BLASTX nr result
ID: Coptis24_contig00010540
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00010540
(1493 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002303507.1| predicted protein [Populus trichocarpa] gi|2... 47 1e-10
ref|XP_003608724.1| hypothetical protein MTR_4g101050 [Medicago ... 45 4e-10
emb|CAN71255.1| hypothetical protein VITISV_043222 [Vitis vinifera] 45 6e-10
ref|XP_002329919.1| predicted protein [Populus trichocarpa] gi|2... 45 1e-09
ref|XP_003608726.1| hypothetical protein MTR_4g101070 [Medicago ... 46 2e-09
>ref|XP_002303507.1| predicted protein [Populus trichocarpa] gi|222840939|gb|EEE78486.1|
predicted protein [Populus trichocarpa]
Length = 753
Score = 46.6 bits (109), Expect(3) = 1e-10
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = -2
Query: 1240 RKKWLLRRPFTLNSVT*TLLPIAAKLPEDLTTPKPRILDQLSKLTGTTLIC 1088
RK W + F++N+ + T++ +A KL DL T PR +DQL+KL+ L+C
Sbjct: 50 RKFWFPSKYFSINATSLTIIAVAVKLSVDLNTAMPRRVDQLAKLSSGALLC 100
Score = 38.1 bits (87), Expect(3) = 1e-10
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 1418 MAKHECS-SGRLGFTKFSSPVPVIGLAIAEVSLVCMFQLSVPVIRYP*KHLLWY 1260
M K C G L KFS P+P IGL IA SL C ++V IR + W+
Sbjct: 1 MGKLGCGIDGNLNEAKFSEPMPWIGLYIAAASLACALAMAVDFIRGFRRRKFWF 54
Score = 28.5 bits (62), Expect(3) = 1e-10
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 1083 IGCFKPSIGTEDNSEC*TNKIALSIFVM 1000
+G PS+G DNS+ TN IAL I V+
Sbjct: 103 MGNSMPSLGAMDNSDLCTNMIALGILVI 130
>ref|XP_003608724.1| hypothetical protein MTR_4g101050 [Medicago truncatula]
gi|355509779|gb|AES90921.1| hypothetical protein
MTR_4g101050 [Medicago truncatula]
Length = 754
Score = 45.4 bits (106), Expect(3) = 4e-10
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = -2
Query: 1240 RKKWLLRRPFTLNSVT*TLLPIAAKLPEDLTTPKPRILDQLSKLTGTTLIC 1088
RK W + F LN+ + T++ ++ KL DL TP P DQL+KL + +IC
Sbjct: 50 RKLWFPCKYFCLNATSLTIIAVSVKLSVDLNTPMPHRHDQLAKLASSAIIC 100
Score = 42.4 bits (98), Expect(3) = 4e-10
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -1
Query: 1418 MAKHECSS-GRLGFTKFSSPVPVIGLAIAEVSLVCMFQLSVPVIRYP*KHLLWYVC 1254
MAK+ C+S G L T FS P+P IG+ IA SL+ + +S +I+ LW+ C
Sbjct: 1 MAKNMCNSEGHLDDTNFSKPMPWIGVYIATASLLSLISMSADLIKGIKTRKLWFPC 56
Score = 23.5 bits (49), Expect(3) = 4e-10
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 1068 PSIGTEDNSEC*TNKIALSIFVM 1000
PS+G NSE N +A++I V+
Sbjct: 108 PSLGVTQNSETMMNVLAMAILVI 130
>emb|CAN71255.1| hypothetical protein VITISV_043222 [Vitis vinifera]
Length = 287
Score = 45.1 bits (105), Expect(3) = 6e-10
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = -2
