BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010496
         (1288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24452.3| unnamed protein product [Vitis vinifera]              486   e-135
ref|XP_003629226.1| Pentatricopeptide repeat-containing protein ...   459   e-127
ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containi...   437   e-120
gb|ACU21153.1| unknown [Glycine max]                                  432   e-119
ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containi...   390   e-106

>emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  486 bits (1252), Expect = e-135
 Identities = 231/413 (55%), Positives = 307/413 (74%), Gaps = 2/413 (0%)
 Frame = -2

Query: 1236 VGSYRNSYDYTRILHNLRDKKELKEIHAQIITSGYEQSQFLAAKLISRYVEHSDSSMGDV 1057
            + S RNSYDYT +L   +  K +K IHAQII  G+E++ FL AKL+ +Y +  +S++ D 
Sbjct: 1    MASQRNSYDYTYLLQRCKGTKTIKSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDA 60

Query: 1056 RRVFDCVMERDVLLWNVIIRGYANTGPFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVS 877
            R+VFDC+ +RDV +WN II+GYAN GPF EA+++++ MR SG  AN+YT+PFV+KAC   
Sbjct: 61   RKVFDCLPDRDVFVWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAM 120

Query: 876  GARIKGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMI 697
                KG+ IHGH+VK GL+ DLFVGN+LVAFYAKC EI  SR+VFD    KDIV+WNSMI
Sbjct: 121  KDGKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMI 180

Query: 696  AGYAQNDFPHEAIKLFHQLLQKSTHCV--PDNTTFIGVLPACVQEAAVKEGMWIHCYVIK 523
            +GYA N    +A+ LFH +LQ     V  PD+ T + +LPAC Q AA++EG+WIH YVIK
Sbjct: 181  SGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIK 240

Query: 522  SGMKVSAPLASGLIAMYGNCGHLDTARNLFFRLPERNIFVWNAMVKCYGMNGNVNDALVM 343
            SG+++ A L SGLIAMY NCG L++AR++F R+ ++NI VWNA+++CYGM+G+ ++AL M
Sbjct: 241  SGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKM 300

Query: 342  FSEMVDSGIHPDGISFISVLSACSHAGLVDKGWELFRSMGDYGVEQWEEHYACMVDLLGR 163
            FS ++DSG+HPDG+ F+ +LSA SHAG+V +G ELF  MGDYGVE+  EHYA +VD+LGR
Sbjct: 301  FSGLIDSGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKMGDYGVEKSSEHYASVVDILGR 360

Query: 162  AGQLDEAWEFTQKMPMPPDASVWGALLGACRMHSNIRLGEIALSHLVRLEPQN 4
            AG L EA EF + MP+ P   V+GALLGACR+H+NI L E     L  L+P N
Sbjct: 361  AGFLHEAVEFVKNMPVQPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPDN 413


>ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355523248|gb|AET03702.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 510

 Score =  459 bits (1180), Expect = e-127
 Identities = 212/407 (52%), Positives = 295/407 (72%)
 Frame = -2

Query: 1224 RNSYDYTRILHNLRDKKELKEIHAQIITSGYEQSQFLAAKLISRYVEHSDSSMGDVRRVF 1045
            + S+ YT  LH+ +    +K+ HAQII  G++Q  F+AAKLI +Y +   +++   R+VF
Sbjct: 18   KTSFHYTDQLHHCKTIDRIKQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVF 77

Query: 1044 DCVMERDVLLWNVIIRGYANTGPFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVSGARI 865
            D + ERDV  WN +I+GYAN GPF+EA+ +++ MRLSG   N+YTYPFV+KAC      +
Sbjct: 78   DDLSERDVFCWNNVIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCL 137

Query: 864  KGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIAGYA 685
            KGR+IHG++VK GLEFDLFVGN+ VAFYAKC+EIE SRKVFDE + +DIVSWNSM++GY 
Sbjct: 138  KGRIIHGNVVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYI 197

Query: 684  QNDFPHEAIKLFHQLLQKSTHCVPDNTTFIGVLPACVQEAAVKEGMWIHCYVIKSGMKVS 505
             N +  EA+ LF  +L+      PDN T + VLPA  ++A +  G WIHCY++K+GMK+ 
Sbjct: 198  ANGYVDEAVMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLD 257

Query: 504  APLASGLIAMYGNCGHLDTARNLFFRLPERNIFVWNAMVKCYGMNGNVNDALVMFSEMVD 325
              +  GLI +Y NCG++  A+ +F ++P+RN+ VW+A+++CYGM+G   +AL MF ++V+
Sbjct: 258  PAVGCGLITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEALSMFRQLVE 317

