVK- 660 + +E + ++Q S W+ GD+ + FH + A+N I + EDG T D +K Sbjct: 764 IASIEEKYLKQVSKLHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTKDDIKN 823 Query: 659 --PKIVEHYTKLLGEDK---TIRNESIIPQLHVSNVVEPNLVCTLEEDIHEEEIRRALFD 495 + + + +L+ D T+ + + H S + L + + +EIR ALF Sbjct: 824 ETERFFQEFLQLIPNDYEGITVEKLTSLLPYHCSPAEKDMLTAS----VSAKEIRGALFS 879 Query: 494 MDNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKIPNP* 315 M N K+PGPD Y + FYK W I G +F+ A+K F +PKG+N+T + L PK Sbjct: 880 MPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAK 939 Query: 314 KITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHELLRS 135 ++ DYRPI+CCN+ YK +K+I+NRLK ++P ++ NQSAF+ +R + ENLLL+ EL++ Sbjct: 940 EMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKD 999 Query: 134 YNRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRW 3 Y++ IS RC++K+DISKA+DSV ++ +L L FP + + W Sbjct: 1000 YHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDFPPEFVHW 1043 >gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score: 72.31) [Arabidopsis thaliana] Length = 928 Score = 201 bits (511), Expect = 2e-49 Identities = 118/349 (33%), Positives = 191/349 (54%), Gaps = 12/349 (3%) Frame = -1 Query: 1013 KLKNLKLILKGWSKIHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINEKASRLACRD 834 KLK LK +L+ K L ++T+EA +P+ S + E + Sbjct: 178 KLKGLKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSMQ-EENEAYAKWDH 236 Query: 833 LLEMEYEDIRQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGLKVT-DDHVKP 657 + +E + ++QRS W+ GDR + FH + ++A+N I + DG + ++ +K Sbjct: 237 IAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKT 296 Query: 656 KIVEHYTKLLGEDKTIRNESIIPQLHVSNVVEP--NLV---CT------LEEDIHEEEIR 510 + H+ + L +IP VE +L+ C+ L + EEI Sbjct: 297 EAEHHFREFL---------QLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIH 347 Query: 509 RALFDMDNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPK 330 + +F M N K+PGPD Y A FYK W+I G +FI A++ F +PKG+NST + L PK Sbjct: 348 KVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPK 407 Query: 329 IPNP*KITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSH 150 ++ DYRPI+CCN+ YK +K+I+NRLK ++P + NQSAF+ +R + EN+LL+ Sbjct: 408 KKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLAT 467 Query: 149 ELLRSYNRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRW 3 E+++ Y++ ++S+RC+LK+DISKA+DSV K + +L + FP + W Sbjct: 468 EIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHW 516 >dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana] Length = 1223 Score = 200 bits (508), Expect = 5e-49 Identities = 116/343 (33%), Positives = 186/343 (54%), Gaps = 7/343 (2%) Frame = -1 Query: 1010 LKNLKLILKGWSKIHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINEKASRLACRDL 831 LK LK ++ ++ LS++ EA +P+ S+ M E A+ + Sbjct: 291 LKGLKPKIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPS-SMAMEEENAAYSRWDRV 349 Query: 830 LEMEYEDIRQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGL-KVTDDHVKPK 654 +E + ++Q+S W GD+ T+ FH ++A N I + DG+ K D +K + Sbjct: 350 AILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAE 409 Query: 653 IVEHYTKLLG------EDKTIRNESIIPQLHVSNVVEPNLVCTLEEDIHEEEIRRALFDM 492 + + L E TI + + S+ + +L+ + EEIR+ LF M Sbjct: 410 AERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLI----RPVTAEEIRKVLFRM 465 Query: 491 DNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKIPNP*K 312 + K+PGPD Y + F+K W I G +F A++ F +PKG+NST + L PK + Sbjct: 466 PSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEARE 525 Query: 311 ITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHELLRSY 132 + DYRPI+CCN+ YK +K+I+NRLK ++P ++ NQSAF+ +R + ENLLL+ EL++ Y Sbjct: 526 MKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDY 585 Query: 131 NRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRW 3 ++ ISTRC++K+DISKA+DSV + + L FP + I W Sbjct: 586 HKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHW 628 >gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1529 Score = 197 bits (501), Expect = 3e-48 Identities = 115/343 (33%), Positives = 184/343 (53%), Gaps = 6/343 (1%) Frame = -1 Query: 1013 KLKNLKLILKGWSKIHFSRLSERTEEARXXXXXXXXXX*GDPTNSLLMINEKASRLACRD 834 KLK LK L+ K L +RT EA +P+ + KA Sbjct: 587 KLKTLKPHLRELGKEKLGDLPKRTREAHILLCEKQATTLANPSQETIAEELKAYT-DWTH 645 Query: 833 LLEMEYEDIRQRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGLKV-TDDHVKP 657 L E+E ++Q+S WM GD +FH + +K RN I + + + T + +K Sbjct: 646 LSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKG 705 Query: 656 KIVEHYTKLLGEDKTIRNESIIPQL-----HVSNVVEPNLVCTLEEDIHEEEIRRALFDM 492 + + + L + + L + +V + N+ L ++ EEI++ LF M Sbjct: 706 EAERFFNEFLNRQSGDFHGISVEDLRNLMSYRCSVTDQNI---LTREVTGEEIQKVLFAM 762 Query: 491 DNYKAPGPDSYNAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKIPNP*K 312 N K+PGPD Y + F+K WS+ G DFIAA++ F +PKG+N+T + L PK + Sbjct: 763 PNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIE 822 Query: 311 ITDYRPIACCNISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHELLRSY 132 + DYRPI+CCN+ YK +K+++NRLK ++P + NQSAF+ ER + EN+LL+ EL++ Y Sbjct: 823 MKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDY 882 Query: 131 NRKNISTRCSLKVDISKAYDSVC*KAIEEMLLRLRFPLKLIRW 3 ++++++ RC++K+DISKA+DSV + + L L FP W Sbjct: 883 HKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHW 925 >gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 402 Score = 195 bits (496), Expect = 1e-47 Identities = 103/272 (37%), Positives = 168/272 (61%), Gaps = 5/272 (1%) Frame = -1 Query: 803 QRSSCTWMVKGDRCTEFFHNILKEKKARNKIWTLTDEDGLKVTDDH--VKPKIVEHYTKL 630 Q+S W+ GD T+FFH KE++ +N I L EDG ++ D H +K +I Y KL Sbjct: 29 QKSRANWIQLGDSNTKFFHAYAKERRCQNNIKFLITEDGTRI-DKHNLIKEEIRGFYLKL 87 Query: 629 LG---EDKTIRNESIIPQLHVSNVVEPNLVCTLEEDIHEEEIRRALFDMDNYKAPGPDSY 459 +G + + +++++ + + + + +L+C+ + E++ LF MD+ KAPG D Y Sbjct: 88 MGSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAV---EVKNVLFSMDSSKAPGIDGY 144 Query: 458 NAFFYKTCWSIFGGDFIAALKFAFHSNTMPKGMNSTFICLNPKIPNP*KITDYRPIACCN 279 N F+K W+I G I A+ F + MPK +N T++ L PK N + ++RPIACC+ Sbjct: 145 NVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCS 204 Query: 278 ISYKYFAKVISNRLKPIMPLVVSPNQSAFIAERTIQENLLLSHELLRSYNRKNISTRCSL 99 + YK +K++++R++ ++ VVS NQSAF+ R I +N++LSHEL++SY+RK IS RC + Sbjct: 205 VIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMV 264 Query: 98 KVDISKAYDSVC*KAIEEMLLRLRFPLKLIRW 3 K+D+ KAY+SV I+ ++L L F K + W Sbjct: 265 KIDLQKAYNSVEWPFIKHLMLELGFSYKFVNW 296