BLASTX nr result
ID: Coptis24_contig00010556
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00010556
(1904 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285019.2| PREDICTED: auxin response factor 4-like [Vit... 655 0.0
ref|XP_002526369.1| Auxin response factor, putative [Ricinus com... 639 e-180
ref|NP_001233771.1| auxin response factor 4 [Solanum lycopersicu... 602 e-170
ref|XP_003539110.1| PREDICTED: auxin response factor 4-like [Gly... 581 e-163
ref|XP_003540747.1| PREDICTED: auxin response factor 4-like [Gly... 576 e-162
>ref|XP_002285019.2| PREDICTED: auxin response factor 4-like [Vitis vinifera]
gi|297746231|emb|CBI16287.3| unnamed protein product
[Vitis vinifera]
Length = 798
Score = 655 bits (1691), Expect = 0.0
Identities = 342/598 (57%), Positives = 411/598 (68%), Gaps = 31/598 (5%)
Frame = +1
Query: 1 RAAEDCFPPLDYMQQRPSQEIVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSNFVSQKNLV 180
RAAEDCFPPLDY QQRPSQE+VAKDLHGVEWRFRHIYRGQPRRHLLTTGWS FVSQKNLV
Sbjct: 187 RAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLV 246
Query: 181 SGDAVIFLRGEDGELRLGVRRACQSRNSFHNFVSGNKNLHGDVLSAVANAISTKSMFHVF 360
SGDAV+FLRGE GELRLG+RRA + RN + + GN+N + +VLS ANA++TKSMFHVF
Sbjct: 247 SGDAVLFLRGEGGELRLGIRRAVRPRNGLPDSIIGNQNSYPNVLSLAANAVATKSMFHVF 306
Query: 361 YCPRGSLAEYVIPYNKYMKSITHPVTIGTPFKMNLKIEDRAERRCSGIVTGIGDIDPQRW 540
Y PR S AE+VIPY KY+KSIT+P++IGT FKM ++D ERR SG+VTGIGD+DP RW
Sbjct: 307 YSPRASHAEFVIPYQKYVKSITNPISIGTRFKMRYDMDDSPERRSSGVVTGIGDLDPYRW 366
Query: 541 PGSKWRCLKVRWDVDLASSHQEQISPWEIVSSIYKPSLSVPSTTSVKNFRTDLKTPSVEY 720
P SKWRCL VRWD D+ S QE++SPWEI S+ P LS+ S+ +K RT L+
Sbjct: 367 PNSKWRCLMVRWDDDIVSDPQERVSPWEIDPSVSLPPLSIQSSPRLKKLRTSLQATPPNN 426
Query: 721 PITAGADLFMDSDVPMRSSKVLQGQEKLGFSSPHYRGNK--------------------- 837
PI G F+D + +RSSKVLQGQE +GF SP Y +K
Sbjct: 427 PINGGGG-FLDFEESVRSSKVLQGQENVGFVSPLYGCDKVNRSLDFEMQNPSLASTGIEK 485
Query: 838 --------ATLPTYIG-TESARF-QVLQGQEINPLRLLHERAKVNHMAQGNSNLSCNMFN 987
A TY G ES RF +VLQGQEI PLR L ++ N + G NL CN+FN
Sbjct: 486 ANFCEFMRAPPTTYTGFLESDRFPKVLQGQEIGPLRSLAGKSDFNLGSWGKPNLGCNLFN 545
Query: 988 TYHRSYPGFYPLSLGNTGTMYMPFHEGYKTDCDQVRQPYMTSCQAETFKSNISSVKRTLP 1167
Y + P FYPL+ MY P+++ YK D V Y ++ E N SS++ +
Sbjct: 546 MYQKPKPNFYPLASEGIRNMYFPYNDIYKGGQDPVMLSYASNFPRENVPFNPSSIRSGVI 605
Query: 1168 DAGKEEVSNPSPHNFLRVQRPFDNSCTPATHIDTEPQRHKDNIMDGASTGCKLFGFSLNG 1347
+++ P+ +P +N P +++T + KD+ G + GCKLFGFSL G
Sbjct: 606 GTEVRKLNIPNE------PKPPENISAP-PNLETNLKHQKDDTFSGTAAGCKLFGFSLTG 658