Query: 324  SGIHPDGISFISVLSACSHAGLVDKGWELFRSMGDYGVEQWEEHYACMVDLLGRAGQLDE 145
             G+H DGI F+S+LSACSHAG+ ++GW LF++M  YGV + E HYACMVDLLGRAG L++
Sbjct: 318  LGLHLDGIVFLSLLSACSHAGMHEEGWHLFQTMETYGVVKGEAHYACMVDLLGRAGNLEK 377

Query: 144  AWEFTQKMPMPPDASVWGALLGACRMHSNIRLGEIALSHLVRLEPQN 4
            A E  Q MP+ P  +V+GALLGA R+H NI L E+A   L  L+P N
Sbjct: 378  AMELIQSMPIQPGKNVYGALLGASRIHKNIELAELAAEKLFVLDPNN 424


>ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
            mitochondrial-like [Glycine max]
          Length = 503

 Score =  437 bits (1124), Expect = e-120
 Identities = 202/413 (48%), Positives = 292/413 (70%)
 Frame = -2

Query: 1242 IRVGSYRNSYDYTRILHNLRDKKELKEIHAQIITSGYEQSQFLAAKLISRYVEHSDSSMG 1063
            +R   +++S+ YT +L+  +    +K+ HAQ++  G+EQ  F+AA+LI +Y   S+  + 
Sbjct: 12   LRPKLHKDSFYYTELLNLCKTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSN--LD 69

Query: 1062 DVRRVFDCVMERDVLLWNVIIRGYANTGPFSEAVSMFDQMRLSGFCANKYTYPFVIKACA 883
              R+VFD + E DV   NV+I+ YAN  PF EA+ ++D MR  G   N YTYPFV+KAC 
Sbjct: 70   HARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVYDAMRWRGITPNYYTYPFVLKACG 129

Query: 882  VSGARIKGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNS 703
              GA  KGR+IHGH VK G++ DLFVGN+LVAFYAKC+++E SRKVFDE   +DIVSWNS
Sbjct: 130  AEGASKKGRVIHGHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNS 189

Query: 702  MIAGYAQNDFPHEAIKLFHQLLQKSTHCVPDNTTFIGVLPACVQEAAVKEGMWIHCYVIK 523
            MI+GY  N +  +AI LF+ +L+  +   PD+ TF+ VLPA  Q A +  G WIHCY++K
Sbjct: 190  MISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVK 249

Query: 522  SGMKVSAPLASGLIAMYGNCGHLDTARNLFFRLPERNIFVWNAMVKCYGMNGNVNDALVM 343
            + M + + + +GLI++Y NCG++  AR +F R+ +R++ VW+A+++CYG +G   +AL +
Sbjct: 250  TRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALAL 309

Query: 342  FSEMVDSGIHPDGISFISVLSACSHAGLVDKGWELFRSMGDYGVEQWEEHYACMVDLLGR 163
            F ++V +G+ PDG+ F+ +LSACSHAGL+++GW LF +M  YGV + E HYAC+VDLLGR
Sbjct: 310  FRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDLLGR 369

Query: 162  AGQLDEAWEFTQKMPMPPDASVWGALLGACRMHSNIRLGEIALSHLVRLEPQN 4
            AG L++A EF Q MP+ P  +++GALLGACR+H N+ L E+A   L  L+P N
Sbjct: 370  AGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPDN 422


>gb|ACU21153.1| unknown [Glycine max]
          Length = 529

 Score =  432 bits (1111), Expect = e-119
 Identities = 200/413 (48%), Positives = 290/413 (70%)
 Frame = -2

Query: 1242 IRVGSYRNSYDYTRILHNLRDKKELKEIHAQIITSGYEQSQFLAAKLISRYVEHSDSSMG 1063
            +R   +++S+ YT +L+  +    +K+ HAQ++  G+EQ  F+AA+LI +Y   S+  + 
Sbjct: 12   LRPKLHKDSFYYTELLNLCKTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSN--LD 69

Query: 1062 DVRRVFDCVMERDVLLWNVIIRGYANTGPFSEAVSMFDQMRLSGFCANKYTYPFVIKACA 883
              R+VFD + E DV   NV+I+ YAN  PF EA+ + D MR  G   N YTYPFV+KAC 
Sbjct: 70   HARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVHDAMRWRGITPNYYTYPFVLKACG 129

Query: 882  VSGARIKGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNS 703
              GA  KGR+IH H VK G++ DLFVGN+LVAFYAKC+++E SRKVFDE   +DIVSWNS
Sbjct: 130  AEGASKKGRVIHEHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNS 189

