BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010536
         (238 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854...    70   1e-10
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...    70   2e-10
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...    70   2e-10
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...    69   5e-10
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...    67   2e-09

>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
          Length = 493

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 40/78 (51%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
 Frame = -1

Query: 235 MTELENLLLEAAGRTGGPGKNRHSXXXXXXXXXPXXXXXXXXXXXXXXXXXY--TSRKPS 62
           M +LENLLLEAAGRTG  G+NRHS                              +SRKPS
Sbjct: 1   MADLENLLLEAAGRTGTAGRNRHSLPPSRRRREGSYSDDGSDSKDDDSDEDRGYSSRKPS 60

Query: 61  GSQVPLKKRLDPTDKDDD 8
           GSQVPLKKRLDPT++DDD
Sbjct: 61  GSQVPLKKRLDPTERDDD 78


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 40/78 (51%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = -1

Query: 235 MTELENLLLEAAGRTGGPGKNRHSXXXXXXXXXPXXXXXXXXXXXXXXXXXYT--SRKPS 62
           M +LENLLLEAAGRTG  G+NRHS                               SRKPS
Sbjct: 1   MADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 61  GSQVPLKKRLDPTDKDDD 8
           GSQVPLKKRLDPT++DDD
Sbjct: 61  GSQVPLKKRLDPTERDDD 78


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 40/78 (51%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = -1

Query: 235 MTELENLLLEAAGRTGGPGKNRHSXXXXXXXXXPXXXXXXXXXXXXXXXXXYT--SRKPS 62
           M +LENLLLEAAGRTG  G+NRHS                               SRKPS
Sbjct: 1   MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 61  GSQVPLKKRLDPTDKDDD 8
           GSQVPLKKRLDPT++DDD
Sbjct: 61  GSQVPLKKRLDPTERDDD 78


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           sativus]
          Length = 660

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 39/78 (50%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = -1

Query: 235 MTELENLLLEAAGRTGGPGKNRHSXXXXXXXXXPXXXXXXXXXXXXXXXXXY--TSRKPS 62
           M +LENLLLEAAGRT   G+NRHS                               SRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPTDKDDD 8
           GSQVPLKKRLDPT++DDD
Sbjct: 61  GSQVPLKKRLDPTERDDD 78


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
 Frame = -1

Query: 235 MTELENLLLEAAGRTGGPGKNRHSXXXXXXXXXPXXXXXXXXXXXXXXXXXY--TSRKPS 62
           M +LENLLLEAAGRTG  G+NR++                              +SRKPS
Sbjct: 1   MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60

Query: 61  GSQVPLKKRLDPTDKDDDR 5
           GSQVPLKKRLDPT++DDD+
Sbjct: 61  GSQVPLKKRLDPTERDDDQ 79