Query: 1348 QLPTLNLQNSNRSCTKVHKQGNLVGRAIDLSKLNGYDDLLNELERLFNMEGLLRIPDKGW 1527
+ P + + RSCTKVHKQGNLVGRAIDLS+LNGY DL +ELERLF MEGLLR PDKGW
Sbjct: 659 ETPPNSQNSGKRSCTKVHKQGNLVGRAIDLSRLNGYGDLFSELERLFGMEGLLRDPDKGW 718
Query: 1528 QVVYTDSEDDMMVVGDDPWKEFCKIVSKIHIYTQEEVEKMTIGIGSDDTQSCLEEAPV 1701
Q++YTDSE+DMMVVGDDPW EFC +VSKIHIYTQEEVEKMTIGI SDDTQSCLEEAPV
Sbjct: 719 QILYTDSENDMMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGIISDDTQSCLEEAPV 776
>ref|XP_002526369.1| Auxin response factor, putative [Ricinus communis]
gi|223534328|gb|EEF36040.1| Auxin response factor,
putative [Ricinus communis]
Length = 810
Score = 639 bits (1647), Expect = e-180
Identities = 338/602 (56%), Positives = 408/602 (67%), Gaps = 35/602 (5%)
Frame = +1
Query: 1 RAAEDCFPPLDYMQQRPSQEIVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSNFVSQKNLV 180
RAAEDCFPPLDY QQRPSQE+VAKDLHGVEWRFRHIYRGQPRRHLLTTGWS FVSQKNLV
Sbjct: 179 RAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLV 238
Query: 181 SGDAVIFLRGEDGELRLGVRRACQSRNSFHNFVSGNKNLHGDVLSAVANAISTKSMFHVF 360
SGDAV+FLRGEDGELRLG+RRA + RN + V G +N + VLS VANAISTKSMF+V
Sbjct: 239 SGDAVLFLRGEDGELRLGIRRAVRPRNGLPDSVIGKQNSYPSVLSVVANAISTKSMFNVL 298
Query: 361 YCPRGSLAEYVIPYNKYMKSITHPVTIGTPFKMNLKIEDRAERRCSGIVTGIGDIDPQRW 540
Y PR S A++V+PY KYMKSI +PV IGT FKM +++D ERRCSG+VTGI D++P RW
Sbjct: 299 YSPRASHADFVVPYKKYMKSIMNPVCIGTRFKMRFEMDDSPERRCSGVVTGISDLNPYRW 358
Query: 541 PGSKWRCLKVRWDVDLASSHQEQISPWEIVSSIYKPSLSVPSTTSVKNFRTDLKTPSVEY 720
P SKWRCL VRWD D+ + HQE++SPWEI S+ P LS+ S+ +K RT L+ +
Sbjct: 359 PNSKWRCLMVRWDEDIGNDHQERVSPWEIDPSVSLPPLSIQSSPRLKKLRTSLQATPPDN 418
Query: 721 PITAGADLFMDSDVPMRSSKVLQGQEKLGFSSPHYRGNKATLP----------------- 849
PIT G F+D + RSSKVLQGQE +GF SP Y + P
Sbjct: 419 PITGGGG-FLDFEESGRSSKVLQGQENVGFVSPLYGCDTMNRPPDFEMRSPVHQNLVSTG 477
Query: 850 ---------------TYIG-TESARF-QVLQGQEINPLRLLHERAKVNHMAQGNSNLSCN 978
TY G E+ RF +VLQGQEI PLR L + N A N+ C
Sbjct: 478 REKANIGEITRTRPTTYTGFAETDRFPKVLQGQEICPLRSLTSKGDFNLGAWVKRNVGCG 537
Query: 979 MFNTYHRSYPGFYPLSLGNTGTMYMPFHEGYKTDCDQVRQPYMTSCQAETFKSNISSVKR 1158
FN Y FYPL + +Y P+ + YKT D + Y T+ E F+ S++
Sbjct: 538 SFNMYQAPRRNFYPLGPESLQNVYFPYGDVYKTGQDARMRSYATNFPRENFQFGAPSIQ- 596
Query: 1159 TLPDAGKEEVSNPSPHNFLRVQRPFDNSCTPATHIDTEPQRHKDNIMDGASTGCKLFGFS 1338
++EV P+ + L+ Q P S +PA ++ Q KDN G S+GCKLFGFS
Sbjct: 597 --AGVSRDEVGKPNQLSDLKTQEP--GSASPALGVNLRSQ--KDNSFGGTSSGCKLFGFS 650
Query: 1339 LNGQLPTLNLQNS-NRSCTKVHKQGNLVGRAIDLSKLNGYDDLLNELERLFNMEGLLRIP 1515
L + P N QNS RSCTKVHKQG+LVGRAIDLS+LNGY DLL+ELERLF+MEGLL+ P
