BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010415
         (885 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI25589.3| unnamed protein product [Vitis vinifera]              298   1e-78
ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   298   1e-78
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A...   290   3e-76
ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arab...   290   3e-76
ref|XP_003542669.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   289   5e-76

>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score =  298 bits (763), Expect = 1e-78
 Identities = 146/167 (87%), Positives = 157/167 (94%)
 Frame = +2

Query: 368 MTVNKVTKQWVYQARYRVPVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 547
           MTV +VTK WVYQARYR+P++KAP GSWVL EGVDASIMKTATLCN++YDEDVY+F+PLL
Sbjct: 480 MTVKEVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLDYDEDVYIFRPLL 539

Query: 548 FNILPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDCIM 727
           FN LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLD IM
Sbjct: 540 FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIM 599

Query: 728 KDLRELYSEVEVNVAVLVISFCEMVVESSSMKCFAQTPNKKNKITMV 868
           KDLRELYSEVEV VA  V+SFCE VVESSSMKCFA+TPNKKNKITM+
Sbjct: 600 KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMI 646


>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
            [Vitis vinifera] gi|147858113|emb|CAN81413.1|
            hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score =  298 bits (763), Expect = 1e-78
 Identities = 146/167 (87%), Positives = 157/167 (94%)
 Frame = +2

Query: 368  MTVNKVTKQWVYQARYRVPVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 547
            MTV +VTK WVYQARYR+P++KAP GSWVL EGVDASIMKTATLCN++YDEDVY+F+PLL
Sbjct: 537  MTVKEVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLDYDEDVYIFRPLL 596

Query: 548  FNILPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDCIM 727
            FN LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLD IM
Sbjct: 597  FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIM 656

Query: 728  KDLRELYSEVEVNVAVLVISFCEMVVESSSMKCFAQTPNKKNKITMV 868
            KDLRELYSEVEV VA  V+SFCE VVESSSMKCFA+TPNKKNKITM+
Sbjct: 657  KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMI 703


>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
            gi|30679607|ref|NP_849600.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
            gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
            to an U5 snRNP-specific protein 116 kD from Homo sapiens
            gi|4759280 and contains elongation factor G C-terminus
            PF|00679 and is a member of the elongation factor Tu
            family PF|00009 [Arabidopsis thaliana]
            gi|110741512|dbj|BAE98706.1| elongation factor like
            protein [Arabidopsis thaliana]
            gi|332189840|gb|AEE27961.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
            gi|332189841|gb|AEE27962.1| U5 small nuclear
            ribonucleoprotein component [Arabidopsis thaliana]
          Length = 987

 Score =  290 bits (742), Expect = 3e-76
 Identities = 142/167 (85%), Positives = 153/167 (91%)
 Frame = +2

Query: 368  MTVNKVTKQWVYQARYRVPVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 547
            MT+ +VTK W+YQARYR+PV+ AP GSWVL EGVDASIMKTATLCN +YDEDVY+F+ L 
Sbjct: 536  MTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQ 595

Query: 548  FNILPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDCIM 727
            FN LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLD IM
Sbjct: 596  FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIM 655

Query: 728  KDLRELYSEVEVNVAVLVISFCEMVVESSSMKCFAQTPNKKNKITMV 868
            KDLRELYSEVEV VA  V+SFCE VVESSSMKCFA+TPNKKNKITM+
Sbjct: 656  KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMI 702


>ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arabidopsis lyrata subsp.
            lyrata] gi|297335434|gb|EFH65851.1| hypothetical protein
            ARALYDRAFT_470642 [Arabidopsis lyrata subsp. lyrata]
          Length = 987

 Score =  290 bits (742), Expect = 3e-76
 Identities = 142/167 (85%), Positives = 153/167 (91%)
 Frame = +2

Query: 368  MTVNKVTKQWVYQARYRVPVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 547
            MT+ +VTK W+YQARYR+PV+ AP GSWVL EGVDASIMKTATLCN +YDEDVY+F+ L 
Sbjct: 536  MTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQ 595

Query: 548  FNILPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDCIM 727
            FN LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLD IM
Sbjct: 596  FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIM 655

Query: 728  KDLRELYSEVEVNVAVLVISFCEMVVESSSMKCFAQTPNKKNKITMV 868
            KDLRELYSEVEV VA  V+SFCE VVESSSMKCFA+TPNKKNKITM+
Sbjct: 656  KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMI 702


>ref|XP_003542669.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like
            [Glycine max]
          Length = 986

 Score =  289 bits (740), Expect = 5e-76
 Identities = 145/167 (86%), Positives = 154/167 (92%)
 Frame = +2

Query: 368  MTVNKVTKQWVYQARYRVPVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 547
            MTV +VTK WVYQAR R+PVA+AP GSWVL EGVDASIMKTATLCNV+YDEDVY+F+PL 
Sbjct: 535  MTVKEVTKLWVYQARDRMPVAEAPPGSWVLIEGVDASIMKTATLCNVDYDEDVYIFRPLQ 594

Query: 548  FNILPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDCIM 727
            FN L VVKTATEPLNPSELPKMVEGLRKISKSYPLA+TKVEESGEHTILGTGELYLD IM
Sbjct: 595  FNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAVTKVEESGEHTILGTGELYLDSIM 654

Query: 728  KDLRELYSEVEVNVAVLVISFCEMVVESSSMKCFAQTPNKKNKITMV 868
            KDLRELYSEVEV VA  V+SFCE VVESSSMKCFA+TPNKKNKITMV
Sbjct: 655  KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMV 701