Query: 702  MIAGYAQNDFPHEAIKLFHQLLQKSTHCVPDNTTFIGVLPACVQEAAVKEGMWIHCYVIK 523
            M++GY  N +  +AI LF+ +L+  +   PD+ TF+ VLPA  Q A +  G WIHCY++K
Sbjct: 190  MVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVK 249

Query: 522  SGMKVSAPLASGLIAMYGNCGHLDTARNLFFRLPERNIFVWNAMVKCYGMNGNVNDALVM 343
            + M + + + +GLI++Y NCG++  AR +F R+ +R++ VW+A+++CYG +G   +AL +
Sbjct: 250  TRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALAL 309

Query: 342  FSEMVDSGIHPDGISFISVLSACSHAGLVDKGWELFRSMGDYGVEQWEEHYACMVDLLGR 163
            F ++V +G+ PDG+ F+ +LSACSHAGL+++GW LF +M  YGV + E HYAC+VDLLGR
Sbjct: 310  FRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDLLGR 369

Query: 162  AGQLDEAWEFTQKMPMPPDASVWGALLGACRMHSNIRLGEIALSHLVRLEPQN 4
            AG L++A EF Q MP+ P  +++GALLGACR+H N+ L E+A   L  L+P N
Sbjct: 370  AGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPDN 422


>ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic-like [Cucumis sativus]
          Length = 480

 Score =  390 bits (1001), Expect = e-106
 Identities = 184/409 (44%), Positives = 268/409 (65%), Gaps = 2/409 (0%)
 Frame = -2

Query: 1227 YRNSYDYTRILHNLRDKKELKEIHAQIITSGYEQSQFLAAKLISRYVEHSDSS--MGDVR 1054
            +R+SY + ++L + R  + ++E+HAQI+  G +Q+ F+AAKLI +YVEH +    MG  R
Sbjct: 29   HRDSYGFIKLLGHCRSIRSVQELHAQILVEGLDQNGFVAAKLIGKYVEHDEGEVKMGTAR 88

Query: 1053 RVFDCVMERDVLLWNVIIRGYANTGPFSEAVSMFDQMRLSGFCANKYTYPFVIKACAVSG 874
            +VFD ++ RDV +WN                                       AC    
Sbjct: 89   KVFDTLVRRDVFVWN---------------------------------------ACGAMK 109

Query: 873  ARIKGRLIHGHLVKVGLEFDLFVGNSLVAFYAKCREIETSRKVFDETVVKDIVSWNSMIA 694
               KG ++HGH+VK GL+ DLFVGN+L+AFY+KC+++ET+RKVFD+  ++DIVSWNSMI 
Sbjct: 110  NSDKGEIVHGHVVKCGLDLDLFVGNALIAFYSKCQDVETARKVFDDMSLRDIVSWNSMIV 169

Query: 693  GYAQNDFPHEAIKLFHQLLQKSTHCVPDNTTFIGVLPACVQEAAVKEGMWIHCYVIKSGM 514
            GY  N    EAI  FH +L     C PD+ T + +LPAC  ++A + G W+H YVIK+G+
Sbjct: 170  GYTLNGKEDEAIMFFHAMLHNQADCTPDSATLVAILPACATKSASQVGFWVHSYVIKTGI 229

Query: 513  KVSAPLASGLIAMYGNCGHLDTARNLFFRLPERNIFVWNAMVKCYGMNGNVNDALVMFSE 334
            +V APL S LI MYGNCGH++ AR++F R+ ++N+ VW+A+++CYGM+G  ++A  MF  
Sbjct: 230  EVGAPLGSCLICMYGNCGHVNIARDVFDRIDDKNVIVWSAIIRCYGMHGFADEAFNMFRR 289

Query: 333  MVDSGIHPDGISFISVLSACSHAGLVDKGWELFRSMGDYGVEQWEEHYACMVDLLGRAGQ 154
            + ++G+ PDG+ F+++LSACSHAGLV KG E++  M  YG+E+ + HYACMVDLLGRAG 
Sbjct: 290  LEEAGVKPDGLIFLNLLSACSHAGLVAKGHEIYEKMEAYGLERKDNHYACMVDLLGRAGF 349

Query: 153  LDEAWEFTQKMPMPPDASVWGALLGACRMHSNIRLGEIALSHLVRLEPQ 7
            L++A EF + MP+     V+GALLGACR+H+N+ L +     L  L+P+
Sbjct: 350  LEQAVEFIEGMPVQAGKDVYGALLGACRIHNNLELAKEVGEKLFILDPE 398