Sbjct: 651 LTAESPNPNSQNSGKRSCTKVHKQGSLVGRAIDLSRLNGYSDLLSELERLFSMEGLLQDP 710
Query: 1516 DKGWQVVYTDSEDDMMVVGDDPWKEFCKIVSKIHIYTQEEVEKMTIGIGSDDTQSCLEEA 1695
+KGW+++YTDSE+D+MVVGDDPW EFC +VSKIHIYTQEEVEKMTIG+ DDTQSCL++A
Sbjct: 711 NKGWRILYTDSENDVMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGVIGDDTQSCLDQA 770
Query: 1696 PV 1701
V
Sbjct: 771 HV 772
>ref|NP_001233771.1| auxin response factor 4 [Solanum lycopersicum]
gi|85069287|gb|ABC69715.1| auxin response factor 4
[Solanum lycopersicum]
Length = 811
Score = 602 bits (1553), Expect = e-170
Identities = 329/605 (54%), Positives = 396/605 (65%), Gaps = 39/605 (6%)
Frame = +1
Query: 1 RAAEDCFPPLDYMQQRPSQEIVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSNFVSQKNLV 180
RAAEDCFPPLDY +QRPSQE++AKDLHGVEW+FRHIYRGQPRRHLLTTGWS FVSQKNLV
Sbjct: 196 RAAEDCFPPLDYKEQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLV 255
Query: 181 SGDAVIFLRGEDGELRLGVRRACQSRNSFHNFVSGNKNLHGDVLSAVANAISTKSMFHVF 360
SGDAV+FLRGE G LRLG+RRA + RN + ++ DVLS+VA A+S KS FHVF
Sbjct: 256 SGDAVLFLRGEGGNLRLGIRRAARPRNGLPESIIKSQYSGPDVLSSVATALSAKSTFHVF 315
Query: 361 YCPRGSLAEYVIPYNKYMKSITHPVTIGTPFKMNLKIEDRAERRCSGIVTGIGDIDPQRW 540
Y PR S A++V+PY KY+K+I + +GT FKM ++D ERR SG+VTGI D+DP RW
Sbjct: 316 YSPRASHADFVVPYQKYVKAINSRIPVGTRFKMKFDLDDSPERRYSGVVTGISDMDPFRW 375
Query: 541 PGSKWRCLKVRWDVDLASSHQEQISPWEIVSSIYKPSLSVPSTTSVKNFRTDLKTPSVEY 720
P SKWRCL VRWD D+ S+HQE++SPWEI SS+ P LS+ S+ +K RT + PSV
Sbjct: 376 PNSKWRCLMVRWDEDIMSNHQERVSPWEIDSSVSLPPLSIQSSPRLKKLRTSQQAPSVLD 435
Query: 721 PITAGADLFMDSDVPMRSSKVLQGQEKLGFSSPHYRGNKATLP----------------- 849
AG +D + +RSSKVLQGQE LG SP Y +K P
Sbjct: 436 SHFAGGSALLDFEESIRSSKVLQGQENLGLISPPYGCDKPVRPLDFELQRVARHNLMPNG 495
Query: 850 ----------------TYIG-TESARF-QVLQGQEINPLRLLHERAKVNHMAQGNSNLSC 975
TY G ES RF +VLQGQEI LR L + VN A G C
Sbjct: 496 VENIIVGDFVKTQPPTTYTGFLESNRFPKVLQGQEICSLRSLTGKGDVNFGAWGKPEFGC 555
Query: 976 NMFNTYHRSYPGFYPLSLGNTGTMYMPFHEGYKTDCDQVRQPYMTSCQAETFKSNISSVK 1155
N+F TY R FYPL+ +++P++ Y+ D V Y T+ Q E N +S++
Sbjct: 556 NVFGTYQRPRANFYPLASEGARNVFLPYNAMYRAGQDPVVPSYSTNFQRENPTLNQNSIQ 615
Query: 1156 RTLPDAGKEEVSNPSPHNFLRVQRPFDNSCTPATHIDTEPQRHKDNIMD---GASTGCKL 1326
+ +EEV P F+ QRP P + P+ H N D A CKL
Sbjct: 616 NVV---RREEVGMP---KFVNEQRP------PEMSKVSIPENHFKNENDDSFNAQAPCKL 663
Query: 1327 FGFSLNGQLPTLNLQNS-NRSCTKVHKQGNLVGRAIDLSKLNGYDDLLNELERLFNMEGL 1503
FGFSL + T + Q+S RSCTKVHKQG+LVGRAIDLS+LNGYDDLL ELERLFNME L
Sbjct: 664 FGFSLTKEPSTPSSQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYDDLLVELERLFNMEDL 723
