BLASTX nr result

ID: Coptis24_contig00010540 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010540
         (1493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303507.1| predicted protein [Populus trichocarpa] gi|2...    47   1e-10
ref|XP_003608724.1| hypothetical protein MTR_4g101050 [Medicago ...    45   4e-10
emb|CAN71255.1| hypothetical protein VITISV_043222 [Vitis vinifera]    45   6e-10
ref|XP_002329919.1| predicted protein [Populus trichocarpa] gi|2...    45   1e-09
ref|XP_003608726.1| hypothetical protein MTR_4g101070 [Medicago ...    46   2e-09

>ref|XP_002303507.1| predicted protein [Populus trichocarpa] gi|222840939|gb|EEE78486.1|
            predicted protein [Populus trichocarpa]
          Length = 753

 Score = 46.6 bits (109), Expect(3) = 1e-10
 Identities = 21/51 (41%), Positives = 33/51 (64%)
 Frame = -2

Query: 1240 RKKWLLRRPFTLNSVT*TLLPIAAKLPEDLTTPKPRILDQLSKLTGTTLIC 1088
            RK W   + F++N+ + T++ +A KL  DL T  PR +DQL+KL+   L+C
Sbjct: 50   RKFWFPSKYFSINATSLTIIAVAVKLSVDLNTAMPRRVDQLAKLSSGALLC 100



 Score = 38.1 bits (87), Expect(3) = 1e-10
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 1418 MAKHECS-SGRLGFTKFSSPVPVIGLAIAEVSLVCMFQLSVPVIRYP*KHLLWY 1260
            M K  C   G L   KFS P+P IGL IA  SL C   ++V  IR   +   W+
Sbjct: 1    MGKLGCGIDGNLNEAKFSEPMPWIGLYIAAASLACALAMAVDFIRGFRRRKFWF 54



 Score = 28.5 bits (62), Expect(3) = 1e-10
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 1083 IGCFKPSIGTEDNSEC*TNKIALSIFVM 1000
            +G   PS+G  DNS+  TN IAL I V+
Sbjct: 103  MGNSMPSLGAMDNSDLCTNMIALGILVI 130


>ref|XP_003608724.1| hypothetical protein MTR_4g101050 [Medicago truncatula]
            gi|355509779|gb|AES90921.1| hypothetical protein
            MTR_4g101050 [Medicago truncatula]
          Length = 754

 Score = 45.4 bits (106), Expect(3) = 4e-10
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = -2

Query: 1240 RKKWLLRRPFTLNSVT*TLLPIAAKLPEDLTTPKPRILDQLSKLTGTTLIC 1088
            RK W   + F LN+ + T++ ++ KL  DL TP P   DQL+KL  + +IC
Sbjct: 50   RKLWFPCKYFCLNATSLTIIAVSVKLSVDLNTPMPHRHDQLAKLASSAIIC 100



 Score = 42.4 bits (98), Expect(3) = 4e-10
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = -1

Query: 1418 MAKHECSS-GRLGFTKFSSPVPVIGLAIAEVSLVCMFQLSVPVIRYP*KHLLWYVC 1254
            MAK+ C+S G L  T FS P+P IG+ IA  SL+ +  +S  +I+      LW+ C
Sbjct: 1    MAKNMCNSEGHLDDTNFSKPMPWIGVYIATASLLSLISMSADLIKGIKTRKLWFPC 56



 Score = 23.5 bits (49), Expect(3) = 4e-10
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 1068 PSIGTEDNSEC*TNKIALSIFVM 1000
            PS+G   NSE   N +A++I V+
Sbjct: 108  PSLGVTQNSETMMNVLAMAILVI 130


>emb|CAN71255.1| hypothetical protein VITISV_043222 [Vitis vinifera]
          Length = 287

 Score = 45.1 bits (105), Expect(3) = 6e-10
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = -2

Query: 1237 KKWLLRRPFTLNSVT*TLLPIAAKLPEDLTTPKPRILDQLSKLTGTTLIC 1088
            K W   + F+LN  + T++ +A  L  DL T  PR  DQLSKL+ T L+C
Sbjct: 83   KFWFPCKVFSLNVTSLTIIAVATNLSVDLNTSMPRCQDQLSKLSSTVLMC 132