Query: 1237 KKWLLRRPFTLNSVT*TLLPIAAKLPEDLTTPKPRILDQLSKLTGTTLIC 1088
K W + F+LN + T++ +A L DL T PR DQLSKL+ T L+C
Sbjct: 83 KFWFPCKVFSLNVTSLTIIAVATNLSVDLNTSMPRCQDQLSKLSSTVLMC 132
Score = 35.4 bits (80), Expect(3) = 6e-10
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = -1
Query: 1484 KETLNLHCFCQQRASLDLRD---RKMAKHECS-SGRLGFTKFSSPVPVIGLAIAEVSLVC 1317
K + L+ +QRA R +KM CS G + + F+ P+P IG+ +A SLVC
Sbjct: 8 KNKITLNSVAEQRAIARYRSEGKKKMVWQGCSIHGSVNDSNFNEPMPWIGIYVAAASLVC 67
Query: 1316 MFQLSVPVIRYP*KHLLWYVC 1254
+ W+ C
Sbjct: 68 SLAMGADAFLAFRHTKFWFPC 88
Score = 30.4 bits (67), Expect(3) = 6e-10
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -3
Query: 1083 IGCFKPSIGTEDNSEC*TNKIALSIFVMQGYFHYM*LMSTG 961
+G F PSIGT +N E +N IAL I ++ + M TG
Sbjct: 135 MGNFMPSIGTTENKEVFSNVIALDILMITLMVNVCIKMGTG 175
>ref|XP_002329919.1| predicted protein [Populus trichocarpa] gi|222871156|gb|EEF08287.1|
predicted protein [Populus trichocarpa]
Length = 724
Score = 44.7 bits (104), Expect(3) = 1e-09
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = -2
Query: 1240 RKKWLLRRPFTLNSVT*TLLPIAAKLPEDLTTPKPRILDQLSKLTGTTLIC 1088
+K W + F++N+ + T++ +A KL DL T PR +DQL+KL+ L+C
Sbjct: 50 QKFWFPSKFFSINATSLTIIAVAVKLSVDLNTAMPRRVDQLAKLSSGALLC 100
Score = 36.2 bits (82), Expect(3) = 1e-09
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 1418 MAKHECS-SGRLGFTKFSSPVPVIGLAIAEVSLVCMFQLSVPVIRYP*KHLLWY 1260
M K C G L KFS+P+P IGL IA SL C ++ IR + W+
Sbjct: 1 MGKLGCGIDGGLNEAKFSAPIPWIGLYIAVASLACAIAMAADFIRGFRQQKFWF 54
Score = 28.5 bits (62), Expect(3) = 1e-09
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 1083 IGCFKPSIGTEDNSEC*TNKIALSIFVM 1000
+G PS+GT DN++ TN IAL I V+
Sbjct: 103 MGNSMPSLGTMDNNDLYTNIIALGILVV 130
>ref|XP_003608726.1| hypothetical protein MTR_4g101070 [Medicago truncatula]
gi|355509781|gb|AES90923.1| hypothetical protein
MTR_4g101070 [Medicago truncatula]
Length = 752
Score = 45.8 bits (107), Expect(3) = 2e-09
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = -2
Query: 1240 RKKWLLRRPFTLNSVT*TLLPIAAKLPEDLTTPKPRILDQLSKLTGTTLIC 1088
RK W + F LN+ + T++ ++ KL DL TP P DQL+KL + LIC
Sbjct: 46 RKLWFPCKYFCLNATSLTIIAVSLKLSVDLNTPMPHRHDQLAKLASSALIC 96
Score = 41.2 bits (95), Expect(3) = 2e-09
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -1
Query: 1400 SSGRLGFTKFSSPVPVIGLAIAEVSLVCMFQLSVPVIRYP*KHLLWYVC 1254
S G+L +FS P+P IG+ IA SL+C+ +S +I+ LW+ C
Sbjct: 4 SEGQLDDAQFSKPMPWIGIYIATASLLCLISMSADLIKGIKTRKLWFPC 52
Score = 21.9 bits (45), Expect(3) = 2e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 1068 PSIGTEDNSEC*TNKIALSIFVM 1000
PS+G N+E N +A++I V+
Sbjct: 104 PSLGVTPNNETMLNVLAMAILVV 126