Query: 1504 LRIPDKGWQVVYTDSEDDMMVVGDDPWKEFCKIVSKIHIYTQEEVEKMTIGIGSDDTQSC 1683
LR P+KGW+++YTDSE+DMMVVGDDPW EFC++VSKIHIYTQEEVEKMTI SDDTQSC
Sbjct: 724 LRDPNKGWRILYTDSENDMMVVGDDPWHEFCEVVSKIHIYTQEEVEKMTIEGISDDTQSC 783
Query: 1684 LEEAP 1698
LEEAP
Sbjct: 784 LEEAP 788
>ref|XP_003539110.1| PREDICTED: auxin response factor 4-like [Glycine max]
Length = 791
Score = 581 bits (1497), Expect = e-163
Identities = 323/605 (53%), Positives = 400/605 (66%), Gaps = 38/605 (6%)
Frame = +1
Query: 1 RAAEDCFPPLDYMQQRPSQEIVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSNFVSQKNLV 180
RAAEDCFPPLDY QQRPSQE+VAKDLH VEW+FRHIYRGQPRRHLLTTGWS FVSQKNLV
Sbjct: 185 RAAEDCFPPLDYKQQRPSQELVAKDLHDVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLV 244
Query: 181 SGDAVIFLRGEDGELRLGVRRACQSRNSFHNFVSGNKNLHGDVLSAVANAISTKSMFHVF 360
SGDAV+FLRGE+GELRLG+RRA + RN V G++N + +VLS+VANAISTKS FHVF
Sbjct: 245 SGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAISTKSKFHVF 304
Query: 361 YCPRGSLAEYVIPYNKYMKSITHPVTIGTPFKMNLKIEDRAERR-CSGIVTGIGDIDPQR 537
Y PR S A++V+PY KY+KSI +PV+IGT FKM ++++ ERR CSG++ G D+DP R
Sbjct: 305 YSPRASQADFVVPYQKYVKSIKNPVSIGTRFKMRFEMDESQERRCCSGMLIGTSDLDPYR 364
Query: 538 WPGSKWRCLKVRWDVDLASSHQEQISPWEIVSSIYKPSLSVPSTTSVKNFRTDLKTPSVE 717
WP SKWRCL VRWD D+ ++H++++SPWEI S P LS+ S+ +K RT L+ S
Sbjct: 365 WPKSKWRCLMVRWDEDIETNHKDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPS 424
Query: 718 YPITAGADLFMDSDVPMRSSKVLQGQEKLGFSSPHYRGNKATLP---------------- 849
+ ITA +D + +RS KVLQGQE GF S +Y + T P
Sbjct: 425 HLITARGRGLIDFEESVRSPKVLQGQENAGFGSLYYGCDTVTKPPGFEMSSQSHPNLGSA 484
Query: 850 ----------------TYIG-TESARF-QVLQGQEINPLRLLHERAKVNHMAQGNSNLSC 975
+Y G E+ RF +VLQGQEI PL+ L + +N A G NLSC
Sbjct: 485 EVRKITSSELSSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKVDMNLGAWGMPNLSC 544
Query: 976 NMFNTYHRSYPGFYPLSLGNTGTMYMPFHEGYKTDCDQVRQPYMTSCQAETFKSNISSVK 1155
FN + + P F LSL G D Q Q + ++ TF+
Sbjct: 545 TTFNLHQATKPSF-QLSLFPYG------------DIHQASQASLFCSKSTTFQRENVPFN 591
Query: 1156 RTLPDAG--KEEVSNPSPHNFLRVQRPFDNSCTPATHIDTEPQRHKDNIMDGASTGCKLF 1329
+ AG EV N ++Q N+ + A ++ DN + G CKLF
Sbjct: 592 KPSTQAGIIVNEVGRSDLPNDHKLQ---GNNISAAGNMGVS----IDNNVQGKVNACKLF 644
Query: 1330 GFSLNGQLPTLNLQNS-NRSCTKVHKQGNLVGRAIDLSKLNGYDDLLNELERLFNMEGLL 1506
GFSL+G+ T NLQNS RSCTKVHKQG+LVGRAIDLS+L+GY+DLL+ELERLF+MEGLL
Sbjct: 645 GFSLSGETTTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELERLFSMEGLL 704
Query: 1507 RIPDKGWQVVYTDSEDDMMVVGDDPWKEFCKIVSKIHIYTQEEVEKMTIGIGSDDTQSCL 1686
+ PDKGW+++YTDSE+D+MVVGDDPW EFC +VSKIHIYTQEEVEKMTI + SDDT SCL