 Score = 35.4 bits (80), Expect(3) = 6e-10
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = -1

Query: 1484 KETLNLHCFCQQRASLDLRD---RKMAKHECS-SGRLGFTKFSSPVPVIGLAIAEVSLVC 1317
            K  + L+   +QRA    R    +KM    CS  G +  + F+ P+P IG+ +A  SLVC
Sbjct: 8    KNKITLNSVAEQRAIARYRSEGKKKMVWQGCSIHGSVNDSNFNEPMPWIGIYVAAASLVC 67

Query: 1316 MFQLSVPVIRYP*KHLLWYVC 1254
               +             W+ C
Sbjct: 68   SLAMGADAFLAFRHTKFWFPC 88



 Score = 30.4 bits (67), Expect(3) = 6e-10
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 1083 IGCFKPSIGTEDNSEC*TNKIALSIFVMQGYFHYM*LMSTG 961
            +G F PSIGT +N E  +N IAL I ++    +    M TG
Sbjct: 135  MGNFMPSIGTTENKEVFSNVIALDILMITLMVNVCIKMGTG 175


>ref|XP_002329919.1| predicted protein [Populus trichocarpa] gi|222871156|gb|EEF08287.1|
            predicted protein [Populus trichocarpa]
          Length = 724

 Score = 44.7 bits (104), Expect(3) = 1e-09
 Identities = 20/51 (39%), Positives = 33/51 (64%)
 Frame = -2

Query: 1240 RKKWLLRRPFTLNSVT*TLLPIAAKLPEDLTTPKPRILDQLSKLTGTTLIC 1088
            +K W   + F++N+ + T++ +A KL  DL T  PR +DQL+KL+   L+C
Sbjct: 50   QKFWFPSKFFSINATSLTIIAVAVKLSVDLNTAMPRRVDQLAKLSSGALLC 100



 Score = 36.2 bits (82), Expect(3) = 1e-09
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 1418 MAKHECS-SGRLGFTKFSSPVPVIGLAIAEVSLVCMFQLSVPVIRYP*KHLLWY 1260
            M K  C   G L   KFS+P+P IGL IA  SL C   ++   IR   +   W+
Sbjct: 1    MGKLGCGIDGGLNEAKFSAPIPWIGLYIAVASLACAIAMAADFIRGFRQQKFWF 54



 Score = 28.5 bits (62), Expect(3) = 1e-09
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 1083 IGCFKPSIGTEDNSEC*TNKIALSIFVM 1000
            +G   PS+GT DN++  TN IAL I V+
Sbjct: 103  MGNSMPSLGTMDNNDLYTNIIALGILVV 130


>ref|XP_003608726.1| hypothetical protein MTR_4g101070 [Medicago truncatula]
            gi|355509781|gb|AES90923.1| hypothetical protein
            MTR_4g101070 [Medicago truncatula]
          Length = 752

 Score = 45.8 bits (107), Expect(3) = 2e-09
 Identities = 22/51 (43%), Positives = 31/51 (60%)
 Frame = -2

Query: 1240 RKKWLLRRPFTLNSVT*TLLPIAAKLPEDLTTPKPRILDQLSKLTGTTLIC 1088
            RK W   + F LN+ + T++ ++ KL  DL TP P   DQL+KL  + LIC
Sbjct: 46   RKLWFPCKYFCLNATSLTIIAVSLKLSVDLNTPMPHRHDQLAKLASSALIC 96



 Score = 41.2 bits (95), Expect(3) = 2e-09
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -1

Query: 1400 SSGRLGFTKFSSPVPVIGLAIAEVSLVCMFQLSVPVIRYP*KHLLWYVC 1254
            S G+L   +FS P+P IG+ IA  SL+C+  +S  +I+      LW+ C
Sbjct: 4    SEGQLDDAQFSKPMPWIGIYIATASLLCLISMSADLIKGIKTRKLWFPC 52



 Score = 21.9 bits (45), Expect(3) = 2e-09
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 1068 PSIGTEDNSEC*TNKIALSIFVM 1000
            PS+G   N+E   N +A++I V+
Sbjct: 104  PSLGVTPNNETMLNVLAMAILVV 126


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