BLASTX nr result

ID: Coptis24_contig00010553 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010553
         (1315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK92540.1| unknown [Populus trichocarpa]                           74   8e-11
ref|XP_002273372.2| PREDICTED: uncharacterized protein LOC100244...    68   5e-09
emb|CBI23474.3| unnamed protein product [Vitis vinifera]               68   5e-09
ref|XP_002284551.1| PREDICTED: uncharacterized protein LOC100267...    68   6e-09
emb|CAN65070.1| hypothetical protein VITISV_003953 [Vitis vinifera]    67   1e-08

>gb|ABK92540.1| unknown [Populus trichocarpa]
          Length = 354

 Score = 73.9 bits (180), Expect = 8e-11
 Identities = 67/270 (24%), Positives = 110/270 (40%), Gaps = 10/270 (3%)
 Frame = -3

Query: 1196 SLKNVLLSLSTMFMAFILYLYVPVVFEIVVSGVPMLWTTLGLWFTPPYLYVVVNFXXXXX 1017
            SLK +LLS S +F++  L + VP+V +  V+  P+LW+++  W  PPYLYV++N      
Sbjct: 7    SLKVILLSTSVLFLSLCLKISVPLVHDFSVNQAPLLWSSILSWLKPPYLYVIINCIIITI 66

Query: 1016 XASSRFQQKIEGVSKVVATTKTQNDLLRKASFEIDTKNSFEYKMELEAIEPEISGHXXXX 837
             ASSRF       S   A + T +D + K    I        +M++  +E + S      
Sbjct: 67   AASSRFHH-----SHSSANSTTTHDQIEK----IPMDEYLHDEMKISTVEIQTS------ 111

Query: 836  XXXXXXXXXXXXLDXXXXXXXXXXXSAEFEAREPEMYYGYIXXXXXXXXXXXXKPMASKL 657
                                       +++ RE E                    +A   
Sbjct: 112  ----------------HFGGLESRAEIDYQDREEEREEAAHHEQVVIEDKGIVNAVA--- 152

Query: 656  EFEVNKMEGEDEYASSMSRGM-PMNRMDTVE---------IPMDSIHQQDSFAHQAINNE 507
              E +K E  D++  S S  + P  R+D+ E          P++       F H+     
Sbjct: 153  VLEDSKNETVDDFVLSKSTWVPPFKRIDSSENNLLLPDNLSPVEKPLVSSRFGHRKFVKA 212

Query: 506  SPKAGKEQRSLETEANDTMEDTWKMIMESR 417
            SP+ G+  R  + + ++T+E+TWK I E R
Sbjct: 213  SPEGGRALRVAKPKRHETLENTWKTITEGR 242


>ref|XP_002273372.2| PREDICTED: uncharacterized protein LOC100244739 [Vitis vinifera]
          Length = 330

 Score = 68.2 bits (165), Expect = 5e-09
 Identities = 40/115 (34%), Positives = 60/115 (52%)
 Frame = -3

Query: 1235 MATVSNNPIHTIFSLKNVLLSLSTMFMAFILYLYVPVVFEIVVSGVPMLWTTLGLWFTPP 1056
            MA VS +    + SLK  L+S+  + MA IL   +PV+ E  VSGVP++W++   W  PP
Sbjct: 1    MAFVSRSSSTWLLSLKVALISIGVVSMAVILRQSIPVISEFAVSGVPVMWSSFRSWLKPP 60

Query: 1055 YLYVVVNFXXXXXXASSRFQQKIEGVSKVVATTKTQNDLLRKASFEIDTKNSFEY 891
            YLYV++N       ASS+F  ++    +     K   D   +  F  + KN  E+
Sbjct: 61   YLYVIINGIIITIAASSKF-HRMNHQDRPETAAKDPED--ERTEFTYEMKNPPEF 112


>emb|CBI23474.3| unnamed protein product [Vitis vinifera]
          Length = 304

 Score = 68.2 bits (165), Expect = 5e-09
 Identities = 40/115 (34%), Positives = 60/115 (52%)
 Frame = -3

Query: 1235 MATVSNNPIHTIFSLKNVLLSLSTMFMAFILYLYVPVVFEIVVSGVPMLWTTLGLWFTPP 1056
            MA VS +    + SLK  L+S+  + MA IL   +PV+ E  VSGVP++W++   W  PP
Sbjct: 1    MAFVSRSSSTWLLSLKVALISIGVVSMAVILRQSIPVISEFAVSGVPVMWSSFRSWLKPP 60

Query: 1055 YLYVVVNFXXXXXXASSRFQQKIEGVSKVVATTKTQNDLLRKASFEIDTKNSFEY 891
            YLYV++N       ASS+F  ++    +     K   D   +  F  + KN  E+
Sbjct: 61   YLYVIINGIIITIAASSKF-HRMNHQDRPETAAKDPED--ERTEFTYEMKNPPEF 112


>ref|XP_002284551.1| PREDICTED: uncharacterized protein LOC100267532 [Vitis vinifera]
          Length = 320

 Score = 67.8 bits (164), Expect = 6e-09
 Identities = 36/84 (42%), Positives = 50/84 (59%)
 Frame = -3

Query: 1235 MATVSNNPIHTIFSLKNVLLSLSTMFMAFILYLYVPVVFEIVVSGVPMLWTTLGLWFTPP 1056
            MA +S +  +   SLK +L+S   + MA  L + VPVV E  VS VP +W+ +  W  PP
Sbjct: 1    MAILSTDSTNWGLSLKVLLISTGVVSMAVALKISVPVVVEFAVSEVPSIWSFVLSWLRPP 60

Query: 1055 YLYVVVNFXXXXXXASSRFQQKIE 984
            YLY+V+NF      ASS+ Q K+E
Sbjct: 61   YLYLVINFIIIIIVASSKLQHKVE 84


>emb|CAN65070.1| hypothetical protein VITISV_003953 [Vitis vinifera]
          Length = 407

 Score = 67.0 bits (162), Expect = 1e-08
 Identities = 40/115 (34%), Positives = 59/115 (51%)
 Frame = -3

Query: 1235 MATVSNNPIHTIFSLKNVLLSLSTMFMAFILYLYVPVVFEIVVSGVPMLWTTLGLWFTPP 1056
            MA VS +    + SLK  L+S+  + MA IL   +PV+ E  VSGVP+ W++   W  PP
Sbjct: 78   MAFVSRSSSTWLLSLKVALISIGVVSMAVILRQSIPVISEFAVSGVPVXWSSFRSWLKPP 137

Query: 1055 YLYVVVNFXXXXXXASSRFQQKIEGVSKVVATTKTQNDLLRKASFEIDTKNSFEY 891
            YLYV++N       ASS+F  ++    +     K   D   +  F  + KN  E+
Sbjct: 138  YLYVIINGIIITIAASSKF-HRMNHQDRPETAAKDPED--ERTEFTYEMKNPPEF 189


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