Sbjct: 705 KDPDKGWKILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIEMISDDTHSCL 764
Query: 1687 EEAPV 1701
EEAPV
Sbjct: 765 EEAPV 769
>ref|XP_003540747.1| PREDICTED: auxin response factor 4-like [Glycine max]
Length = 791
Score = 576 bits (1485), Expect = e-162
Identities = 318/603 (52%), Positives = 395/603 (65%), Gaps = 36/603 (5%)
Frame = +1
Query: 1 RAAEDCFPPLDYMQQRPSQEIVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSNFVSQKNLV 180
RAAEDCFPPLDY QQRPSQE+VAKDLHGVEW+FRHIYRGQPRRHLLTTGWS FVSQKNLV
Sbjct: 186 RAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLV 245
Query: 181 SGDAVIFLRGEDGELRLGVRRACQSRNSFHNFVSGNKNLHGDVLSAVANAISTKSMFHVF 360
SGDAV+FLRGE+GELRLG+RRA + RN V G++N + +VLS+VANAISTKS FHVF
Sbjct: 246 SGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYSNVLSSVANAISTKSKFHVF 305
Query: 361 YCPRGSLAEYVIPYNKYMKSITHPVTIGTPFKMNLKIEDRAERRC-SGIVTGIGDIDPQR 537
Y PR S A++V+PY KY+KSI +PV+IGT FKM ++++ ERRC SG + D+DP R
Sbjct: 306 YSPRASHADFVVPYQKYVKSIKNPVSIGTRFKMRFEMDESQERRCSSGTLIATSDLDPYR 365
Query: 538 WPGSKWRCLKVRWDVDLASSHQEQISPWEIVSSIYKPSLSVPSTTSVKNFRTDLKTPSVE 717
W SKWRCL VRWD D+ ++HQ+++SPWEI S P LS+ S+ +K RT L+ S
Sbjct: 366 WAKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPS 425
Query: 718 YPITAGADLFMDSDVPMRSSKVLQGQEKLGFSSPHYRGNKATLP---------------- 849
+ ITA + + +RS KVLQGQE GF S +Y + T P
Sbjct: 426 HLITARGSGLVGFEESVRSPKVLQGQENAGFVSFYYGCDTVTKPPGFEMSSPSHPNLGSA 485
Query: 850 ----------------TYIG-TESARF-QVLQGQEINPLRLLHERAKVNHMAQGNSNLSC 975
+Y G E+ RF +VLQGQEI L+ L + +N A G NLSC
Sbjct: 486 EVRKVSSSELNSVHPFSYAGFVETNRFPRVLQGQEICSLKSLTGKVDLNLGAWGMPNLSC 545
Query: 976 NMFNTYHRSYPGFYPLSLGNTGTMYMPFHEGYKTDCDQVRQPYMTSCQAETFKSNISSVK 1155
FN + + P F P SL G D Q Q + ++ TF+ +V
Sbjct: 546 TTFNLHQATKPNFQP-SLFPYG------------DIHQAGQASLFCSKSTTFQR--ENVP 590
Query: 1156 RTLPDAGKEEVSNPSPHNFLRVQRPFDNSCTPATHIDTEPQRHKDNIMDGASTGCKLFGF 1335
P + N + L + ++ + A ++ DN + G CKLFGF
Sbjct: 591 FNKPSTQAGIIVNEVGRSDLPNEHKLQDNISSAANMGVS----NDNNVQGKVNACKLFGF 646
Query: 1336 SLNGQLPTLNLQNS-NRSCTKVHKQGNLVGRAIDLSKLNGYDDLLNELERLFNMEGLLRI 1512
SL+G+ NLQNS RSCTKVHKQG+LVGRAIDLS+L+GY+DLL+ELERLF+MEGLL+
Sbjct: 647 SLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELERLFSMEGLLKD 706
Query: 1513 PDKGWQVVYTDSEDDMMVVGDDPWKEFCKIVSKIHIYTQEEVEKMTIGIGSDDTQSCLEE 1692
PDKGW+++YTDSE+D+MVVGDDPW EFC +VSKIHIYTQEEVEKMTIG+ SDDT SCLEE
Sbjct: 707 PDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMISDDTHSCLEE 766
Query: 1693 APV 1701
APV
Sbjct: 767 APV 769